mRNA_E-siliculosus-1a_M_contig93.17388.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A6H5L5K3_9PHAE (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5K3_9PHAE) HSP 1 Score: 539 bits (1389), Expect = 3.740e-183 Identity = 260/269 (96.65%), Postives = 263/269 (97.77%), Query Frame = 1 Query: 142 MAPNNKAVSVGTHPHGGGDQASTGQKCPFASLAPQAAS--SGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSYGRPAVVTRDKKFL 942
MAPNNKAVS GTHPHGGGDQASTGQKCPFASL PQAA SGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMW+GDRWTQYALTLFAAGYMVLDACWILCNPSGVKSP+TVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPM+LGSYLAWVGICIFQGWWSCALVRSYGRPAV TRDKKFL
Sbjct: 1 MAPNNKAVSAGTHPHGGGDQASTGQKCPFASLGPQAARRVSGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWKGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPRTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAVATRDKKFL 269
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A835Z8V7_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V7_9STRA) HSP 1 Score: 244 bits (623), Expect = 2.190e-69 Identity = 121/201 (60.20%), Postives = 142/201 (70.65%), Query Frame = 1 Query: 310 YVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGG--LLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSYG 906
+ G A++HDDMNL VL GMAL + AM+ DR QY LT+FA YMV DA WILCN VKSP+TVLGHH ATL+VL+DP + PQHA YT ALLVE NTFLLI RRR WG L+E PF SWVALRLIWYPFL F++ +C FP L +YP +V+WR +E D V +Y SY AWVGIC+FQ WWS L R+YG
Sbjct: 56 WTAGRGAQLHDDMNLVVLLGMALTSMVAMYTRDRALQYGLTVFAVAYMVTDAAWILCNMRAVKSPRTVLGHHAATLAVLIDPYMHPQHALYTCWALLVEANTFLLIARRRFRWGASALVEAPFVASWVALRLIWYPFLAFFWGLCAFPG-LADVYPAAIVRWRLRIEVDL-VRLYPASYAAWVGICVFQLWWSAQLFRNYG 254
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A7S4PA72_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA72_GUITH) HSP 1 Score: 172 bits (437), Expect = 1.500e-44 Identity = 99/230 (43.04%), Postives = 134/230 (58.26%), Query Frame = 1 Query: 280 HAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERL---VQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSY----GR--PAVVTRDKKFL 942
+A +Q + A+ +HD++NL L + A A+ DR LT+ Y++LD+ WI P VKSP V HH+ATL VL+DPLLQP+H YT+ LLVE NT LL+LRRRVS+ ++EVPF L+WV LR IWYP L FYF +C P T L P L ++ R +E PVPM S L+W +CIFQ +W+ L ++ GR P ++KK+L
Sbjct: 52 YAERKRQSLSWQPSPASDLHDNVNLIALFLLGGGAIAALALQDRNMHDLLTVSGFVYILLDSVWIFSQPKIVKSPGMVGSHHIATLLVLLDPLLQPKHRVYTSACLLVEINTLLLLLRRRVSYSAIVEVPFILTWVLLRNIWYPLLMFYFFLCFSPSTFIPLLPSSLSWVIEMRTKIELRNPVPMMGVSLLSWAMVCIFQFYWTAQLFSAHPWIWGRRKPTANGKEKKYL 281
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A7S0VYL2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYL2_9CRYP) HSP 1 Score: 169 bits (428), Expect = 1.730e-43 Identity = 85/208 (40.87%), Postives = 126/208 (60.58%), Query Frame = 1 Query: 325 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSY----GRPAVVTRDKK 936
A+ +HD NL VL+ + + +A+ + + LT Y++LD+ W+L P+ VKSP V+ HH ATL VL+DPLL P H+ YT+ LLVE NT LL+LRR++S+ L+EVPF +SWV LR +WYP L F+F +C+ P TL L+P +V+ R +E VPM S ++W +C+ Q W+ L + GR R+++
Sbjct: 50 ASELHDSCNLFVLSLLGFGSVYALLTNHQASHRLLTTVGFMYVLLDSAWLLAVPTVVKSPGVVIAHHAATLLVLLDPLLSPSHSVYTSACLLVEINTLLLLLRRKMSYSVLVEVPFIISWVLLRNVWYPLLMFFFILCSAPGTLGPLFPRAMVEARRRIEGPEAVPMRFVSMVSWTAVCVLQLKWTGQLFAQHPWFGGRNKARDRERR 257
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A7S2V1S4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S4_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.290e-37 Identity = 85/235 (36.17%), Postives = 130/235 (55.32%), Query Frame = 1 Query: 226 FASLAPQAASSGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYA--LTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQP-----QHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSYGR 909
F ++ P+ +S S H +K + + +HD +NL L +A +A + +T Y+ LDA WI PS +KSP TV HH++TL++L+ P+ +YTA A++VE NT LL +RR+ +G +E+PFALSWV +RL+WYP LGFYF +C F + L P+ ++ R +E P P++ S +A+V IC+FQ +WS LV+S+ R
Sbjct: 10 FDNVGPEKCNSRNSIFQQHVPEKLEKGGWNPSKLSELHDSINLVWLTVLASLAIVVLLSFPTCHSLLVLMTTLTTVYIALDAIWIFMFPSSIKSPVTVCLHHISTLAILLGPIFNAISGSGLQGYYTAAAIIVEANTVLLTMRRKFKFGLWVEIPFALSWVLIRLVWYPILGFYFMVCAFHSVRELLAPQFILHIRETIEGPEPEPLWKLSAMAFVLICMFQIFWSVPLVKSWMR 244
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A7S2B6S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6S7_9STRA) HSP 1 Score: 114 bits (284), Expect = 5.280e-25 Identity = 66/192 (34.38%), Postives = 105/192 (54.69%), Query Frame = 1 Query: 325 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRS 900
AA +HD++N+ + + + AA+++ G +T A Y++ D W++ P VKSP ++ HH+ TL+VL DP+ H Y +CALLVE NT L+ LRRR+ EV F +W+ALRLIW+P L ++F +FPE + P F + + P+ + + + I + Q +W+ AL S
Sbjct: 11 AADLHDNINVVITSLIFFSAAFSL-AGLPPGHTVVTFGATAYIIFDIVWVMSQPRIVKSPVEIILHHLGTLAVLYDPITVLNHQKYASCALLVEVNTVLITLRRRLGRPMWCEVSFLATWLALRLIWFPCLSYWFLCSSFPEVF--VMP-------FGIARENNPPIDTSTTVFFCLIVLLQFYWTFALGSS 192
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A812KK43_9DINO (NMA1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812KK43_9DINO) HSP 1 Score: 111 bits (278), Expect = 1.630e-23 Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 1 Query: 325 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTL-FAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPET--LKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSYGRPAVVTRDKK 936
A +HD +N+A L + ++A A+ G+ + + + + A Y+V DA WI P VK+P +V+ HH+ TL V+V+P+ H + ALLVE NT LL LRR + E+ F L+W +RLIW+P LG TF T L AL P V E RP + + L++ + + Q +W+CA+ R + +K
Sbjct: 16 AGLLHDWVNVAALTAIFALSAAALESGEESSLHTIVIAVTAAYLVSDALWIALQPDMVKTPVSVILHHLVTLIVIVEPMFYESHRVNASRALLVEINTVLLTLRRLLGRPAWCELGFYLTWAVIRLIWFPALGTALLASTFGWTSPLAALPPPLTA----LVVEVRPPAIRSYASLSFAAVVMLQFYWTCAMGRGMCKSGANKESRK 218
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A812JJT5_9DINO (Nicotinamide-nucleotide adenylyltransferase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812JJT5_9DINO) HSP 1 Score: 112 bits (279), Expect = 2.210e-21 Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 1 Query: 325 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTL-FAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPET--LKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRSYGRPAVVTRDKK 936
A +HD +N+A L + ++A A+ G+ + + + + A Y+V DA WI P VK+P +V+ HH+ TL V+V+P+ H + ALLVE NT LL LRR + E+ F L+W +RLIW+P LG TF T L AL P V E RP + + L++ + + Q +W+CA+ R + +K
Sbjct: 16 AGLLHDWVNVAALTAIFALSAAALESGEESSLHTIVIAVTAAYLVSDALWIALQPDMVKTPVSVILHHLVTLIVIVEPMFYESHRVNASRALLVEINTVLLTLRRLLGRPAWCELGFYLTWAVIRLIWFPALGTALLASTFGWTSPLAALPPPLTA----LVVEVRPPAIRSYASLSFAAVVLLQFYWTCAMGRGMCKSGANRESRK 218
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A813G2R2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2R2_POLGL) HSP 1 Score: 101 bits (251), Expect = 3.250e-20 Identity = 65/193 (33.68%), Postives = 103/193 (53.37%), Query Frame = 1 Query: 325 AARIHDDMNLAVLAGMALMAAWAMWEGDR--WTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTF--PETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCAL 891
A +HD +N+ VL+ + ++A+ + G+ W A+ + A Y+ D WI NPS VK+PK +L HH TL V++D + H + AL+VE NT LL LRR + E+ F L+WV +RL+W+P LG T+ + L AL RL F + D PV Y + +++ + + Q +W+ +
Sbjct: 34 AGLVHDWVNIGVLSLVFVLASIGILSGEDSVWHTVAIAVMCA-YLAGDVVWIAVNPSMVKTPKAILAHHAVTLIVIMDTIESASHRANASHALIVEINTVLLTLRRILGRPLWCEIGFYLTWVGIRLVWFPALGAALLASTWGRQDELAALLAPRLPALLFKMP-DPPVRSY--ASISFAVVVVLQFYWTIVI 222
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Match: A0A7S0ASE2_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ASE2_9DINO) HSP 1 Score: 99.4 bits (246), Expect = 3.310e-19 Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 337 HDDMNLAVLAGMALMAAWAMWEG-DRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTF--PETLKALYPERLVQWRFAVEEDRPVPMYLGSYLAWVGICIFQGWWSCALVRS 900
HD +N+ L + MA+ ++W G D + +F + Y+V D W+ P+ V++P +++ HHV TL V+ + H + ALLVE NT LL LRRR+ E F +W LRL+W+P L TF + L+A P L+ V+ P P+ + +++ + + Q +W+ L+RS
Sbjct: 28 HDWVNVVTLCLIFAMASASLWSGEDSLGHTMVVVFTSTYLVCDIVWVTLQPAIVRTPGSIVAHHVVTLVVIYGTVENVTHRVNASRALLVEINTVLLTLRRRLGRPVWCEAAFYATWGLLRLVWFPILSVAMLASTFGFADQLRASMPACLL-----VDVRSPPPIKAYASISFAAVVVLQYYWTFTLLRS 213 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17388.1 >prot_E-siliculosus-1a_M_contig93.17388.1 ID=prot_E-siliculosus-1a_M_contig93.17388.1|Name=mRNA_E-siliculosus-1a_M_contig93.17388.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=268bp MAPNNKAVSVGTHPHGGGDQASTGQKCPFASLAPQAASSGGSNRNPHAVLback to top mRNA from alignment at E-siliculosus-1a_M_contig93:654399..663030+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17388.1 ID=mRNA_E-siliculosus-1a_M_contig93.17388.1|Name=mRNA_E-siliculosus-1a_M_contig93.17388.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8632bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:654399..663030+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:654399..663030+ >mRNA_E-siliculosus-1a_M_contig93.17388.1 ID=mRNA_E-siliculosus-1a_M_contig93.17388.1|Name=mRNA_E-siliculosus-1a_M_contig93.17388.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1608bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:654399..663030+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |