mRNA_E-siliculosus-1a_M_contig93.17368.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17368.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17368.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:464458..464816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size359
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17368.1prot_E-siliculosus-1a_M_contig93.17368.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 464484..464786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.7595031-UTR-E-siliculosus-1a_M_contig93:464457..4644831622936471.7595031-UTR-E-siliculosus-1a_M_contig93:464457..464483Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 464458..464483 +
1696251094.1085827-UTR-E-siliculosus-1a_M_contig93:464457..4644831696251094.1085827-UTR-E-siliculosus-1a_M_contig93:464457..464483Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 464458..464483 +
1622936471.7980816-UTR-E-siliculosus-1a_M_contig93:464786..4648161622936471.7980816-UTR-E-siliculosus-1a_M_contig93:464786..464816Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 464787..464816 +
1696251094.130325-UTR-E-siliculosus-1a_M_contig93:464786..4648161696251094.130325-UTR-E-siliculosus-1a_M_contig93:464786..464816Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 464787..464816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.7803855-CDS-E-siliculosus-1a_M_contig93:464483..4647861622936471.7803855-CDS-E-siliculosus-1a_M_contig93:464483..464786Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 464484..464786 +
1696251094.119352-CDS-E-siliculosus-1a_M_contig93:464483..4647861696251094.119352-CDS-E-siliculosus-1a_M_contig93:464483..464786Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 464484..464786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17368.1

>prot_E-siliculosus-1a_M_contig93.17368.1 ID=prot_E-siliculosus-1a_M_contig93.17368.1|Name=mRNA_E-siliculosus-1a_M_contig93.17368.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=101bp
MTLYEVTLAPYFDTIAGNIYSSQRHQLPAAAGTQKNISPLAKCHGGVVAW
LMLHRLDVSAPYLGPKKASCKCLPPPRPLPPNQELLTDVKPTWRLFAWTC
*
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mRNA from alignment at E-siliculosus-1a_M_contig93:464458..464816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17368.1 ID=mRNA_E-siliculosus-1a_M_contig93.17368.1|Name=mRNA_E-siliculosus-1a_M_contig93.17368.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=359bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:464458..464816+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGGAAAATTGTCCAGTGGTCGTCTGAATGACATTATATGAAGTGACACTC
GCCCCATATTTTGACACAATCGCCGGCAACATCTATTCGTCACAAAGACA
TCAGCTGCCGGCAGCAGCAGGTACACAAAAAAACATCTCCCCTCTTGCCA
AGTGCCACGGTGGCGTTGTTGCCTGGTTGATGCTGCATCGTTTGGATGTT
AGTGCGCCATATTTGGGGCCGAAGAAAGCTAGCTGCAAATGCCTGCCCCC
TCCCCGACCTCTCCCCCCCAACCAAGAGTTGCTAACGGACGTAAAACCGA
CGTGGAGATTGTTTGCTTGGACTTGTTAGCGTTCGCGGTCTATGTGCTCG
TCAACGCCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:464458..464816+

>mRNA_E-siliculosus-1a_M_contig93.17368.1 ID=mRNA_E-siliculosus-1a_M_contig93.17368.1|Name=mRNA_E-siliculosus-1a_M_contig93.17368.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:464458..464816+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACATTATATGAAGTGACACTCGCCCCATATTTTGACACAATCGCCGG
CAACATCTATTCGTCACAAAGACATCAGCTGCCGGCAGCAGCAGGTACAC
AAAAAAACATCTCCCCTCTTGCCAAGTGCCACGGTGGCGTTGTTGCCTGG
TTGATGCTGCATCGTTTGGATGTTAGTGCGCCATATTTGGGGCCGAAGAA
AGCTAGCTGCAAATGCCTGCCCCCTCCCCGACCTCTCCCCCCCAACCAAG
AGTTGCTAACGGACGTAAAACCGACGTGGAGATTGTTTGCTTGGACTTGT
TAGATGACATTATATGAAGTGACACTCGCCCCATATTTTGACACAATCGC
CGGCAACATCTATTCGTCACAAAGACATCAGCTGCCGGCAGCAGCAGGTA
CACAAAAAAACATCTCCCCTCTTGCCAAGTGCCACGGTGGCGTTGTTGCC
TGGTTGATGCTGCATCGTTTGGATGTTAGTGCGCCATATTTGGGGCCGAA
GAAAGCTAGCTGCAAATGCCTGCCCCCTCCCCGACCTCTCCCCCCCAACC
AAGAGTTGCTAACGGACGTAAAACCGACGTGGAGATTGTTTGCTTGGACT
TGTTAG
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