Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17378.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI) HSP 1 Score: 385 bits (990), Expect = 1.410e-129 Identity = 193/204 (94.61%), Postives = 196/204 (96.08%), Query Frame = 1 Query: 235 MIQAGVGAAALERGEEGSLIAGTEPRRKGWVAPALAAAVGVALLLVCGLSAH-AREDASAAGAA--PMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWTGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSTLAGHPSQACGSTVPFMCLSGAATWGCANNELAWASTPSTTCGECCDVRGC 837
MIQAG GAAALERGEEGSLIAGTEPRRKGWV PALAAAVGVALLL CGLSAH AREDASAAGAA PMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTW+GGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCS LAGHPSQACGSTVPF+CLSGAATWGCA+NELAWASTPSTTCGECCDV GC
Sbjct: 1 MIQAGAGAAALERGEEGSLIAGTEPRRKGWVVPALAAAVGVALLLACGLSAHHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 1 |
Stop | 1 |
Cds size | 681 |
Model size | 1674 |
Exons | 4 |
Ec32 ortholog | Ec-15_002830.1 |
Ec32 ortholog description | conserved unknown protein |
Hectar predicted targeting category | signal anchor |
Best eggNOG OG | NA|NA|NA |
Best tax level | Eukaryota |
EggNOG OGs | 2E594@1,2SC37@2759 |
Seed eggNOG ortholog | 2880.D8LSS0 |
Seed ortholog evalue | 1.9e-105 |
Seed ortholog score | 388.7 |
Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622936486.0601707-UTR-E-siliculosus-1a_M_contig93:543950..544109 | 1622936486.0601707-UTR-E-siliculosus-1a_M_contig93:543950..544109 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 543951..544109 + |
1696251099.9964232-UTR-E-siliculosus-1a_M_contig93:543950..544109 | 1696251099.9964232-UTR-E-siliculosus-1a_M_contig93:543950..544109 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 543951..544109 + |
1622936486.139516-UTR-E-siliculosus-1a_M_contig93:546324..547158 | 1622936486.139516-UTR-E-siliculosus-1a_M_contig93:546324..547158 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 546325..547158 + |
1696251100.0603056-UTR-E-siliculosus-1a_M_contig93:546324..547158 | 1696251100.0603056-UTR-E-siliculosus-1a_M_contig93:546324..547158 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 546325..547158 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622936486.0801091-CDS-E-siliculosus-1a_M_contig93:544109..544359 | 1622936486.0801091-CDS-E-siliculosus-1a_M_contig93:544109..544359 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 544110..544359 + |
1696251100.0092456-CDS-E-siliculosus-1a_M_contig93:544109..544359 | 1696251100.0092456-CDS-E-siliculosus-1a_M_contig93:544109..544359 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 544110..544359 + |
1622936486.0951037-CDS-E-siliculosus-1a_M_contig93:545030..545160 | 1622936486.0951037-CDS-E-siliculosus-1a_M_contig93:545030..545160 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 545031..545160 + |
1696251100.020279-CDS-E-siliculosus-1a_M_contig93:545030..545160 | 1696251100.020279-CDS-E-siliculosus-1a_M_contig93:545030..545160 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 545031..545160 + |
1622936486.10959-CDS-E-siliculosus-1a_M_contig93:545618..545830 | 1622936486.10959-CDS-E-siliculosus-1a_M_contig93:545618..545830 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 545619..545830 + |
1696251100.030491-CDS-E-siliculosus-1a_M_contig93:545618..545830 | 1696251100.030491-CDS-E-siliculosus-1a_M_contig93:545618..545830 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 545619..545830 + |
1622936486.1253273-CDS-E-siliculosus-1a_M_contig93:546235..546324 | 1622936486.1253273-CDS-E-siliculosus-1a_M_contig93:546235..546324 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 546236..546324 + |
1696251100.0479167-CDS-E-siliculosus-1a_M_contig93:546235..546324 | 1696251100.0479167-CDS-E-siliculosus-1a_M_contig93:546235..546324 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 546236..546324 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17378.1 >prot_E-siliculosus-1a_M_contig93.17378.1 ID=prot_E-siliculosus-1a_M_contig93.17378.1|Name=mRNA_E-siliculosus-1a_M_contig93.17378.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=227bp
MCADRCVSPCSRSNSLRMTNKQSYEMIQAGVGAAALERGEEGSLIAGTEP RRKGWVAPALAAAVGVALLLVCGLSAHAREDASAAGAAPMQASTDSVPSC SLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWTGGDGCTSFCDLSGC ADTLENTGVDDLPRRCLECDETQCSTLAGHPSQACGSTVPFMCLSGAATW GCANNELAWASTPSTTCGECCDVRGC* back to topmRNA from alignment at E-siliculosus-1a_M_contig93:543951..547158+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig93.17378.1 ID=mRNA_E-siliculosus-1a_M_contig93.17378.1|Name=mRNA_E-siliculosus-1a_M_contig93.17378.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3208bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:543951..547158+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) CCACGCCTGTCGCGATCTTTACTACTTCTCGTATACGACACACCGGCGGC
AGGTGAGACACGGCAGCAGGCACGGGCAAATGGTCTAGCAGCCCTTGCCG
TTGACATGCTGTACTTTGCAGCGAGATCTCCATCGCTGCCCCTCTCGATC
GGTTGTTGAATGTGCGCCGATCGCTGTGTGTCTCCTTGCAGCAGGTCAAA
CTCGCTCAGAATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTG
TCGGGGCAGCAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGC
ACTGAGCCGCGGCGCAAAGGATGGGTGGCACCGGCGTTGGCGGCGGCGGT
TGGTGTCGCTCTGCTGCTGGTCTGTGGATTGTCTGCTCATGCTCGGGAGG
ACGCTTCCGGTGTGTGTCTGTTGGGAAACAACATGTGCTGATATGCATAC
AGCCGTAGATTTACCACTTCCCGAGCACAATGCACAACAAAACAATGCAA
CACAGCAGCAATACGTAGCTAGTTATTGCCGGGTAAACGTGCTAAACACA
CATGTGAGCCCGATGTAACTGCTAGCTGCACTTGTAGTGGGTTCGGAGAT
GGGAACTTCAACACGAGGTTGGCGGAATCAAACGGCAGCCAGCGCGTGAT
ATACCGCACAATACAAGCAGCGTGCTTGCGGACCCGCCAAGCTGCGATTT
CTAGGGTCGTAGATACCGACCGACGTGAAAGTTTTGGAGTGATAATGAAT
CACAACGCGGAATCCACGTCTGCCATGAGCTATGATTGCAGAAAAACCAT
TCGCTAATCCTGAGGTTTGCACATCCCGGACCAACTTTGTTCTCGTCAAG
CGACCCAGCCAAAACCGTCGCTCACAGGCGTGCGAGCGGCGGTCGAACAA
CTTGATTGTGTTTCTGTTGCTTGCCTGCCCCCCAACAGGTTTGTTCTCAT
CCCATATGTCCAGTCTGTTTCGTTCCCACACACGCGGAGGGTTTGCCATG
ACAGAGGCGTTTGCACCTTTGAAAAAAATACTCTTCCAACCGCACCGCCT
CCTCTGTCCGGCAACGACCCCTTCCCGCAGCTGCCGGCGCTGCCCCCATG
CAGGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTGTCCTGCACGAG
CTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGGACGGGGGCT
CCGCTGGAGGGTGGGCGCCTTGTACAGTTGTTGCTAAATTCGTCGACGTC
GTTGTTGACGCTCTGTTATTGTGGCGACTCTTAAGGTCTGACCGAATGTT
GAACCGTAGCTCAACTCTATCAGACCGTAAAACCTACTGTCGGTGTTTTA
GATCTGTGTCAAGGTGATGAGTGTACGCTCCCGCCCCGTCCGCCGGAATT
CGGTACATAAGTCGTCGGTATTGGCGTGCGCGCGTGCCTCACGCGTTTGA
GTCTTCTCGGCGCATTAATCCTACTGCAGGGTGTACGTGTACAGCAACAA
GATTGAATGACTGTGAAACAACTAGAAACAACCACACATACCGACCTCAC
ATCGCGTAAGAGACATCGTTAAAAACTCAAGACGAGATTCCTCTTTCGTT
TCCCGGCGAGCGCTACACCACCACCATATCTCATGCTACCTCTCTTCCGC
GCGCCCCCTCCTCAACAGGTGTGCAGACAGCGCCTCTACGTGGACCGGAG
GCGACGGCTGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATACCCTT
GAGAACACCGGCGTGGACGACCTGCCGCGGCGCTGCCTGGAGTGCGACGA
AACACAGTGCTCCACCCTGGCCGGGCACCCGTCGCAGGCGTGCGGCAGCA
CGGTGCCGTTCATGTGTCTCTCCGGCGCAGGTATGTCTCGTGTGTCGTGT
CGATGGCACGATGGCTGGTATTTCTTTGCTACGAGCGTGGATGCAGTACA
TGGGGGGGGGGGTGCTCAACAAGGCCGGTGTGTGCCCGGCGAATCGCCGG
CGCTACAATATCAGATCAGAGGCGCTTTTTCAAACTACAGGATGACTTGA
TGATTCAGCCTGTATCGAGCGAATTATCCGGCGCTGTTCAGGGCCACCGG
CGCTATACCACGGACGCTGTTGAGGCCCGTCCACTGCAGTCGTGGGTGGT
GCTTGGATTCTTGTCGAACACTGCCTGTGTCCGCCGCTCTTCTTTCACGA
TGGTGAAACTTAAGCTTTGGTGTTTCCTTCGCGTCGTCGCTTATGCCTTT
TGTTGGTCCTCGGTTTTGCCTACGTGCTTGTGCAGCCACCTGGGGCTGCG
CGAACAACGAGCTGGCGTGGGCAAGCACACCTTCGACAACGTGTGGCGAG
TGCTGCGATGTCAGGGGCTGCTAAATTACTTGCAAGGGGCGCATGGTGGA
AGGGGTCGCGGATTGGCTTCGCTTGAAACGGAGGGCGCCCCATTCGCCCG
TGGCTACTGTAGGTTTAGAGATACAGTAGTTTGTTTGGTAAGTACGGGGG
GCTCATAGGTGCTGGCAGAGATGGCTATCCGTAAGGGTTTTATCGTTTCT
TGTCGGCGGTCAATTTTGTCTTGACGCTCCAGCATTTCTATTATCATGGT
GGGCAGAAGTCAGAAGTAGTGGGTAGGTTGGGCACCGATTACACCCTGGG
GGGGGGAGGAGGTTGCACCCCGAAGTGGGCAAGTAGTCCCGCATCTCGGT
GAGTGGCGTTATTCCAATCGACACGGTGGGCGAGCAGCATAGACAAAAAA
ATGGCTCAAAGTCGATCCCGGCTTCCCATCCTCCTCACCCAACCCTTGGG
AGGTCGTGATCGGTGCACAACCTACACCTCTGATCACCAGCGTAGAGGTG
GATTTTGGTCGCAGAGTGGTCGGGACGTGGGAAAGTAGGCGAGATACTCA
AAGGAATCTTGTACTCGTAGCGACGTGTCCTGGCCGCAATCCGTCGGCAA
CTGCAACCTTGAGCACGGTAGGGCAAGGAGTAAATGGTCTACGACACTCA
TTCTCGAGGTGGGGAAATTTCAGCGTGCGACGCAGGCGCAAGCTCGGACT
TCACCCCGGTACACCAACACGAATGAGCCGTTCAAGTCATCATGCTACAA
ATTCGTGTACATAGACGGGCGATGTTTCCGCGGACCTCTTATCCGGTGAA
ATGTTGCTAGGCCATGCATGAATCTCATTCAAGCATGCCACGGGTCGCGC
CTTATCCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:543951..547158+ >mRNA_E-siliculosus-1a_M_contig93.17378.1 ID=mRNA_E-siliculosus-1a_M_contig93.17378.1|Name=mRNA_E-siliculosus-1a_M_contig93.17378.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1362bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:543951..547158+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGTGCGCCGATCGCTGTGTGTCTCCTTGCAGCAGGTCAAACTCGCTCAG AATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTGTCGGGGCAG CAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGCACTGAGCCG CGGCGCAAAGGATGGGTGGCACCGGCGTTGGCGGCGGCGGTTGGTGTCGC TCTGCTGCTGGTCTGTGGATTGTCTGCTCATGCTCGGGAGGACGCTTCCG ATGTGCGCCGATCGCTGTGTGTCTCCTTGCAGCAGGTCAAACTCGCTCAG AATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTGTCGGGGCAG CAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGCACTGAGCCG CGGCGCAAAGGATGGGTGGCACCGGCGTTGGCGGCGGCGGTTGGTGTCGC TCTGCTGCTGGTCTGTGGATTGTCTGCTCATGCTCGGGAGGACGCTTCCG CTGCCGGCGCTGCCCCCATGCAGGCCTCCACGGACAGCGTCCCTTCCTGC AGCCTCCTGTCCTGCACGAGCTCGGGCTGCGACTGGGACGGGGCCCCTTT CCTCTGCCTGGACGGGGGCTCCGCTGGAGGCTGCCGGCGCTGCCCCCATG CAGGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTGTCCTGCACGAG CTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGGACGGGGGCT CCGCTGGAGGGTGTGCAGACAGCGCCTCTACGTGGACCGGAGGCGACGGC TGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATACCCTTGAGAACAC CGGCGTGGACGACCTGCCGCGGCGCTGCCTGGAGTGCGACGAAACACAGT GCTCCACCCTGGCCGGGCACCCGTCGCAGGCGTGCGGCAGCACGGTGCCG TTCATGTGTCTCTCCGGCGCAGGTGTGCAGACAGCGCCTCTACGTGGACC GGAGGCGACGGCTGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATAC CCTTGAGAACACCGGCGTGGACGACCTGCCGCGGCGCTGCCTGGAGTGCG ACGAAACACAGTGCTCCACCCTGGCCGGGCACCCGTCGCAGGCGTGCGGC AGCACGGTGCCGTTCATGTGTCTCTCCGGCGCAGCCACCTGGGGCTGCGC GAACAACGAGCTGGCGTGGGCAAGCACACCTTCGACAACGTGTGGCGAGT GCTGCGATGTCAGGGGCTGCTAACCACCTGGGGCTGCGCGAACAACGAGC TGGCGTGGGCAAGCACACCTTCGACAACGTGTGGCGAGTGCTGCGATGTC AGGGGCTGCTAA back to top
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