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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17406.1 vs. uniprot
Match: D7FIP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP3_ECTSI) HSP 1 Score: 513 bits (1321), Expect = 1.220e-178 Identity = 271/285 (95.09%), Postives = 275/285 (96.49%), Query Frame = 3 Query: 69 MEGFHSQKKSLRRRLIMNTLVGFLSCHDGTAFVPAAHRLGDGMSAIRSTTSRLTFPAHRSPPGMTTSDVGLHHDDKQTGKAKTSAWSGACRTAAACLATAAILSSSLPAGAASGTGGVSH-LDGGRGSSPANVLMVLADEGDFSSAGGRADVSQLVLELKKADRPDTLLNSMVKINDVVDGDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 920
M+GFHSQKKSLRR L M+TLVGFLSCHDGTAFVPAAH LG GMSAIRSTTSRLTFPAHRSPPGMTTSD GLHHDDKQTG+AKTSAWSGACRTAAACLATAAILSSSLPAGAASG+ GV H LDGGRGSSPANVLMVLADEGDFSSA GRADVSQLVLELKKADRPDTLLNSMVKINDVVD DEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN
Sbjct: 1 MDGFHSQKKSLRR-LTMHTLVGFLSCHDGTAFVPAAHMLGGGMSAIRSTTSRLTFPAHRSPPGMTTSDGGLHHDDKQTGEAKTSAWSGACRTAAACLATAAILSSSLPAGAASGSRGVRHHLDGGRGSSPANVLMVLADEGDFSSADGRADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 284
BLAST of mRNA_E-siliculosus-1a_M_contig94.17406.1 vs. uniprot
Match: A0A836CGK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK9_9STRA) HSP 1 Score: 135 bits (341), Expect = 3.880e-34 Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 3 Query: 501 AGGRADVSQLVLELKKADRPDTLLNSMVKINDVVDGDEDGVLENPFAAESIVKGLIDKRRAG---GEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVIL 914
A AD+ + EL +A D L +MVK+N+++D D DG +ENP A E +V+GL K+R GE W + + A+G+L+R+LDP+N LRPYL +APFLGG YYLA FFVQQKF FP AYF V VFVAP L +++
Sbjct: 5 ASAEADMDGALAELSRAKDADQTLTAMVKVNEILDSD-DGTMENPLAREIVVRGLSAKKREARTTGE-WRDDIDFAYGVLRRRLDPYNTFALRPYLGVAPFLGGLYYLAAFFVQQKFPEAFPLAYFSLVGVFVAPILFLLV 143
BLAST of mRNA_E-siliculosus-1a_M_contig94.17406.1 vs. uniprot
Match: A0A7S2XUD1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD1_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.630e-20 Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 3 Query: 468 MVLADEGDFSSAGGRADVSQLVLELKKADRPDTLLNSMVKINDVVDGDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVIL 914
M ++G+ + VS+ + LK ++ P + N++ I +++ DEDG L + +V+ + +K+ + W + E F ++KRKLDP+N V+L PYLK+APF+GGA YLA+ +VQQ F YAY F AP I+ L
Sbjct: 106 MQRGEQGESGQSVSVGTVSEAIEALKSSEGPRQISNALEGIYNLIQ-DEDGPLVETADKKLVVQKVREKKASSQAVWTAENEIEFSVIKRKLDPYNTVVLGPYLKVAPFVGGAIYLALIWVQQSLPRVFDYAYIVGALAFAAPIFIIAL 253
BLAST of mRNA_E-siliculosus-1a_M_contig94.17406.1 vs. uniprot
Match: A0A6T5PVA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PVA6_HETAK) HSP 1 Score: 91.3 bits (225), Expect = 3.350e-17 Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 3 Query: 519 VSQLVLELKKADRP-DTLLNSMVKINDVVDGDEDGVLENPFAAESIVKGLIDKR-RAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRG-FFPYAYFGAVAVFVAPALIVILAN 920
VSQ+V ++K + D+++ ++N + D DE VL +P + +V+ LI+K+ E WD +GILKRKLDP+N V L YL +AP+LGG YLA+ VQ+ G F AY F APA+++ LA+
Sbjct: 95 VSQIVTDIKTQQKDTDSIIGLFAEVNRMADDDE--VLIDPKDRKEVVRALIEKKANQADEKWDEQVYNGYGILKRKLDPYNTVALGGYLSVAPYLGGLLYLALVAVQRALPGRAFDVAYVVGALAFFAPAVLLALAS 229
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 1 |
Stop | 1 |
Cds size | 864 |
Model size | 1644 |
Exons | 4 |
Ec32 ortholog | Ec-27_000520.1 |
Ec32 ortholog description | conserved unknown protein |
Hectar predicted targeting category | other localisation |
Best eggNOG OG | NA|NA|NA |
Best tax level | Eukaryota |
EggNOG OGs | 2D01M@1,2SCF0@2759 |
Seed eggNOG ortholog | 2880.D7FIP3 |
Seed ortholog evalue | 1.5e-142 |
Seed ortholog score | 512.3 |
Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622936493.0531335-UTR-E-siliculosus-1a_M_contig94:124314..124373 | 1622936493.0531335-UTR-E-siliculosus-1a_M_contig94:124314..124373 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 124315..124373 + |
1696251103.0930867-UTR-E-siliculosus-1a_M_contig94:124314..124373 | 1696251103.0930867-UTR-E-siliculosus-1a_M_contig94:124314..124373 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 124315..124373 + |
1622936493.150337-UTR-E-siliculosus-1a_M_contig94:126833..127554 | 1622936493.150337-UTR-E-siliculosus-1a_M_contig94:126833..127554 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 126834..127554 + |
1696251103.151841-UTR-E-siliculosus-1a_M_contig94:126833..127554 | 1696251103.151841-UTR-E-siliculosus-1a_M_contig94:126833..127554 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 126834..127554 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622936493.0791469-CDS-E-siliculosus-1a_M_contig94:124373..124525 | 1622936493.0791469-CDS-E-siliculosus-1a_M_contig94:124373..124525 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 124374..124525 + |
1696251103.1089182-CDS-E-siliculosus-1a_M_contig94:124373..124525 | 1696251103.1089182-CDS-E-siliculosus-1a_M_contig94:124373..124525 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 124374..124525 + |
1622936493.0988014-CDS-E-siliculosus-1a_M_contig94:124938..125374 | 1622936493.0988014-CDS-E-siliculosus-1a_M_contig94:124938..125374 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 124939..125374 + |
1696251103.120013-CDS-E-siliculosus-1a_M_contig94:124938..125374 | 1696251103.120013-CDS-E-siliculosus-1a_M_contig94:124938..125374 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 124939..125374 + |
1622936493.11585-CDS-E-siliculosus-1a_M_contig94:126137..126203 | 1622936493.11585-CDS-E-siliculosus-1a_M_contig94:126137..126203 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 126138..126203 + |
1696251103.1310346-CDS-E-siliculosus-1a_M_contig94:126137..126203 | 1696251103.1310346-CDS-E-siliculosus-1a_M_contig94:126137..126203 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 126138..126203 + |
1622936493.1343572-CDS-E-siliculosus-1a_M_contig94:126623..126833 | 1622936493.1343572-CDS-E-siliculosus-1a_M_contig94:126623..126833 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 126624..126833 + |
1696251103.1419883-CDS-E-siliculosus-1a_M_contig94:126623..126833 | 1696251103.1419883-CDS-E-siliculosus-1a_M_contig94:126623..126833 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 126624..126833 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17406.1 >prot_E-siliculosus-1a_M_contig94.17406.1 ID=prot_E-siliculosus-1a_M_contig94.17406.1|Name=mRNA_E-siliculosus-1a_M_contig94.17406.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=288bp
MKTMEGFHSQKKSLRRRLIMNTLVGFLSCHDGTAFVPAAHRLGDGMSAIR STTSRLTFPAHRSPPGMTTSDVGLHHDDKQTGKAKTSAWSGACRTAAACL ATAAILSSSLPAGAASGTGGVSHLDGGRGSSPANVLMVLADEGDFSSAGG RADVSQLVLELKKADRPDTLLNSMVKINDVVDGDEDGVLENPFAAESIVK GLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAY YLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN* back to topmRNA from alignment at E-siliculosus-1a_M_contig94:124315..127554+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig94.17406.1 ID=mRNA_E-siliculosus-1a_M_contig94.17406.1|Name=mRNA_E-siliculosus-1a_M_contig94.17406.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3240bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:124315..127554+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) GCTCTCTGCTCTGTGCTTGCTTGCTGCCCGCAACGCTGTACGTCACGTTG
AGGCACACAATGAAAACCATGGAAGGATTTCATAGCCAGAAGAAGAGTTT
GCGGCGGCGGCTGATAATGAATACGCTGGTGGGATTTCTCAGTTGTCATG
ATGGGACGGCTTTCGTCCCTGCGGCACATAGGCTGGGCGACGGGATGTCG
GCTATCCGCAGGTGAGTGCGTATTGTAGTGCTTGCCGCGTTGGGCCTTGT
CAAGCCTGGAACTCCCATTGTTGTTCGTGTGTGTCGAACTTACCTGGTTC
CATGGGCTTCCGTCTGATTCAAGCAAGATCATCTGGCGTAGGCAAGTGAT
CATGTTGTGTGTGATCGTCGTTGAGGCGTGTGATCATGTTTCCCTTGTCA
CGAACACATTCACTGCTGTATGTACGTAGTCCATGCATATATGTGGCTGC
TGTACATGTGCCTGTAAACATGCAATAACAAAACAAGCCCATCTCTTTGT
ACAAGTACAACTGTATCACCGACCCATTGAAATCCTACCGCGGTCACGCG
AGCAGCAGCAAAAGGATGCCTTTGTACAAGCAATCCCTCTTTCCTCGTGC
ACCCAATCCCCTCCTTCTCAACAGCACCACCAGCAGGTTGACGTTCCCAG
CCCACCGATCACCGCCCGGCATGACCACCAGCGACGTCGGCCTCCACCAC
GATGACAAACAAACCGGGAAAGCAAAAACATCAGCCTGGTCAGGAGCCTG
CCGCACCGCGGCCGCATGCCTGGCAACCGCCGCCATCCTGTCCTCATCTC
TGCCAGCAGGCGCCGCGTCGGGCACCGGCGGTGTTAGTCATCTGGACGGC
GGACGGGGGAGCTCACCGGCGAACGTATTGATGGTGCTGGCCGACGAAGG
GGATTTTTCGTCGGCGGGCGGCAGGGCCGACGTGAGCCAGCTGGTGCTGG
AGCTGAAGAAGGCGGACAGGCCAGACACGCTGCTCAACTCGATGGTGAAG
ATCAACGACGTGGTGGACGGGGACGAGGACGGGGTGTTGGAGAACCCTTT
CGCGGCAGAGGTATGTACGGCGGTGCTGCGTTGTCTTTGGTGTTGCAAAC
CGCTCCAGTTTTTTGGCACGCTAGAAAGACTGTCACGGGTGTGATACCGT
GAGTGTGACGCCTAGGGCCACACCGATACGCTGAATATCAGCCCCCCCGT
GTACCCTTGAGTCTCACCCCGAATGATATGAACGTGGAATCGTCAGGAAG
TTTCATCAGGCAAAGTGATGCCAGCCAGCAAGTTATGATACTGCTGCAGT
GGATGATCAGGAGGCTCAGTTAATCCTGCGGCAGTACATCGAATGTACGT
GTTCCTGAGGACACAGCCAACCCTCGTTTCGACGAGTCCCAAGTCGTGAT
AGGATACTCACCCGCCGTCAAAAACGAGTCGCTCTACGTATCAACATGGC
GTGGGCGCGCGGCCGTGGTCAGTAAGTGTGTGAAGGGCTCGGCTGGACCG
TCTGTTGCTGAGTGCATCTGTTGCATTTGTTTGGTTTCTCTGTTGCCAAC
GAGAGGGTTCGCACATGGTCGCTTCCATAACACGCGTATACCTCCGCGGC
TCTTTGTGGTTTGATCGAAAGCGCGGCGATTGACAGGCAGACAGACCACT
TACATGCGGCCACGGATACTTGTAAATGCTGTGCTGGCTTGCGATGGCAT
CATGACCTTCACGAAACTGGGCTACTATATTTGTCTGTTGAGTGGTTTAT
CGCTGGCCGAGAACAAACCGATCCATCGTCTCTATCTTCCGTCTTCGCCC
CCCGTTGCTTTGGACGCTCACAGAGCATCGTCAAAGGCTTGATTGACAAG
CGGAGGGCTGGGGGTGAGGCATGGGATAGCAACACAGAGGTGAGATCACA
CCACCCGTCACATCACAGTACGAAACTCTTGGTGAAGGTGCTACAGCGAC
CCTGGGAGTTGTATCTGTGCTTCCATGTGACTATAATAGACCAGCTCTTC
GTCCGAGTGAAGTAGGGTTAAACGCGTTTTGATCACGTTGTTTCGTTCGA
GCAGAGAGTCGAAGCAGTGGCCCCACGCGTGCTGCCGAGTTACATGACTT
GACGCGTCCTATTTCTGTCTTTGAGAACCAAGTACCTGTGTAGGCGGAAG
TGAACGAAATCCAGCCGCCTGAAGGGTATCTGTAATAATCGGGTCCGGGT
AGCGCCATCATCAATCCACCGCATGACCCAAACACCTGCCCCCTCTTTCA
AACCATCAACCACTATCGCGTTATCATCCCTTGCCATCACACGACACACA
CCGCGCCAGACTGCCTTCGGCATCCTCAAGAGAAAACTGGACCCTTTCAA
CGTGGTCCTGCTACGGCCGTACCTCAAGATTGCGCCCTTCTTGGGAGGCG
CGTACTACCTGGCCGTGTTCTTCGTGCAGCAGAAGTTTAGAGGCTTCTTC
CCGTACGCGTACTTTGGAGCGGTGGCAGTGTTCGTCGCCCCGGCGCTTAT
CGTAATCCTGGCAAATTGAGCTCCATGCAGAAAGAGTTAGATATAGACGA
GCAAGAGAGGGATGGAAGGCGCTTGAATGTCCTACAAACAACGAGCAACA
GATGGGAAGTTGTTTTTCGGGAACACGTCTCTCTGTCGTTCGGCATGCCG
TATTCACTGTGTCACGTACACGTGGCGGCATCATTTTGGGACAGATATGG
AGCTACTTGCAGGAACTTTTTTCCGTTGCGGGTGTCGATGTTCGTTCGCT
GGAAACGTGTCAGCTTGCTCTTGTTGCAACAAACGTGTGTTTCTCTCTAC
TTTGGTGGTTGGCCTCGTCGAAAACAACGGAAACTCCGAAAACTTTTCAA
ACTGCTCGAGATGTCAGAAGGAAGAGTTTGTTTCGCGTTGAGACACGTGC
TGACAAACGAAGTTGATATGTAAGCGGCCCTTGCTGCCGCTGGGTGCTGG
GTGTTTGCTGGCTGTGGAATTGGTGTGATGGTCGAAATTGCAGCGTGTGC
CCTGCAACTCGCTGTGCACGCGAGTGTCCCTACCCGGGGGGAAGGGATTC
AATGTCTCCGTGATCTCTCAGCGCAGCTATGCATACAACAACCAGGCAGC
GTTATATTTTTTGTGGTGCCCCTGAGTCAAGCCAGAAACCCGAAAGTAGT
GTATCGTGTAAACGGAAGAGTGGAATACTTGCGGCTGTTGGTTCACGGCA
GCCGGACAATCTCCTGTCGGGTAGAACACTGGCACTGACG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:124315..127554+ >mRNA_E-siliculosus-1a_M_contig94.17406.1 ID=mRNA_E-siliculosus-1a_M_contig94.17406.1|Name=mRNA_E-siliculosus-1a_M_contig94.17406.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1728bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:124315..127554+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGAAAACCATGGAAGGATTTCATAGCCAGAAGAAGAGTTTGCGGCGGCG GCTGATAATGAATACGCTGGTGGGATTTCTCAGTTGTCATGATGGGACGG CTTTCGTCCCTGCGGCACATAGGCTGGGCGACGGGATGTCGGCTATCCGC AGATGAAAACCATGGAAGGATTTCATAGCCAGAAGAAGAGTTTGCGGCGG CGGCTGATAATGAATACGCTGGTGGGATTTCTCAGTTGTCATGATGGGAC GGCTTTCGTCCCTGCGGCACATAGGCTGGGCGACGGGATGTCGGCTATCC GCAGCACCACCAGCAGGTTGACGTTCCCAGCCCACCGATCACCGCCCGGC ATGACCACCAGCGACGTCGGCCTCCACCACGATGACAAACAAACCGGGAA AGCAAAAACATCAGCCTGGTCAGGAGCCTGCCGCACCGCGGCCGCATGCC TGGCAACCGCCGCCATCCTGTCCTCATCTCTGCCAGCAGGCGCCGCGTCG GGCACCGGCGGTGTTAGTCATCTGGACGGCGGACGGGGGAGCTCACCGGC GAACGTATTGATGGTGCTGGCCGACGAAGGGGATTTTTCGTCGGCGGGCG GCAGGGCCGACGTGAGCCAGCTGGTGCTGGAGCTGAAGAAGGCGGACAGG CCAGACACGCTGCTCAACTCGATGGTGAAGATCAACGACGTGGTGGACGG GGACGAGGACGGGGTGTTGGAGAACCCTTTCGCGGCAGAGCACCACCAGC AGGTTGACGTTCCCAGCCCACCGATCACCGCCCGGCATGACCACCAGCGA CGTCGGCCTCCACCACGATGACAAACAAACCGGGAAAGCAAAAACATCAG CCTGGTCAGGAGCCTGCCGCACCGCGGCCGCATGCCTGGCAACCGCCGCC ATCCTGTCCTCATCTCTGCCAGCAGGCGCCGCGTCGGGCACCGGCGGTGT TAGTCATCTGGACGGCGGACGGGGGAGCTCACCGGCGAACGTATTGATGG TGCTGGCCGACGAAGGGGATTTTTCGTCGGCGGGCGGCAGGGCCGACGTG AGCCAGCTGGTGCTGGAGCTGAAGAAGGCGGACAGGCCAGACACGCTGCT CAACTCGATGGTGAAGATCAACGACGTGGTGGACGGGGACGAGGACGGGG TGTTGGAGAACCCTTTCGCGGCAGAGAGCATCGTCAAAGGCTTGATTGAC AAGCGGAGGGCTGGGGGTGAGGCATGGGATAGCAACACAGAGAGCATCGT CAAAGGCTTGATTGACAAGCGGAGGGCTGGGGGTGAGGCATGGGATAGCA ACACAGAGACTGCCTTCGGCATCCTCAAGAGAAAACTGGACCCTTTCAAC GTGGTCCTGCTACGGCCGTACCTCAAGATTGCGCCCTTCTTGGGAGGCGC GTACTACCTGGCCGTGTTCTTCGTGCAGCAGAAGTTTAGAGGCTTCTTCC CGTACGCGTACTTTGGAGCGGTGGCAGTGTTCGTCGCCCCGGCGCTTATC GTAATCCTGGCAAATTGAACTGCCTTCGGCATCCTCAAGAGAAAACTGGA CCCTTTCAACGTGGTCCTGCTACGGCCGTACCTCAAGATTGCGCCCTTCT TGGGAGGCGCGTACTACCTGGCCGTGTTCTTCGTGCAGCAGAAGTTTAGA GGCTTCTTCCCGTACGCGTACTTTGGAGCGGTGGCAGTGTTCGTCGCCCC GGCGCTTATCGTAATCCTGGCAAATTGA back to top
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