mRNA_E-siliculosus-1a_M_contig93.17379.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17379.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17379.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:547659..547826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size117
Model size168
Exons1
Ec32 orthologEc-15_002840.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936486.1824877-UTR-E-siliculosus-1a_M_contig93:547658..5477091622936486.1824877-UTR-E-siliculosus-1a_M_contig93:547658..547709Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 547659..547709 -
1696251100.0683122-UTR-E-siliculosus-1a_M_contig93:547658..5477091696251100.0683122-UTR-E-siliculosus-1a_M_contig93:547658..547709Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 547659..547709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936486.2027574-CDS-E-siliculosus-1a_M_contig93:547709..5478261622936486.2027574-CDS-E-siliculosus-1a_M_contig93:547709..547826Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 547710..547826 -
1696251100.0762594-CDS-E-siliculosus-1a_M_contig93:547709..5478261696251100.0762594-CDS-E-siliculosus-1a_M_contig93:547709..547826Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 547710..547826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17379.1prot_E-siliculosus-1a_M_contig93.17379.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 547710..547826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17379.1

>prot_E-siliculosus-1a_M_contig93.17379.1 ID=prot_E-siliculosus-1a_M_contig93.17379.1|Name=mRNA_E-siliculosus-1a_M_contig93.17379.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=39bp
TSGDFCLRAPRRLIRPTDPPQPNGRNPLVLGDAIQSKK*
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mRNA from alignment at E-siliculosus-1a_M_contig93:547659..547826-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17379.1 ID=mRNA_E-siliculosus-1a_M_contig93.17379.1|Name=mRNA_E-siliculosus-1a_M_contig93.17379.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:547659..547826- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCAGCGGGGATTTCTGTTTGCGTGCCCCTCGGCGTCTGATCCGACCTAC
CGATCCACCGCAGCCGAATGGCCGTAATCCTTTGGTGCTTGGGGATGCCA
TCCAATCCAAGAAATGAACGGATCATTGTGGCTCGCCATTGCTTCGGCAC
CTGACTGACCAAGCGGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:547659..547826-

>mRNA_E-siliculosus-1a_M_contig93.17379.1 ID=mRNA_E-siliculosus-1a_M_contig93.17379.1|Name=mRNA_E-siliculosus-1a_M_contig93.17379.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:547659..547826- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCAGCGGGGATTTCTGTTTGCGTGCCCCTCGGCGTCTGATCCGACCTAC
CGATCCACCGCAGCCGAATGGCCGTAATCCTTTGGTGCTTGGGGATGCCA
TCCAATCCAAGAAATGAACCAGCGGGGATTTCTGTTTGCGTGCCCCTCGG
CGTCTGATCCGACCTACCGATCCACCGCAGCCGAATGGCCGTAATCCTTT
GGTGCTTGGGGATGCCATCCAATCCAAGAAATGA
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