mRNA_E-siliculosus-1a_M_contig94.17408.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI) HSP 1 Score: 428 bits (1101), Expect = 1.060e-149 Identity = 244/281 (86.83%), Postives = 247/281 (87.90%), Query Frame = 1 Query: 1 MRSTCVIAAAAALSCVDAFCFSPARMSGDVLAPFQAGKALKQISSQCGFPRGANSRVFAAYATGGAPH----------RAAQTARRGPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAPVSAEKATA 813
MRSTCVIAAAAALSC DAFCFSPARMSGDVLAPFQAGKALK IS F S+V A A GG H RAA+ PVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQG+TFSAEDVLEMTRKTR LLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAPVSA KATA
Sbjct: 1 MRSTCVIAAAAALSCADAFCFSPARMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAPVSAGKATA 281
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA) HSP 1 Score: 261 bits (667), Expect = 8.390e-84 Identity = 149/244 (61.07%), Postives = 180/244 (73.77%), Query Frame = 1 Query: 76 MSGDVLAPFQAGKALKQISSQCGFPRGANSRVFAAYATGGAPHR-----------AAQTARRGPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPS 774
MSGD +APF+A KALK IS F +V A GGA H A +TA +CVSA++PEL CV+AGA+MVELGNFD FYDQG+ F+A+DV+ MT+ TR LLP TPLSVT+PH L +D QV LA L+ LGVDVIQTEGK+SLDPS GG+QG IERAAP LAA +AI++AV IPVM +SG+S+VTA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A AM LP P+
Sbjct: 23 MSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPA 266
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI) HSP 1 Score: 230 bits (587), Expect = 3.180e-71 Identity = 139/236 (58.90%), Postives = 166/236 (70.34%), Query Frame = 1 Query: 85 DVLAPFQAGKALKQISSQCGFPRGANSRVFAAYATGGAPH----------RAAQTARRGPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 762
DVL PF KA K I+ F R + + AA GGA H + A + PVCVSAV+PELF V AGA MVE+GN+D FY +G TF AE+VL +TR+TR LLPT PLSVTVPHTL L DQV LA LE G D+IQTEG S P++ G+ G IE+A+PTLAAA++IS+AVSIPVM ASG+SDVTA MA+AAGA GVGVGSA+NKLNS I M+A RAIA+A+GL
Sbjct: 67 DVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLTSVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGL 302
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: A0A7S0QE85_9CRYP (Uncharacterized protein ycf23 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QE85_9CRYP) HSP 1 Score: 223 bits (569), Expect = 8.200e-69 Identity = 137/234 (58.55%), Postives = 163/234 (69.66%), Query Frame = 1 Query: 88 VLAPFQAGKALKQISSQCGFPRGANSRVFAAYATGGAPH----------RAAQTARRGPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLL-PTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 756
VL PFQ ALK IS F + S+V A + GGA H A++ P+CVS+VDP+ F A V+AGA MVE+GN+D FY +G FSAE+VL +TR+TR LL PLSVTVPHTL LD QV LA+ELE G D+IQTEG + PS GG+QG IE+AAPTLAA AI+KAV IP MAASG+S +TAP+ALAAGA GVGVGSA+NKLNS+I MVA VR I AM
Sbjct: 47 VLRPFQDKSALKIISGLKNFNSASVSQVVKAASAGGATHVDIACSAELVNLARSLTDLPICVSSVDPKEFVAAVEAGASMVEIGNYDGFYGEGRVFSAEEVLRLTRETRALLGDRIPLSVTVPHTLALDQQVSLAIELEAAGADIIQTEGGMPMKPSTGGLQGLIEKAAPTLAATAAIAKAVRIPTMAASGISYLTAPLALAAGAAGVGVGSAINKLNSDIAMVAAVREIKEAM 280
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92) HSP 1 Score: 221 bits (562), Expect = 2.380e-68 Identity = 119/183 (65.03%), Postives = 146/183 (79.78%), Query Frame = 1 Query: 232 PVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAV 780
PVCVSAV+P+LF + V+AGA+++E+GNFD FY QGI FSAEDVL +TR+TR LLP LSVTVPHTL LD+QV+LA +LE G D+IQTEG S +P+ GI G IE+A+PTLAAAHAIS+AV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN ++ M+AVVR++ A+ AV
Sbjct: 64 PVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALNRSASQAV 246
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: A0A1E5QXG4_9CHRO (Uncharacterized protein n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QXG4_9CHRO) HSP 1 Score: 219 bits (557), Expect = 1.350e-67 Identity = 118/175 (67.43%), Postives = 141/175 (80.57%), Query Frame = 1 Query: 232 PVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 756
PVCVSAV+P+LF + V+AGA+++E+GNFD FY QGI FSAEDVL +TR+TR LLP LSVTVPHTL L +QV+LA LE G D+IQTEG S P+ GI G IE+A+PTLAAAHAISKAV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN E+ M+AVVR++ A+
Sbjct: 64 PVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLNLTRQTRALLPNILLSVTVPHTLPLHEQVELAQALEAAGADIIQTEGGTSSKPNHSGILGLIEKASPTLAAAHAISKAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDEVAMMAVVRSLVEAL 238
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: I1HGD3_BRADI (Uncharacterized protein ycf23 n=2 Tax=Pooideae TaxID=147368 RepID=I1HGD3_BRADI) HSP 1 Score: 220 bits (561), Expect = 1.680e-67 Identity = 131/244 (53.69%), Postives = 164/244 (67.21%), Query Frame = 1 Query: 88 VLAPFQAGKALKQISSQCGFPRGANSRVFAAYATGGAPH----------RAAQTARRGPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAP 789
VL PF+ +ALK IS F R + + V A GGA H + A P+CVS+VDP F + V+AGA+M+E+GN+D FYD GI FS+E +L++TR+TR +LP LSVTVPHTL L DQ+ LA LE G D+IQTEG P+K G+ G IE+A PTLAAA++IS+AVSIPVM ASGLS VTAPMA+ AGA GVGVGSAVNKLN + M+A VR+IA A+G + E P
Sbjct: 49 VLRPFRENRALKIISGLQNFDRSSVASVVTAADKGGATHVDIACDQDLVKLAMELTNLPICVSSVDPSAFHSAVEAGAKMIEIGNYDSFYDMGIEFSSEQILKLTRETRKMLPDITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGGKCSSPTKPGVLGLIEKATPTLAAAYSISRAVSIPVMCASGLSSVTAPMAVTAGAAGVGVGSAVNKLNDAVAMIAEVRSIAEALGTASRNLTETP 292
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: D8SUW3_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SUW3_SELML) HSP 1 Score: 220 bits (561), Expect = 1.780e-67 Identity = 122/186 (65.59%), Postives = 148/186 (79.57%), Query Frame = 1 Query: 232 PVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAP 789
P+CVSAVDPE F A VDAGA M+E+GNFD FYD G FS+++VLE+TR+TR LLP LSVTVPHTL LD+QV LA LE G D+IQTEG + PSK GI G IE+A PTLAAA++IS+A+++PV+ ASGLS VTAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+IA AMGL +PS + P
Sbjct: 110 PICVSAVDPEAFVAAVDAGAHMIEIGNFDSFYDSGRVFSSKEVLELTRRTRELLPHITLSVTVPHTLPLDEQVQLAEALEEEGADIIQTEGGTASTPSKPGITGLIEKATPTLAAAYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGL-EPSTEKIP 294
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: D8RYP1_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYP1_SELML) HSP 1 Score: 220 bits (561), Expect = 1.780e-67 Identity = 122/186 (65.59%), Postives = 148/186 (79.57%), Query Frame = 1 Query: 232 PVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAP 789
P+CVSAVDPE F A VDAGA M+E+GNFD FYD G FS+++VLE+TR+TR LLP LSVTVPHTL LD+QV LA LE G D+IQTEG + PSK GI G IE+A PTLAAA++IS+A+++PV+ ASGLS VTAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+IA AMGL +PS + P
Sbjct: 110 PICVSAVDPEAFVAAVDAGAHMIEIGNFDSFYDSGRVFSSKEVLELTRRTRELLPHITLSVTVPHTLPLDEQVQLAEALEEEGADIIQTEGGTASTPSKPGITGLIEKATPTLAAAYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGL-EPSTEKIP 294
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Match: A0A2R6WR99_MARPO (Uncharacterized protein ycf23 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WR99_MARPO) HSP 1 Score: 220 bits (561), Expect = 5.470e-67 Identity = 132/235 (56.17%), Postives = 163/235 (69.36%), Query Frame = 1 Query: 91 LAPFQAGKALKQISSQCGFPRGANSRVFAAYATGGAPH----------RAAQTARRGPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGITFSAEDVLEMTRKTRTLLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLP 765
L F A KALK I+ F R + + V A GGA H R A + P+CVS+V PE F A V AGA MVE+GN+D FY G FSAE+VL++TR+TR+LLP LSVTVPHTL LD+QV LA +LE G D+IQTEG S PS G+ G IE+AAPTLAAA +IS+AV +PV+ ASGLSDVT+PMA+ AGA GVG+GSAVNKLN ++ M+A VR+IA ++GLP
Sbjct: 92 LKQFSARKALKVIAGLHNFDRKSVADVVIAAEKGGATHVDIACDADLVRLAASLTSLPICVSSVIPEAFVAAVHAGAHMVEIGNYDGFYKSGRVFSAEEVLDLTRRTRSLLPKVVLSVTVPHTLPLDEQVSLAEKLETAGADLIQTEGGTSSAPSAPGVHGLIEKAAPTLAAAWSISRAVKVPVICASGLSDVTSPMAITAGAAGVGIGSAVNKLNDQLAMIAAVRSIADSLGLP 326 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17408.1 >prot_E-siliculosus-1a_M_contig94.17408.1 ID=prot_E-siliculosus-1a_M_contig94.17408.1|Name=mRNA_E-siliculosus-1a_M_contig94.17408.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=272bp MRSTCVIAAAAALSCVDAFCFSPARMSGDVLAPFQAGKALKQISSQCGFPback to top mRNA from alignment at E-siliculosus-1a_M_contig94:134686..141853- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17408.1 ID=mRNA_E-siliculosus-1a_M_contig94.17408.1|Name=mRNA_E-siliculosus-1a_M_contig94.17408.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:134686..141853- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:134686..141853- >mRNA_E-siliculosus-1a_M_contig94.17408.1 ID=mRNA_E-siliculosus-1a_M_contig94.17408.1|Name=mRNA_E-siliculosus-1a_M_contig94.17408.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1632bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:134686..141853- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |