mRNA_E-siliculosus-1a_M_contig94.17419.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17419.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI) HSP 1 Score: 1512 bits (3915), Expect = 0.000e+0 Identity = 895/971 (92.17%), Postives = 907/971 (93.41%), Query Frame = 1 Query: 43 MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDXXXXXXXXXXVLRGGRSSAGDGGDIFLGSLSPPALPQVTGTSAAGELVVDDGKAIADAFPADWLNDFEGLGLGVQGKTGSSAAPATAS-QPIHSSPQGQHPHQXXXXXXXXXXHQQHRDATIQNNETGEVLGEEPEILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGRAAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALAAAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGGEGDGQAGQXXXDSGEHAAAAGQEHGQRRVLPAPLRTVEVYLRPDVTWDSVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRDVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRAYGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGGGNSFPPQNKGVDVDDENAFXXXXXXXXXXXXXXXXXXXXXXXX--SVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLVAVEGHREALIAALRDGAGGSAASSTSAGREFAARFRPMAKEAVLCQCKAVHAKRVGKLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLVTLVDRGGEEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLXXXXXXXXXXXXXXXXXXPTSAAAVDMAPPAASPHSRPGYPRPEESEVAERDTGASVGGGVVEGGAGRAMGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS 2946
MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDD VLRGGRSS G GGDIFLGSLSPPAL QVTGTSAAGEL+ DDGKAIADAFPADWLNDFEG+GLGVQGKT SSAA ATA+ QPIHSSPQGQ XXXXXXXXXX QHRDATIQNNETGEVLGEEP+ILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNG AAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALA APVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGG GDGQAGQ X+SGEHAAAAGQE GQR VLPAPLRTVEVYLRPDVTW+SVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIR+VLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRA GLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGG +SFPPQ KGVDVDDEN F XXXXXXXXXX SVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRL+AVEGHREALIAALRDGAGGSAASST AGREFAARFRPMAKEAVLCQCKAVHAKRVG+LYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDL+TLVDRGG+EHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQL XXXXXXXXXXXXXXXXX DMAPPAASPHSRPGYPRPEESE AERDTGASVGGGVVEGGAG AM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS
Sbjct: 1 MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDTASGGSTTTSVLRGGRSSVGKGGDIFLGSLSPPALQQVTGTSAAGELLADDGKAIADAFPADWLNDFEGIGLGVQGKTDSSAASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQHRDATIQNNETGEVLGEEPQILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGSAAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALAVAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGGGGDGQAGQGAXESGEHAAAAGQERGQRHVLPAPLRTVEVYLRPDVTWESVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGG-DSFPPQ-KGVDVDDENVFASGGXXXXXXXXXXDEGRGAKVGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLLTLVDRGGQEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLRXXXXXXXXXXXXXXXXXXXXXXXXDMAPPAASPHSRPGYPRPEESEFAERDTGASVGGGVVEGGAGGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS 969
BLAST of mRNA_E-siliculosus-1a_M_contig94.17419.1 vs. uniprot
Match: A0A7S2F8A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8A2_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1 Query: 1951 LIRATWEDVKEWCDEEAEARVRRKDAQVRDRLVAVEGHREALIAALRDGAGGSAASSTSAGREFAARFRPMAKEAVLCQCKAVHAK-----RVGKLYLTCNHVCFHS--SVLGFTSQRVLPLLTVATISHA 2322
++RA W + C+EEA AR+ RK V RL A+EG+R A+++ L + + + R F RFR +A EA+L C AV + R G++Y+T H+ F +L +Q +P T+ I A
Sbjct: 69 VVRALWRLLGSKCEEEARARMARKQKVVTQRLQAIEGYRSAVVSKLANRSQQNRTELIGVERAFRGRFR-VADEALLVDCAAVVTEADGKQRKGRVYVTMGHLWFDDPGGLLTSPTQTPIPFYTIHEIGKA 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17419.1 >prot_E-siliculosus-1a_M_contig94.17419.1 ID=prot_E-siliculosus-1a_M_contig94.17419.1|Name=mRNA_E-siliculosus-1a_M_contig94.17419.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=983bp HGHLFSRGVQGFAVMASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDback to top mRNA from alignment at E-siliculosus-1a_M_contig94:244190..249918- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17419.1 ID=mRNA_E-siliculosus-1a_M_contig94.17419.1|Name=mRNA_E-siliculosus-1a_M_contig94.17419.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5729bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:244190..249918- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:244190..249918- >mRNA_E-siliculosus-1a_M_contig94.17419.1 ID=mRNA_E-siliculosus-1a_M_contig94.17419.1|Name=mRNA_E-siliculosus-1a_M_contig94.17419.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5898bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:244190..249918- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |