mRNA_E-siliculosus-1a_M_contig94.17421.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.750e-55 Identity = 185/369 (50.14%), Postives = 195/369 (52.85%), Query Frame = 3 Query: 9 MPPRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLTASEWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAFGTAMQRS*QTCWSIGH-VSASRMRAAVPLSKLLPCLGTRRLSSRCYGRGPNKTF*MRRSVRRCTVRCYLATLLLHELSWRLAQTSTCDAVYYRGRC*AWRMKRVRWTS*ERLSSMERTRRLLTMTATRPFHVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---------------------------------HASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAAR 1013 MPPRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLT WAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAA G VS R + PL A + RC LL T +AA+ +++ ALV G ++ A + T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX H SSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLL K LWPCLYPGDA R Sbjct: 1 MPPRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACVSIKDTRGSTPLQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVNV--------RC-----------------------GLLKRTV---LSLAAEKGHVDILRALVKHGADVTAVDNDRDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLNKLLWPCLYPGDAER 335
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE) HSP 1 Score: 186 bits (471), Expect = 9.020e-52 Identity = 94/111 (84.68%), Postives = 98/111 (88.29%), Query Frame = 3 Query: 846 QHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRLDSSSTLVDAARTTHNEAKVPR 1178 Q +++ AR TSAVVDLLLRLGA ETIVDKRK NAAGLLKK W CLYPGDA RVYKLL NAPADRAWRRRGFLLLCRAYP+RVPPRLDSSSTLVDAARTTHNEAKVPR Sbjct: 157 QAVVALSKRARRTSAVVDLLLRLGAHETIVDKRKKNAAGLLKKSWWSCLYPGDAERVYKLLRNAPADRAWRRRGFLLLCRAYPERVPPRLDSSSTLVDAARTTHNEAKVPR 267
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.600e-23 Identity = 66/146 (45.21%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 876 RGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWP-CLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRLDSSST-LVDAARTTHNEAKVPRLETICCGDDTTVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307 +G + VV+ LLR GADETI + + A ++ + + D RV +LL NAPADRAWRRRG+L++CRA P RVP R +S T + AR T + AK+ R I ++TV+ES G +WA V KV++L E +FR IV YL Sbjct: 257 QGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIA--GESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.270e-18 Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 3 Query: 852 ASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKK--PLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRL-DSSSTLVDAARTTHNEAKVPRLETICCGDDT-TVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307 A+S AG +G++ +VDLLLR GADET D+ A + L L + V++LL NAPADRAWRRRG L+LCRA+ +R R D T +R T + AK+ R + + G T E GD W + +V+ L E +FR++VG+L Sbjct: 268 AASYAGR-QGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 2.550e-17 Identity = 92/152 (60.53%), Postives = 103/152 (67.76%), Query Frame = 3 Query: 648 HVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRV 1103 H AA+ NRA ID LV G +I+A N G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G+ RG+ VV LLLR GADETIV K+ AA + +P PGD R LL APADRAWRRRG L+LC AYP R+ Sbjct: 207 HWAAKANRANAIDVLVGAGADIQARNMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRL 358
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 1.460e-13 Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = 3 Query: 879 GTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPG------DAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRLDSSSTLVDAA-RTTHNEAKVPRLETIC--CGDDTTVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307 G VVDLLLR ADET D A G + C+ P + RV+KLL AP DRAWRRRG L+LCRA+P+R+ R ++S R T + K+ E + G+ + W+++ ++VL L E +FR IVGYL Sbjct: 254 GAVEVVDLLLRWNADETDDD-----AYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLD-EGIFRTIVGYL 399
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 2.540e-12 Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 858 SVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRV 1103 + G+ G++ VVDLLLR GADETIV K+ AA + P D R LL APADRAWRRRG L+LCRA+P R+ Sbjct: 281 AAVGQRHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRL 362
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 3.910e-12 Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 3 Query: 1002 DAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRL-DSSSTLVDAARTTHNEAKVPRLETICCGDDT-TVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307 + V++LL NAPADRAWRRRG L+LCRA+ +R R D T +R T + AK+ R + + G + T E GD W + +V+ L E +FR++VG+L Sbjct: 50 EVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRSGTPEGGTGDEWRSASRRVVELE-EGIFRSVVGFL 152
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 8.070e-12 Identity = 54/151 (35.76%), Postives = 70/151 (46.36%), Query Frame = 3 Query: 648 HVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYP---GDAARVYKLLCNAPADRAWRRRGFLLLCRAY 1091 HVAA NR ID LV+ G ++E + CT A+ AG +G +A+VD+LLR GADET ++ AA ++ + P D RV LL NAP DRAWRRRGFL+LCRA+ Sbjct: 144 HVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGR-QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 2.130e-11 Identity = 54/151 (35.76%), Postives = 70/151 (46.36%), Query Frame = 3 Query: 648 HVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYP---GDAARVYKLLCNAPADRAWRRRGFLLLCRAY 1091 HVAA NR ID LV+ G ++E + CT A+ AG +G +A+VD+LLR GADET ++ AA ++ + P D RV LL NAPADRAWRRRG L+LCRA+ Sbjct: 193 HVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGR-QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17421.1 >prot_E-siliculosus-1a_M_contig94.17421.1 ID=prot_E-siliculosus-1a_M_contig94.17421.1|Name=mRNA_E-siliculosus-1a_M_contig94.17421.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=237bp MERTRRLLTMTATRPFHVAAQFNRAEVIDALVDMGGNIEASNRIGCTPLHback to top mRNA from alignment at E-siliculosus-1a_M_contig94:258381..259854+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17421.1 ID=mRNA_E-siliculosus-1a_M_contig94.17421.1|Name=mRNA_E-siliculosus-1a_M_contig94.17421.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1474bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:258381..259854+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:258381..259854+ >mRNA_E-siliculosus-1a_M_contig94.17421.1 ID=mRNA_E-siliculosus-1a_M_contig94.17421.1|Name=mRNA_E-siliculosus-1a_M_contig94.17421.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1422bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:258381..259854+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |