mRNA_E-siliculosus-1a_M_contig94.17403.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17403.1 vs. uniprot
Match: D7FIP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP0_ECTSI) HSP 1 Score: 655 bits (1690), Expect = 5.710e-234 Identity = 335/351 (95.44%), Postives = 338/351 (96.30%), Query Frame = 2 Query: 44 MADTNSQTNEWSSWSDLETRGGGEADLASLPAAVRAIVEECRAKSTNPPHPEQPAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRGEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPAAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSPETGTENSSASGRNGGEQAATSAGNDQRNTAALLAICRLAASVAASVRGDADPVEFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAVF 1096
MADT SQ NE SSWSD ETRGGGEADL+SLPAAVRAIVEECRAKS NPP PEQ AGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRR EGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDP AIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTS ETGT++SSASGRNGGEQAATSAGN QRNTAALLAICRLAASVAASVRGDADPV FRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGA F
Sbjct: 1 MADTTSQENECSSWSDFETRGGGEADLSSLPAAVRAIVEECRAKSANPPPPEQQAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRAEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPTAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSSETGTKDSSASGRNGGEQAATSAGNGQRNTAALLAICRLAASVAASVRGDADPVAFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAAF 351 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17403.1 >prot_E-siliculosus-1a_M_contig94.17403.1 ID=prot_E-siliculosus-1a_M_contig94.17403.1|Name=mRNA_E-siliculosus-1a_M_contig94.17403.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=352bp MADTNSQTNEWSSWSDLETRGGGEADLASLPAAVRAIVEECRAKSTNPPHback to top mRNA from alignment at E-siliculosus-1a_M_contig94:113356..115978- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17403.1 ID=mRNA_E-siliculosus-1a_M_contig94.17403.1|Name=mRNA_E-siliculosus-1a_M_contig94.17403.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2623bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:113356..115978- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:113356..115978- >mRNA_E-siliculosus-1a_M_contig94.17403.1 ID=mRNA_E-siliculosus-1a_M_contig94.17403.1|Name=mRNA_E-siliculosus-1a_M_contig94.17403.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2112bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:113356..115978- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |