mRNA_E-siliculosus-1a_M_contig93.17389.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: D8LSQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ7_ECTSI) HSP 1 Score: 204 bits (519), Expect = 5.120e-54 Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 3 Query: 195 ISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLGDVALPPGLKGIII 533
+STTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSAR+ RASRVPALHAREVLWILPASMLNATSDSL+LSNLQLLSFVGANFNDSL VALP GLKGIII
Sbjct: 1 MSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARVCRASRVPALHAREVLWILPASMLNATSDSLKLSNLQLLSFVGANFNDSLSGVALPRGLKGIII 113
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5KRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT6_9PHAE) HSP 1 Score: 161 bits (407), Expect = 2.620e-40 Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 3 Query: 126 GSSRCLDAFVVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHARE-VLWILPASML 413
GSSRCLDAF+VALNETCH+GKCI STTALQLASLQFCVACRSAS VRLRIDTDTPR+LWAKDSGPQARRSA IRRASRVPALH E V W P+S+L
Sbjct: 3 GSSRCLDAFIVALNETCHEGKCITSTTALQLASLQFCVACRSASPVRLRIDTDTPRYLWAKDSGPQARRSAMIRRASRVPALHTSENVAW--PSSLL 97
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.020e-15 Identity = 61/140 (43.57%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 153 VVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQAR------------RSARIRRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGA--NFNDSLGDVALPPGLKGII 530
+VALNET + IST LQLAS++FCVACRS ST+ L ++ TPRHLWA Q+ RS +R VP REV W LP SML+ S NL+ +SF A DS VALP GLK ++
Sbjct: 1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVR----VPPFRPREVTWNLPPSMLSEASKDA-FKNLECMSFSDAVERSGDSFDGVALPRGLKSVV 135
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 3.940e-14 Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 3 Query: 108 MEQAQPGSSRCLDAFVVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHAREVLWILPASMLNATSDSLQL-SNLQLLSFVGANFNDSL 491
++ QPG +RCLDAFVVALN++C K S LQLASL FCVACR+ L +D TP LW GP + +RVPA+ REV+W L D + L S+L+ ++F G +FN +
Sbjct: 26 IDNLQPGLNRCLDAFVVALNQSCDGKKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWC---GPCTTPLEVLTTVTRVPAIRVREVVW-----KLTERKDGIALPSSLRRITF-GRDFNQRI 145
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 4.490e-13 Identity = 58/156 (37.18%), Postives = 77/156 (49.36%), Query Frame = 3 Query: 81 ATKTRVGGGME-------QAQPGSSR--CLDAFVVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLGDVALPPGLK 521
A K R GG+ + Q G +R CL+A +VALNETC ST LQLASL FC+ACR+ TV L +D PR L A P +RVP L +R V W +P + + +++++ L F G F DSL V P L+
Sbjct: 23 ARKNRRNGGVLMRPSTILRVQKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLC--WTRVPRLRSRRVTWNMPTAA-KLRTPIFAMTDMEYLEF-GDAFGDSLEAVPWPEHLR 174
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 7.400e-13 Identity = 55/137 (40.15%), Postives = 72/137 (52.55%), Query Frame = 3 Query: 123 PGSSRCLDAFVVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHAREVLWILP--ASMLNATSDSLQLSNLQLLSFVGANFNDSLGDVALPPGLKGI 527
P CL+A +VALNET ST QLASL+FC+ACR+ T+ L++D+ TPR L A P +RVP L AR V W +P A + N+ + +L+ FV A F DSL VA P LK +
Sbjct: 7 PARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLC--GTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLE---FVRA-FEDSLEAVAWPRRLKTV 137
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.560e-12 Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 3 Query: 123 PGSSRCLDAFVVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHAREVLW 392
P S CL+A V+ALNETC+ ST LQLASL+FCVACR+ T+ L++D PR L A+ P R +RVP L AR V W
Sbjct: 108 PSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCR--TRVPRLRARRVTW 195
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5KSG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG0_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.980e-12 Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 3 Query: 1467 AFPIPAGDFSXXXXXXXXXFVCYSDDVLPAVPGVEVCRVQPRVGRWPLYGG 1619
A P P GD SXXXXXXXXX CYSDD LPAVPGVEVCR QPRVGRWPLYGG
Sbjct: 31 AQPGPTGDLSXXXXXXXXXXXCYSDDQLPAVPGVEVCRAQPRVGRWPLYGG 81
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 6.780e-12 Identity = 57/136 (41.91%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 129 SSRCLDAFVVALNETCHDGKC-IISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQA----RRSARIRRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLGDVALPPGLK 521
SSRCL+AF VAL +TC D + +STT LQLASL FC+ACR + T+ L +D PR L A G +A + R SRVP HAREV W S + ++ L+ + G FN ++G VA P L+
Sbjct: 27 SSRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGR-SRVPRFHAREVTWH-RQSCVELSASIYALAEVDFFILDGG-FNRAIGAVAWPRKLR 159
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 6.990e-12 Identity = 55/139 (39.57%), Postives = 69/139 (49.64%), Query Frame = 3 Query: 123 PGSSRCLDA---FVVALNETCHDGKCIISTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARIRRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLGDVALPPGLKGII 530
P RC ++ALNE C + ST LQLASL+FC+ACR + L++D TPR+L A P R +RVP L AR V W +P + T L ++ L F G FN SL V PP LK II
Sbjct: 9 PAGRRCSSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCR--TRVPRLRARRVKWNMPTATELRTL-MFALKDVNCLRFGGV-FNGSLEAVVWPPPLKQII 143 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17389.1 >prot_E-siliculosus-1a_M_contig93.17389.1 ID=prot_E-siliculosus-1a_M_contig93.17389.1|Name=mRNA_E-siliculosus-1a_M_contig93.17389.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=505bp MEQAQPGSSRCLDAFVVALNETCHDGKCIISTTALQLASLQFCVACRSASback to top mRNA from alignment at E-siliculosus-1a_M_contig93:662986..668193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17389.1 ID=mRNA_E-siliculosus-1a_M_contig93.17389.1|Name=mRNA_E-siliculosus-1a_M_contig93.17389.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5208bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:662986..668193- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:662986..668193- >mRNA_E-siliculosus-1a_M_contig93.17389.1 ID=mRNA_E-siliculosus-1a_M_contig93.17389.1|Name=mRNA_E-siliculosus-1a_M_contig93.17389.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3030bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:662986..668193- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |