mRNA_E-siliculosus-1a_M_contig93.17372.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17372.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17372.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17372.1 vs. uniprot
Match: D8LSS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS6_ECTSI)

HSP 1 Score: 652 bits (1681), Expect = 1.950e-231
Identity = 389/410 (94.88%), Postives = 394/410 (96.10%), Query Frame = 3 
Query:   75 MTKRKGKHLAREEPAVRQPLSQLLQSYRHTAALTESALVVLVESGLLGPSWAEVVELQRASLFFCEVCRSCTPVRVRVDAQTPRAMWARSSRPDDGGGRDNRGGGDSSENDGSKIRAKGRKNWSSWRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLPRLSITCLVWAAPAKNLGDGSDLPSALRELIFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRGHRKGKRRENDPEIVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTPSPSTAPPGENREETKSFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 1304
            MTKRKGKHLAREEPAVRQPLSQLL  Y HTAALTE+ALVVLVESGLLGPSWAEVVELQRASLFFCE+CRSCTPVRVRVDAQTPRAMWAR+SRP DGGGRDNRGGGDSSENDGSK+RAKGRK WS WRRQ  XXXXXXXXXXXXXXXXXXXXXXXXXX  SRLPRLSIT LVWAAPAKNLGDGSDLP ALREL FDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRGHR+GKRRENDPE VPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLT SPSTAPPGENREETK FAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE
Sbjct:    1 MTKRKGKHLAREEPAVRQPLSQLL-FYGHTAALTENALVVLVESGLLGPSWAEVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXXXXX--SRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTSSPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 407
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS6_ECTSI1.950e-23194.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:504271..506932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1233
Model size1631
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17372.1prot_E-siliculosus-1a_M_contig93.17372.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 504345..506608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936484.92109-UTR-E-siliculosus-1a_M_contig93:504270..5043441622936484.92109-UTR-E-siliculosus-1a_M_contig93:504270..504344Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 504271..504344 +
1696251099.5644088-UTR-E-siliculosus-1a_M_contig93:504270..5043441696251099.5644088-UTR-E-siliculosus-1a_M_contig93:504270..504344Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 504271..504344 +
1622936485.0240002-UTR-E-siliculosus-1a_M_contig93:506608..5069321622936485.0240002-UTR-E-siliculosus-1a_M_contig93:506608..506932Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 506609..506932 +
1696251099.6110382-UTR-E-siliculosus-1a_M_contig93:506608..5069321696251099.6110382-UTR-E-siliculosus-1a_M_contig93:506608..506932Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 506609..506932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936484.9610677-CDS-E-siliculosus-1a_M_contig93:504344..5044381622936484.9610677-CDS-E-siliculosus-1a_M_contig93:504344..504438Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 504345..504438 +
1696251099.5746398-CDS-E-siliculosus-1a_M_contig93:504344..5044381696251099.5746398-CDS-E-siliculosus-1a_M_contig93:504344..504438Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 504345..504438 +
1622936484.9777856-CDS-E-siliculosus-1a_M_contig93:505023..5059101622936484.9777856-CDS-E-siliculosus-1a_M_contig93:505023..505910Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 505024..505910 +
1696251099.5864384-CDS-E-siliculosus-1a_M_contig93:505023..5059101696251099.5864384-CDS-E-siliculosus-1a_M_contig93:505023..505910Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 505024..505910 +
1622936485.0057476-CDS-E-siliculosus-1a_M_contig93:506356..5066081622936485.0057476-CDS-E-siliculosus-1a_M_contig93:506356..506608Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 506357..506608 +
1696251099.6008043-CDS-E-siliculosus-1a_M_contig93:506356..5066081696251099.6008043-CDS-E-siliculosus-1a_M_contig93:506356..506608Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 506357..506608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17372.1

>prot_E-siliculosus-1a_M_contig93.17372.1 ID=prot_E-siliculosus-1a_M_contig93.17372.1|Name=mRNA_E-siliculosus-1a_M_contig93.17372.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=411bp
MTKRKGKHLAREEPAVRQPLSQLLQSYRHTAALTESALVVLVESGLLGPS
WAEVVELQRASLFFCEVCRSCTPVRVRVDAQTPRAMWARSSRPDDGGGRD
NRGGGDSSENDGSKIRAKGRKNWSSWRRQKQQKAGGAKRNAGDFSSGGGG
GGGGAAAAASRLPRLSITCLVWAAPAKNLGDGSDLPSALRELIFDRGFNR
RLVGLAWPPNLRKLTFGSSFNRELACQRRESRSGPGQPAGSTPPPPIAAG
GSCRGDRGHRKGKRRENDPEIVPLLPASLEELTLGKHFNKPLPPRGLLPP
GLVSLTLGRNFRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMR
GLTPSPSTAPPGENREETKSFAWPGGLDRVEFWREGRVVVRLLGGTTLDK
DSLEWLVNNE*
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mRNA from alignment at E-siliculosus-1a_M_contig93:504271..506932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17372.1 ID=mRNA_E-siliculosus-1a_M_contig93.17372.1|Name=mRNA_E-siliculosus-1a_M_contig93.17372.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:504271..506932+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCACCCGGCACGTTGTGTGGTGTCGTTGTTGACTCGGACACAGCCGAAT
TCATATACGAGGTTGTAGCACATCATGACGAAACGCAAGGGAAAGCATCT
GGCCAGAGAGGAACCCGCAGTACGACAGCCTCTCTCGCAACTGCTACAAT
CCTACCGTCACACCGCAGGTATGCAACCGTTCCCTCGCTCATGATTGCCT
CCGCAACGCTGCTGGTCTTGGCTGTGCACGCCACTGCAGGCTGCAATCTC
GCGATCAGTACTATAACACCAGGGTTTTTGCTGCGTATGAGATCCCACCC
ACTATAAAAGCAGGGGTTTCGAGTACAATGCCTGCAGGACCTGCGCCTGA
AGAAAGCTACGTCTGTTGTAGTGTAGACTAGATCCCCGTGCCCCCTGCTC
TTCTGTACCTACCGGTAGGTTGGTGTGCCACCGGAACGCTCTGCTTGCCT
AAATGCGTGCGTGTGTCAGTGGCCATTAATACCCAGAGGCGCGCATTTGA
CCCCGTTTCCCCAATTGCGAGCGATTCACCGCGCTGGCCCTACGCCTCCA
CTAATGTTTTTGTTCCTTTTTTTTCTTCGTGAGCATGAAAACACGATCTC
ACACGTAGCTATCGCCTGACTGTGCCAAAGAATGAGCTCTTGGGGAAGGT
CCGTTAGTGCCCCCCCTCTACAGCAGTGTACACACGCGGCACTCCCAATG
ATCGCATCATGCGGCAACCCCATGCGCCTGTCAAAACGAACTCGAAACAA
CAGCACTGACGGAGAGCGCGCTCGTGGTCCTGGTTGAGTCTGGCCTCCTG
GGCCCCTCCTGGGCCGAAGTGGTAGAGCTCCAGCGCGCCTCCCTCTTCTT
CTGCGAAGTGTGCCGAAGCTGCACCCCGGTGCGCGTGCGAGTCGACGCCC
AGACGCCAAGGGCCATGTGGGCCCGATCGAGCAGACCCGATGACGGCGGT
GGCCGGGACAACCGTGGCGGGGGAGACAGCAGCGAAAACGACGGGAGTAA
AATTAGGGCCAAAGGGAGAAAAAACTGGAGCTCGTGGCGGCGGCAGAAGC
AACAGAAGGCGGGCGGGGCCAAGAGGAACGCCGGCGATTTCAGCAGCGGC
GGCGGTGGTGGTGGTGGTGGTGCTGCTGCCGCTGCGTCGCGACTCCCACG
CCTAAGCATAACATGCCTCGTGTGGGCGGCGCCGGCGAAAAACCTGGGCG
ACGGCAGCGACCTTCCCTCGGCGTTGAGAGAGCTGATCTTCGACCGAGGG
TTCAACCGGCGCCTGGTTGGACTCGCGTGGCCGCCAAACCTCCGAAAGCT
GACCTTCGGCTCAAGCTTCAATCGAGAGCTAGCCTGCCAGAGGAGGGAGA
GTCGATCAGGGCCCGGACAGCCAGCGGGGTCCACACCGCCTCCACCGATT
GCCGCTGGCGGCAGCTGCAGAGGTGATCGTGGTCACCGTAAGGGGAAGAG
GAGGGAGAACGATCCGGAGATCGTTCCTCTCCTTCCGGCAAGCCTCGAGG
AGCTGACGCTCGGGAAGCACTTCAACAAGCCGCTACCACCGCGGGGGCTG
CTGCCTCCCGGGCTTGTGTCCCTGACGCTGGGGAGGAACTTTCGTCAACA
CCGCAGCGTGCGCCACGCGGTGTGGCCCCGGACCCTCAAGGTGTGTGTGT
GTGTGTGTGTTCTTGAGTTAGCATGAACGGCGCTGATCAATGATAATGCA
TCAGTACTTTAGCGGGATAACCGGCTGACCAATGAAAGGATGCCAGTCTC
AGTGCGGCTGAAAACAGAAAATGCTTCCAAAGGTCATGATGTATGTGTGT
GTGAGAGTTTCTCGAGTTAGAATCAACCGCGCTAACCCGGTGACCAATAA
TTTTTCGACAGTCTCAGTGCGGCTGAAAGCAGAAAATGTTTCGACCGCTC
ACCGACTCACCAATGAAAACAGTCTGTCTCATTGCGGGACAAGAAACTAC
TATGCGCGTGTCCTTATTGCAACTTGCTTCCCTTTCGTTTCTCAACTTTC
CTGTTTGTTGTTTTTGCTTTCTTTCCGCGTGCCTCGCTCTCCCACCTCTC
CTTATCTGGGCATCCGCCCACGCTTGCAACGACAAGGTCGTTAGGTTCGG
GGAGGGCATGCTCGAGGAGCAGCGGAAGAACTGGCCGCGGCTCGAGGCAA
TGCGGGGGCTGACGCCATCGCCCTCCACCGCCCCCCCCGGGGAGAACAGG
GAGGAGACCAAGAGCTTTGCGTGGCCGGGTGGGTTGGATAGGGTGGAGTT
CTGGCGGGAGGGGAGGGTGGTGGTTCGACTCCTCGGCGGGACCACGCTCG
ACAAGGATTCGCTGGAATGGCTTGTGAACAACGAATGACGATAAGGATTC
CCTCTTGAATGGTTTGTGAGCAACGAATGGCCTGCGCTGAGTCCATCAGG
CTACAAAAGTCTTTTGTCACCAATGCATCGTACTTTTTTGGGTGTCGTGA
CGTGGAACGCACCGGGCGGCGGATGGACAGAGGGCATGTGGCGGTTCTTC
TTGTTTAGCACTTGCGAACATCTTTTTTCTGTTTTTATTCTTGGTAGTTT
TTCTGAGGTGTGCACTGCTAGTGGGACCGCTGAAAACCATTGCTTGTCGC
CATGTTCAGGGTGCATATTGTAGGAATATCAAGTGTGGAGGTGAGTGGTA
GATGGAGGTGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:504271..506932+

>mRNA_E-siliculosus-1a_M_contig93.17372.1 ID=mRNA_E-siliculosus-1a_M_contig93.17372.1|Name=mRNA_E-siliculosus-1a_M_contig93.17372.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2466bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:504271..506932+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACGAAACGCAAGGGAAAGCATCTGGCCAGAGAGGAACCCGCAGTACG
ACAGCCTCTCTCGCAACTGCTACAATCCTACCGTCACACCGCAGATGACG
AAACGCAAGGGAAAGCATCTGGCCAGAGAGGAACCCGCAGTACGACAGCC
TCTCTCGCAACTGCTACAATCCTACCGTCACACCGCAGCACTGACGGAGA
GCGCGCTCGTGGTCCTGGTTGAGTCTGGCCTCCTGGGCCCCTCCTGGGCC
GAAGTGGTAGAGCTCCAGCGCGCCTCCCTCTTCTTCTGCGAAGTGTGCCG
AAGCTGCACCCCGGTGCGCGTGCGAGTCGACGCCCAGACGCCAAGGGCCA
TGTGGGCCCGATCGAGCAGACCCGATGACGGCGGTGGCCGGGACAACCGT
GGCGGGGGAGACAGCAGCGAAAACGACGGGAGTAAAATTAGGGCCAAAGG
GAGAAAAAACTGGAGCTCGTGGCGGCGGCAGAAGCAACAGAAGGCGGGCG
GGGCCAAGAGGAACGCCGGCGATTTCAGCAGCGGCGGCGGTGGTGGTGGT
GGTGGTGCTGCTGCCGCTGCGTCGCGACTCCCACGCCTAAGCATAACATG
CCTCGTGTGGGCGGCGCCGGCGAAAAACCTGGGCGACGGCAGCGACCTTC
CCTCGGCGTTGAGAGAGCTGATCTTCGACCGAGGGTTCAACCGGCGCCTG
GTTGGACTCGCGTGGCCGCCAAACCTCCGAAAGCTGACCTTCGGCTCAAG
CTTCAATCGAGAGCTAGCCTGCCAGAGGAGGGAGAGTCGATCAGGGCCCG
GACAGCCAGCGGGGTCCACACCGCCTCCACCGATTGCCGCTGGCGGCAGC
TGCAGAGGTGATCGTGGTCACCGTAAGGGGAAGAGGAGGGAGAACGATCC
GGAGATCGTTCCTCTCCTTCCGGCAAGCCTCGAGGAGCTGACGCTCGGGA
AGCACTTCAACAAGCCGCTACCACCGCGGGGGCTGCTGCCTCCCGGGCTT
GTGTCCCTGACGCTGGGGAGGAACTTTCGTCAACACCGCAGCGTGCGCCA
CGCGGTGTGGCCCCGGACCCTCAAGCACTGACGGAGAGCGCGCTCGTGGT
CCTGGTTGAGTCTGGCCTCCTGGGCCCCTCCTGGGCCGAAGTGGTAGAGC
TCCAGCGCGCCTCCCTCTTCTTCTGCGAAGTGTGCCGAAGCTGCACCCCG
GTGCGCGTGCGAGTCGACGCCCAGACGCCAAGGGCCATGTGGGCCCGATC
GAGCAGACCCGATGACGGCGGTGGCCGGGACAACCGTGGCGGGGGAGACA
GCAGCGAAAACGACGGGAGTAAAATTAGGGCCAAAGGGAGAAAAAACTGG
AGCTCGTGGCGGCGGCAGAAGCAACAGAAGGCGGGCGGGGCCAAGAGGAA
CGCCGGCGATTTCAGCAGCGGCGGCGGTGGTGGTGGTGGTGGTGCTGCTG
CCGCTGCGTCGCGACTCCCACGCCTAAGCATAACATGCCTCGTGTGGGCG
GCGCCGGCGAAAAACCTGGGCGACGGCAGCGACCTTCCCTCGGCGTTGAG
AGAGCTGATCTTCGACCGAGGGTTCAACCGGCGCCTGGTTGGACTCGCGT
GGCCGCCAAACCTCCGAAAGCTGACCTTCGGCTCAAGCTTCAATCGAGAG
CTAGCCTGCCAGAGGAGGGAGAGTCGATCAGGGCCCGGACAGCCAGCGGG
GTCCACACCGCCTCCACCGATTGCCGCTGGCGGCAGCTGCAGAGGTGATC
GTGGTCACCGTAAGGGGAAGAGGAGGGAGAACGATCCGGAGATCGTTCCT
CTCCTTCCGGCAAGCCTCGAGGAGCTGACGCTCGGGAAGCACTTCAACAA
GCCGCTACCACCGCGGGGGCTGCTGCCTCCCGGGCTTGTGTCCCTGACGC
TGGGGAGGAACTTTCGTCAACACCGCAGCGTGCGCCACGCGGTGTGGCCC
CGGACCCTCAAGGTCGTTAGGTTCGGGGAGGGCATGCTCGAGGAGCAGCG
GAAGAACTGGCCGCGGCTCGAGGCAATGCGGGGGCTGACGCCATCGCCCT
CCACCGCCCCCCCCGGGGAGAACAGGGAGGAGACCAAGAGCTTTGCGTGG
CCGGGTGGGTTGGATAGGGTGGAGTTCTGGCGGGAGGGGAGGGTGGTGGT
TCGACTCCTCGGCGGGACCACGCTCGACAAGGATTCGCTGGAATGGCTTG
TGAACAACGAATGAGTCGTTAGGTTCGGGGAGGGCATGCTCGAGGAGCAG
CGGAAGAACTGGCCGCGGCTCGAGGCAATGCGGGGGCTGACGCCATCGCC
CTCCACCGCCCCCCCCGGGGAGAACAGGGAGGAGACCAAGAGCTTTGCGT
GGCCGGGTGGGTTGGATAGGGTGGAGTTCTGGCGGGAGGGGAGGGTGGTG
GTTCGACTCCTCGGCGGGACCACGCTCGACAAGGATTCGCTGGAATGGCT
TGTGAACAACGAATGA
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