mRNA_E-siliculosus-1a_M_contig94.17404.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE) HSP 1 Score: 390 bits (1002), Expect = 5.510e-136 Identity = 204/211 (96.68%), Postives = 207/211 (98.10%), Query Frame = 1 Query: 97 MLGGNVVVVVSALLATSSTFVSSLVHSRSTTQLSRGWSAWRRRSPSGTRRNSETGRRRELTCGLQITVRIRGKKSREEDYTNQQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 729
MLGGNVVVVVSALLATS+TFVSSLVHSRSTTQLSR SAWRRRSPSGTRR SETGR+RELTCGLQITVRIRGKKSREEDYTNQ AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDF+FSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE
Sbjct: 1 MLGGNVVVVVSALLATSTTFVSSLVHSRSTTQLSRESSAWRRRSPSGTRRYSETGRKRELTCGLQITVRIRGKKSREEDYTNQ-AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFVFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 210
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: D7FIP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP1_ECTSI) HSP 1 Score: 262 bits (670), Expect = 8.820e-86 Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 Query: 340 NQQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 729
++QAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE
Sbjct: 60 SKQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: W7TG35_9STRA (Ribosomal rna large subunit methyltransferase h n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG35_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.090e-54 Identity = 92/150 (61.33%), Postives = 113/150 (75.33%), Query Frame = 1 Query: 280 CGLQITVRIRGKKSREEDYTNQQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 729
CGLQ+T+ IRGK+S E++ N AY EY KRLRPVL L T WHKTD +LEAA+ K+ V+CLDEGG+Q++S +D L+ +LEEGG+RL+ V+GGAEGLPP L+ SLS +TFTH WAR LLAEQIYRASEI+RGS YHKE
Sbjct: 69 CGLQVTIHIRGKRSGGEEFLND-AYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A835ZC53_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC53_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.160e-49 Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 1 Query: 277 TCGLQITVRIRGKKSREEDYTNQQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
TCG ++T+ IRGK EE +DEY KRLRP L L T WHKTD D+EAAV ++ V+C+DE G+Q++S +FS++L+ KLE GGSRL FV+GGAEGLP +K + + K+SLS M TH WA ALL+EQIYRA+EIR+G+KYHK
Sbjct: 27 TCGPRVTIHIRGK---EERGFLADGHDEYVKRLRPTLQLTTVWHKTDSDMEAAVFREQCPVICMDERGKQLDSTSFSEYLYKKLEIGGSRLAFVIGGAEGLPASMKAEKSYD--KMSLSKMVLTHTWAWALLSEQIYRATEIRKGTKYHK 171
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA) HSP 1 Score: 167 bits (422), Expect = 3.350e-48 Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 250 SETGRRRELTCGLQITVRIRGKKSREEDYTNQQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
S +R +TCGL++T+ IRGKKS ED+ + DEY KRLR L L T+W+K D L V+K+ GV+V LDE G+ +NS FS ++ LE+GGSRL FV+GGAEGLPP LK + H +SLS MTFTH AR +LAEQIYRA+EIR+G+ YHK
Sbjct: 37 SRAPKRGFMTCGLEVTIHIRGKKSGGEDWIST-GIDEYQKRLRSTLKLQTKWYKDDSALIQGVKKEKGVIVTLDERGKLLNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLPPSLKTEAKH---LISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A7S2R9V3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V3_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.210e-39 Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 1 Query: 352 YDEYAKRLRPV-LALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
Y EY KRL+P + L T WH+TD L AAV V+CLD G Q +S FSD LFSKLE+GGSRL FV+GGAEGLPP LK+ G +SLS +TFTH AR LLAEQ+YRA+EIRRGS YHK
Sbjct: 12 YAEYEKRLKPQQVELVTVWHRTDQQLLAAVEGSKAPVICLDPTGAQWSSERFSDMLFSKLEDGGSRLMFVIGGAEGLPPELKRS----GNLMSLSKLTFTHQMARMLLAEQVYRAAEIRRGSGYHK 133
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A7S2F628_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F628_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.670e-35 Identity = 76/167 (45.51%), Postives = 112/167 (67.07%), Query Frame = 1 Query: 247 NSETGRRRELTCGLQITVRIRGKKSREEDYTNQQAYDEYAKRLRPV-LALDTQWHKTDDDLEAAVR---KDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQK--PPHGGAK-LSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
N+ R+ +T LQ+T+ I+G+K + N+ A+++YA RL P + L T WHK++D L A++ ++P +CLD G+Q++S F L+ +L EGGSRL FV+GGAEGLP +++K P + +SLSSMTFTH AR +LAEQ+YRA+EIR+G+ YHK
Sbjct: 41 NNNRSGRQCITAALQVTLHIQGRKINDH---NEVAFEQYAMRLTPHRIQLKTVWHKSNDQLTKAIKATSREP--CICLDVCGQQLDSGGFEQLLYQRLVEGGSRLAFVIGGAEGLPDEVREKKDPKLQHVEFISLSSMTFTHQMARVILAEQVYRAAEIRKGTGYHK 202
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: UPI001BC8D685 (23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC8D685) HSP 1 Score: 125 bits (314), Expect = 1.190e-32 Identity = 69/126 (54.76%), Postives = 86/126 (68.25%), Query Frame = 1 Query: 349 AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
A +EY KRL+ + ++ W K D L A V ++P +VVCLD G+ ++S FS FL KLEEGGSRLTFV+GGAEGLP LKQ +SLS +TFTH AR +L EQIYRA EI +GS+YHK
Sbjct: 20 AIEEYQKRLQGQVEMEWVWAKDDPQLMALVSREP-LVVCLDPQGKMLSSEQFSSFLMRKLEEGGSRLTFVIGGAEGLPLFLKQNKE----AISLSLLTFTHQIARVVLIEQIYRALEIAKGSRYHK 140
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A7W1YWG3_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YWG3_9BACT) HSP 1 Score: 124 bits (312), Expect = 2.310e-32 Identity = 67/126 (53.17%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 349 AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
A +EY KRL P+ L QW K D L K+P +++CLD G ++S FS FL KL+ GGSRLTF++GGA+GLP LK P LSLS MTFTH R +L EQIYRA EI RGS+YHK
Sbjct: 20 ALNEYVKRLTPIATLSFQWAKDDQHLLDIALKEP-LLICLDPQGSSLSSEEFSSFLHQKLQLGGSRLTFIIGGADGLPTTLKSSP-----LLSLSKMTFTHQITRLILVEQIYRAFEIARGSQYHK 139
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Match: A0A7S2XIV0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIV0_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.170e-32 Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 1 Query: 265 RRELTCGLQITVRIRGKKSREEDYTNQQAYDEYAKRLRPV-LALDTQWHKTDDDLEAAVRKDPG---VVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQ---KPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHK 726
R L G+++ +RI G+K+ E + + AY Y RLRP + ++T WHK D +L V+ D VV LD G+ S FS+ +++ L++GGSRL+FV+GGAEGLP L+ P SLS++TFTH +AR LL EQIYRASEIR+GS YHK
Sbjct: 52 RSSLCMGMEVRIRIVGRKNGSEKWL-EDAYSMYETRLRPSNIDVETIWHKNDQELIKGVKGDSDKGHTVVLLDPRGKPRTSEQFSENMYTWLDQGGSRLSFVIGGAEGLPYELRDGSYNPKKSLILFSLSALTFTHQFARTLLMEQIYRASEIRKGSGYHK 211 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17404.1 >prot_E-siliculosus-1a_M_contig94.17404.1 ID=prot_E-siliculosus-1a_M_contig94.17404.1|Name=mRNA_E-siliculosus-1a_M_contig94.17404.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=212bp MLGGNVVVVVSALLATSSTFVSSLVHSRSTTQLSRGWSAWRRRSPSGTRRback to top mRNA from alignment at E-siliculosus-1a_M_contig94:116107..118710+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17404.1 ID=mRNA_E-siliculosus-1a_M_contig94.17404.1|Name=mRNA_E-siliculosus-1a_M_contig94.17404.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2604bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:116107..118710+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:116107..118710+ >mRNA_E-siliculosus-1a_M_contig94.17404.1 ID=mRNA_E-siliculosus-1a_M_contig94.17404.1|Name=mRNA_E-siliculosus-1a_M_contig94.17404.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1272bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:116107..118710+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |