mRNA_E-siliculosus-1a_M_contig94.17418.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A6H5JAJ0_9PHAE (OHCU_decarbox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAJ0_9PHAE) HSP 1 Score: 288 bits (736), Expect = 2.370e-91 Identity = 142/161 (88.20%), Postives = 150/161 (93.17%), Query Frame = 2 Query: 26 MEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIF 508 MEALQALPRHELRQ LLRCCHSNAWADAVLGRMPFKSEEEA+ AMDDCWAKL+PADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNE+YRQKNGFVFLVCASG+PADAILALLKARLPNDRDTE+ + E ++ T F Sbjct: 1 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEAQAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEEYRQKNGFVFLVCASGMPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRF 161
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: UPI00199ADACE (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI00199ADACE) HSP 1 Score: 131 bits (329), Expect = 4.890e-32 Identity = 70/157 (44.59%), Postives = 95/157 (60.51%), Query Frame = 2 Query: 26 MEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRET 496 +EAL L R+ L RCC ++ W D +L PF ++ +A D WA +D+LEA +P IGD+ + R KFA S + W EQ+ A+ A+EAVL LS+ N Y K GF+F+VCA+G AD +LALL+ARLPNDR TE+ GE + T Sbjct: 4 VEALTGLTEPAWREMLTRCCGASHWVDGMLVLRPFSTDTALMKAADQVWAGTGESDWLEAFTHYPKIGDRDSRRQKFA-STAEWASHEQSGASAANEAVLTALSDGNLNYEAKFGFIFIVCATGKSADEMLALLQARLPNDRATELQIAAGEQHKIT 159
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A2A4VT63_9GAMM (OHCU decarboxylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A4VT63_9GAMM) HSP 1 Score: 126 bits (317), Expect = 2.530e-30 Identity = 69/159 (43.40%), Postives = 95/159 (59.75%), Query Frame = 2 Query: 35 LQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFE 511 L LP+ + + L++ C S W + +L R PF + +A D W LT ADYL+A HP IGD +LR K+A +++ EQ+A A EAVL +L+ NE+Y K GF+F+VCA+G A+ +LALLKARLPNDR TE L + E IF+ Sbjct: 11 LNNLPQEQAKAILMQMCTSETWCERILQRRPFADLQALVQAADLAWQNLTEADYLQAFDGHPKIGDVNSLRAKYANTKA-LASGEQSAVNNADEAVLHDLAIFNEQYHAKFGFIFIVCATGKSAEQMLALLKARLPNDRTTE----LNNAEVEQGKIFQ 164
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A7S2UY41_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY41_9STRA) HSP 1 Score: 126 bits (316), Expect = 6.150e-30 Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 71 LLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCW-----AKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRET 496 L RCCHSN WA VL PF+S+++ E MD W A P D+LEA AAHP IGD++A+ K A SG+E +EQ A GAS+ V L+E NEKY +K GF+FL+CA+G A +L L+ R ND D E+ GE Q+ T Sbjct: 30 LKRCCHSNTWARLVLSSRPFESKDDLLEKMDLFWGLGASAYCGPQDWLEAFAAHPKIGDQKAVEKKEA-HHSGFESEEQKGAEGASDDVKSSLAEWNEKYFEKFGFIFLICATGKSAAEMLQALQDRYSNDADKEIRVAAGEQQKIT 175
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A1D2AEV0_AUXPR (OHCU_decarbox domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AEV0_AUXPR) HSP 1 Score: 123 bits (308), Expect = 8.600e-29 Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 2 Query: 62 RQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTP-ADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETD 499 R+ LL CCHS AWADAVL + PF+S E+ E W TP +LEA AAHP +GD++ L + + S EQ++AAGA+EA L L++ N +Y + G +F+ CA+G PAD +LA++K R ND TE+S GE + T+ Sbjct: 7 RETLLTCCHSGAWADAVLAKQPFQSMEKLIEGARSAWWNETPITGWLEAFAAHPRLGDRRGLAQRSG-AFSDLSRDEQSSAAGAAEATLAALTDWNARYEARFGHIFIACAAGTPADRMLAMVKQRYTNDPATELSVAAGEQMKITE 152
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A4Q5PXQ2_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q5PXQ2_9BACT) HSP 1 Score: 120 bits (302), Expect = 2.820e-28 Identity = 59/163 (36.20%), Postives = 93/163 (57.06%), Query Frame = 2 Query: 23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFE 511 S+E L L++ L+CC SN+WA+ ++ + PF +E+ + D W +L AD+LEA A HP IGD +L KFA ++ W + EQ+ A + ++EL+E N+KY K ++F+VCA+G A +L +LK+R+ ND E+ E + T E Sbjct: 2 SIEKLNNTESQILKEEFLKCCGSNSWAEKLVEQRPFSDQEDLFKKSDSIWEQLDKADFLEAFAQHPKIGDINSLAKKFAHTKQ-WAENEQSGVDSAPDKTIEELAEYNKKYEDKYSYIFIVCATGKSAQEMLDILKSRINNDPQLELKTAANEQNKITKIRLE 163
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: UPI000B7CB895 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI000B7CB895) HSP 1 Score: 121 bits (303), Expect = 3.490e-28 Identity = 64/164 (39.02%), Postives = 91/164 (55.49%), Query Frame = 2 Query: 23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFET 514 S++ + + R L+ L RCC + W ++ + PF ++ DD W L PAD+ EA A HP IGD +LR KFA + S W ++EQA A+EAVL L++ N Y +K G++F+VCA+G A +L LL RLPND E+ E +R ET Sbjct: 4 SIDVVNNMERTALQTLLARCCGATRWVSGMIDQRPFTDWPHLQQVADDIWRTLAPADWREAFAQHPKIGDLDSLRAKFASTES-WSEREQAGVQDATEAVLQGLAQGNRDYERKFGYLFIVCATGKSATEMLELLWQRLPNDPPDELPIAAEEQRRIMQIRLET 166
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A562T3E8_CHIJA (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Chitinophaga japonensis TaxID=104662 RepID=A0A562T3E8_CHIJA) HSP 1 Score: 119 bits (298), Expect = 9.810e-28 Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 2 Query: 23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFE 511 ++ AL +LP EL++AL RCC + AW + R P K E A W T AD+ EA A HP IGD ALR+KFA + W EQ+A A EA L L+ N +Y +K G++F+VCA+G PA +L L+ RLP+ E+ + E ++ T E Sbjct: 2 TVAALNSLPLQELQEALRRCCGATAWVAGMCARFPVKDAETLFSAASAIWRNCTEADWKEAFAHHPQIGDLSALREKFAATAQ-WAAGEQSAVQQADEATLQALAAGNRQYLEKFGYIFIVCATGKPAADMLQQLQERLPHTPQQEIRIAMQEQEKITKLRLE 163
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A0D8CQQ8_9GAMM (OHCU decarboxylase n=1 Tax=Thalassomonas actiniarum TaxID=485447 RepID=A0A0D8CQQ8_9GAMM) HSP 1 Score: 119 bits (297), Expect = 1.390e-27 Identity = 63/157 (40.13%), Postives = 96/157 (61.15%), Query Frame = 2 Query: 23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRE 493 +++ L LP + A ++CC ++ W A++ PF E +A D W L+ +DYLEA HP IGD +LR K+A +++ EQ+A ASE VL++L++ N Y K GF+F+VCA+G A+ +LALL+ARLPN+R E++ E QR+ Sbjct: 2 TLQELNLLPESDASHAFMQCCTASTWVKAMVQSRPFADEAALYQAADQHWQGLSESDYLEAFEGHPKIGDVNSLRAKYANTKA-LASGEQSAVNVASEQVLNDLAKGNSDYETKFGFIFIVCATGKSAEQMLALLQARLPNERAQELA-NAAEEQRK 156
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A1D1ZY42_AUXPR (Hydroxyisourate hydrolase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZY42_AUXPR) HSP 1 Score: 123 bits (308), Expect = 1.480e-27 Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 2 Query: 62 RQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTP-ADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETD 499 R+ LL CCHS AWADAVL + PF+S E+ E W TP +LEA AAHP +GD++ L + + S EQ++AAGA+EA L L++ N +Y + G +F+ CA+G PAD +LA++K R ND TE+S GE + T+ Sbjct: 7 RETLLTCCHSGAWADAVLAKQPFQSMEKLIEGARSAWWNETPITGWLEAFAAHPRLGDRRGLAQRSG-AFSDLSRDEQSSAAGAAEATLAALADWNARYEARFGHIFIACAAGTPADRMLAMVKQRYTNDPATELSVAAGEQMKITE 152 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17418.1 >prot_E-siliculosus-1a_M_contig94.17418.1 ID=prot_E-siliculosus-1a_M_contig94.17418.1|Name=mRNA_E-siliculosus-1a_M_contig94.17418.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=197bp MEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAback to top mRNA from alignment at E-siliculosus-1a_M_contig94:238836..243205+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17418.1 ID=mRNA_E-siliculosus-1a_M_contig94.17418.1|Name=mRNA_E-siliculosus-1a_M_contig94.17418.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4370bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:238836..243205+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:238836..243205+ >mRNA_E-siliculosus-1a_M_contig94.17418.1 ID=mRNA_E-siliculosus-1a_M_contig94.17418.1|Name=mRNA_E-siliculosus-1a_M_contig94.17418.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1182bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:238836..243205+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |