mRNA_E-siliculosus-1a_M_contig94.17423.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17423.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE) HSP 1 Score: 1295 bits (3351), Expect = 0.000e+0 Identity = 663/684 (96.93%), Postives = 677/684 (98.98%), Query Frame = 3 Query: 267 MSQHKHFTVEQIVYEGHIDLGENLWEKLGRPVGMPHLEERDLKLLDEAISILNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEEGDVATEDMTPEAAAAALRVSEREKQEEAMKKPPKLPEIILFWGRNMRRGGNLVVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFSERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDISRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGAVAVTIYVGLSYEIEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTTLMLINKVSLTWRRMANEVVSHARDSAQGEFSVRDILKFLLQVLPLTPLFLVSLPIPVLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPNRPYWHLSKTSANRLGCIAVKIGTGEEQSSKTLLVSPDYIPDKPLAHADAPASVC 2318 MSQHKHFTVEQIVYEGHIDLGENLWEKLGRPVGMPHLEERDLKLLDEAIS+LNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEE DVA ED+TPEAAAAALRVSER+K+EEAMKKPPKLPEIILFWGRNMRRGGNL+VCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSF ERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMD+SRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSG V VTI+VG+S+E EGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDT LMLINKVSLTWRRMANEVVSHARDSA+GEFSVRDILKFLLQVLPLTPLFLVSLPIP+LYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIP+RPYWHLSKTSANRLGCIAVKIGTGEE++SKTLLVSPDYIPDKPLAHADAPASVC Sbjct: 1 MSQHKHFTVEQIVYEGHIDLGENLWEKLGRPVGMPHLEERDLKLLDEAISLLNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEESDVAPEDLTPEAAAAALRVSERDKEEEAMKKPPKLPEIILFWGRNMRRGGNLIVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSVRDILKFLLQVLPLTPLFLVSLPIPLLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPSRPYWHLSKTSANRLGCIAVKIGTGEEENSKTLLVSPDYIPDKPLAHADAPASVC 684 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17423.1 >prot_E-siliculosus-1a_M_contig94.17423.1 ID=prot_E-siliculosus-1a_M_contig94.17423.1|Name=mRNA_E-siliculosus-1a_M_contig94.17423.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=685bp MSQHKHFTVEQIVYEGHIDLGENLWEKLGRPVGMPHLEERDLKLLDEAISback to top mRNA from alignment at E-siliculosus-1a_M_contig94:282233..294011+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17423.1 ID=mRNA_E-siliculosus-1a_M_contig94.17423.1|Name=mRNA_E-siliculosus-1a_M_contig94.17423.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=11779bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:282233..294011+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:282233..294011+ >mRNA_E-siliculosus-1a_M_contig94.17423.1 ID=mRNA_E-siliculosus-1a_M_contig94.17423.1|Name=mRNA_E-siliculosus-1a_M_contig94.17423.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4110bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:282233..294011+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |