mRNA_E-siliculosus-1a_M_contig94.17438.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE) HSP 1 Score: 379 bits (974), Expect = 1.080e-110 Identity = 340/381 (89.24%), Postives = 349/381 (91.60%), Query Frame = 2 Query: 125 YDDPCLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKKVLDASGDDDVPASASTTGAARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------QEMRLAALAVLXXXXXXXXXPANNANGMVDANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTEEEKEXXXXXDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KPRRAWSANMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQKRRN 1234
YDDPCLVCGGLDNPDKALLCDGCDGCYH+YCL+PPLKRAPKGDWLCPKC +KVLDASGDDDVPASASTTG ARK XXXXXXXXXXXXXXXXXXXXXXXX QEMRLAAL XXXXXXXXX ANNANG+V ANXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TEEE+E DICLVCCEVRDPDRILRCS+CSGGGSGMGIYHNECLPKPL+SMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KPRRAWSA+MEALLATAVKK+GAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQKRRN
Sbjct: 1151 YDDPCLVCGGLDNPDKALLCDGCDGCYHVYCLSPPLKRAPKGDWLCPKCVEKVLDASGDDDVPASASTTGPARKGKGSSASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQEMRLAALXXXXXXXXXXXXLANNANGVVGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEEEEE----DICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPRRAWSASMEALLATAVKKVGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQKRRN 1527
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: D8LN06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN06_ECTSI) HSP 1 Score: 248 bits (634), Expect = 3.810e-73 Identity = 215/262 (82.06%), Postives = 221/262 (84.35%), Query Frame = 2 Query: 449 MRLAALAVLXXXXXXXXXPANNANGMVDANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTEEEKEXXXXXDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPRRAWSANMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQKRRN 1234
MRLAALAVL PANNANG+VDAN XXXXXXXXXXXXXX TEEE+E DICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PRRAWS++MEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANAL+QKWRTLSQKRR+
Sbjct: 1 MRLAALAVLEESSEDNEEPANNANGVVDANESGEETESDGPEATAXXXXXXXXXXXXXXXTEEEEEE----DICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGGPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PRRAWSSSMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALRQKWRTLSQKRRS 252
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A7S1JGF3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JGF3_9EUGL) HSP 1 Score: 84.3 bits (207), Expect = 2.230e-15 Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 128 DDPCLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKK 280
++PC++CGG + ++++LCDGCDG YH++CL PPLK P GDW CP+C K
Sbjct: 30 NEPCVICGGKEEAERSVLCDGCDGAYHIFCLRPPLKTIPDGDWFCPQCQAK 80
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A7S1CM23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM23_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.320e-12 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 2 Query: 128 DDPCLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKKVLDA 292
D C VCGGL P K LLCD CDG YH++CL PPLK P GDW CP C + +LD+
Sbjct: 416 DPGCRVCGGLHKPSKVLLCDHCDGEYHLFCLKPPLKAVPAGDWACPDCTE-LLDS 469
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A673HEG1_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HEG1_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 8.030e-12 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 137 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 271
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 244 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 288
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A673HDD9_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=6 Tax=Cyprininae TaxID=2743694 RepID=A0A673HDD9_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 8.040e-12 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 137 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 271
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 239 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 283
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A673HE83_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE83_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 8.080e-12 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 137 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 271
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 340
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A673HE89_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE89_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 8.090e-12 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 137 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 271
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 340
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A673HE77_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE77_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 8.110e-12 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 137 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 271
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 282 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 326
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Match: A0A835SC30_9CHLO (PHD-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SC30_9CHLO) HSP 1 Score: 80.1 bits (196), Expect = 1.620e-11 Identity = 37/58 (63.79%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 125 YDDP-CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKKVLDAS 295
YDD C VCGG D+PD LLCD CDG YHM CL PPLK P GDW CP C DAS
Sbjct: 1618 YDDTLCAVCGGGDDPDTILLCDTCDGGYHMGCLDPPLKDIPDGDWHCPNCT--AADAS 1673 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17438.1 >prot_E-siliculosus-1a_M_contig94.17438.1 ID=prot_E-siliculosus-1a_M_contig94.17438.1|Name=mRNA_E-siliculosus-1a_M_contig94.17438.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=343bp MYCLTPPLKRAPKGDWLCPKCAKKVLDASGDDDVPASASTTGAARKGKGSback to top mRNA from alignment at E-siliculosus-1a_M_contig94:464907..469749+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17438.1 ID=mRNA_E-siliculosus-1a_M_contig94.17438.1|Name=mRNA_E-siliculosus-1a_M_contig94.17438.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4843bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:464907..469749+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:464907..469749+ >mRNA_E-siliculosus-1a_M_contig94.17438.1 ID=mRNA_E-siliculosus-1a_M_contig94.17438.1|Name=mRNA_E-siliculosus-1a_M_contig94.17438.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2058bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:464907..469749+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |