mRNA_E-siliculosus-1a_M_contig94.17439.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Match: D8LN07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN07_ECTSI) HSP 1 Score: 790 bits (2040), Expect = 1.160e-286 Identity = 423/463 (91.36%), Postives = 429/463 (92.66%), Query Frame = 1 Query: 4 EDKQLSVRFSGSVDSGPRISSSDDDGESEWEAFDAAFRGQTASMKEPAATATPARVTLARRPFKENQRAANNGRARTHRSDSAASSSAEDLRVLPPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHQVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARL-------DSALATPNSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELPGGGYGLRTTGPGGYAEGFRPANYDDGXXXXXXXXXSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAHGKRAVVSAYRRLANSATATYHRRLPTLSSTVVTRLGNTPSG 1371
EDKQLSVRFSGSVDSGPR SSSDDDGESEWEAFDAAFRG+TASM +PAATATP RVTLARRPFKENQRAA+ GRARTHR+DSAASSSAEDLRVL PTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHH VAGSATSHLHENDFNNKYRTHHHQTGAVLQPAR D+ ATPNSSSPS LNDTSRAF WSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREG LLLAASLTLAVPFATSFTVYGEVVVDRALDE+EASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSEL GGGYGLRTTGPGGYAEGFRPANYDDG SNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAA GKRAVVSAYRRLA SATATYHRRLPTLSST VTRLGN SG
Sbjct: 2 EDKQLSVRFSGSVDSGPRSSSSDDDGESEWEAFDAAFRGKTASMTDPAATATPGRVTLARRPFKENQRAAS-GRARTHRTDSAASSSAEDLRVLAPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHHVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARRLPLYHHNDATQATPNSSSPSALNDTSRAFVWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVVDRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELTGGGYGLRTTGPGGYAEGFRPANYDDGDGGGR----SNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAQGKRAVVSAYRRLAYSATATYHRRLPTLSSTAVTRLGNMSSG 459
BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Match: A0A6H5KPM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM1_9PHAE) HSP 1 Score: 708 bits (1828), Expect = 1.710e-254 Identity = 387/455 (85.05%), Postives = 407/455 (89.45%), Query Frame = 1 Query: 4 EDKQLSVRFSGSVDSGPRISSS-DDDGESEWEAFDAAFRGQTASMKEPAATATPARVTLARRPFKENQRAANNGRARTHRSDSAASSSAEDLRVLPPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHQVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARL-------DSALATPNSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELPGGGYGLRTTGPGGYAEGFRPANYDDGXXXXXXXXXSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAHGKRAVVSAYRRLANSATATYHRRLPTLSSTVV 1344
EDKQLSVRFSGSVDSGPRISSS DDDGESEWEAFDAAFRG+TASM EPA+T TPARVTLARRPFKENQRAA+ GRARTHR++SAASSSAED+R+L PTRAG HG +SS A QLAPGYDG++DH+GTSQRP+RHHQV GS TSHLHENDFNNK+RT+H QTGAVLQ AR D A AT +SSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVA+AWVALVASVGASGHAHHHRAGLRKHAAALAREG LLLAASLTLAVPFATSFTVYGEVV RALDE+EASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSEL GGG+ LRT+ PG AEGFRP NYDDG SNKPPSI YVGAIAAQSMDADRMGVG+LHPPEEL LRLRQAAAHGKRAVVSAYRRLANSA ATYHRRLPT SS V
Sbjct: 2 EDKQLSVRFSGSVDSGPRISSSSDDDGESEWEAFDAAFRGKTASMTEPASTPTPARVTLARRPFKENQRAAS-GRARTHRTNSAASSSAEDMRLLAPTRAGFHGRSSSSAEQLAPGYDGESDHIGTSQRPHRHHQVVGSTTSHLHENDFNNKHRTNH-QTGAVLQSARRLPLYNHNDYAQATSSSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVASAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVAGRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELTGGGHSLRTSSPGVCAEGFRPTNYDDGGSGGGGR--SNKPPSIRYVGAIAAQSMDADRMGVGMLHPPEELKLRLRQAAAHGKRAVVSAYRRLANSAAATYHRRLPTFSSNAV 452
BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Match: A0A7S2RB02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB02_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 5.630e-5 Identity = 42/124 (33.87%), Postives = 59/124 (47.58%), Query Frame = 1 Query: 607 EAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLR-------KHAAALAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTVLGAVDPLRFCVFAFGQAGE 957
EAPLAV E + R +YL AA+++ +V+ + A +H+ ALARE +P SF VY R + W + P+PTVLG+VDP RF F+ GQ G+
Sbjct: 185 EAPLAVAEAVCRAIVYLFAASFILVVSGMYYLAEAXXXXXEDEPLWLLSFRHSQALAREALXXXXXXXXXXIP-CCSFFVY------RDFRPEADDWQLSPLPTVLGSVDPRRFVAFSLGQGGD 301 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17439.1 >prot_E-siliculosus-1a_M_contig94.17439.1 ID=prot_E-siliculosus-1a_M_contig94.17439.1|Name=mRNA_E-siliculosus-1a_M_contig94.17439.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=458bp QEDKQLSVRFSGSVDSGPRISSSDDDGESEWEAFDAAFRGQTASMKEPAAback to top mRNA from alignment at E-siliculosus-1a_M_contig94:469820..471193- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17439.1 ID=mRNA_E-siliculosus-1a_M_contig94.17439.1|Name=mRNA_E-siliculosus-1a_M_contig94.17439.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:469820..471193- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:469820..471193- >mRNA_E-siliculosus-1a_M_contig94.17439.1 ID=mRNA_E-siliculosus-1a_M_contig94.17439.1|Name=mRNA_E-siliculosus-1a_M_contig94.17439.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2748bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:469820..471193- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |