mRNA_E-siliculosus-1a_M_contig93.17367.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A6H5L128_9PHAE (COX assembly mitochondrial protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L128_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.840e-54 Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRRKELDQEQQQAGR 400
MHPPLLRPHPSCHEEVK+LMACHEENPYGKFFGACNDLK+ALDSCFV EKEEKRRKN+AKARRFDAGFQKELELRRKEL+QEQQQAGR
Sbjct: 1 MHPPLLRPHPSCHEEVKMLMACHEENPYGKFFGACNDLKLALDSCFVLEKEEKRRKNLAKARRFDAGFQKELELRRKELEQEQQQAGR 88
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: F0Y773_AURAN (COX assembly mitochondrial protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y773_AURAN) HSP 1 Score: 97.8 bits (242), Expect = 3.740e-24 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELR 361
MHPPL RPHP C V +L+ CH+ENPYGKF+GACND K A+D CF EKEEKRR N K R F+ ++K+ + R
Sbjct: 1 MHPPLYRPHPKCAALVDLLVKCHDENPYGKFWGACNDEKAAMDWCFKEEKEEKRRANFEKTRSFNEEWRKKQDAR 75
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A8J2WQW2_9STRA (COX assembly mitochondrial protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQW2_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.290e-23 Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDA 334
MHPPL RPHP C V L+ CH+ N YGKF+GACND K A+D+CF EK+EKRR+N+ KAR FDA
Sbjct: 1 MHPPLYRPHPKCAALVDALVECHDANVYGKFWGACNDQKAAMDACFKAEKDEKRRENLRKARAFDA 66
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A3M6VJT8_9STRA (COX assembly mitochondrial protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJT8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.190e-23 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRR 364
MH PL RPHP C E+K L+ CH+ NPY KFFGAC+D+K ALD CF HEKE R +N+ +A+ DA +++++ RR
Sbjct: 1 MHTPLDRPHPDCQSEIKALLQCHDNNPYAKFFGACSDVKTALDWCFKHEKERIRAENLKRAKASDAFVKQKMQERR 76
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: K3WST6_GLOUD (COX assembly mitochondrial protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST6_GLOUD) HSP 1 Score: 92.0 bits (227), Expect = 8.730e-22 Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRRKELDQEQQQA 394
MH PL RPHP C E + L CHEENP KFFGACN+ K+ALD CF EKE KR +N+ +AR DA +++++ RR+ Q Q A
Sbjct: 1 MHAPLDRPHPDCQEVIMALNLCHEENPRMKFFGACNEAKVALDKCFKKEKERKRDENLRRARASDAYVRQKMKERREREAQAAQDA 86
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: G4ZUD5_PHYSP (COX assembly mitochondrial protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZUD5_PHYSP) HSP 1 Score: 91.3 bits (225), Expect = 2.380e-21 Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRRKELDQEQ 385
MH PL RPHP C E+K L+ CHEENPY KFFGAC D+K ALD CF EK R +N +A+ DA +++++ RR + EQ
Sbjct: 1 MHTPLDRPHPDCQAEIKALLECHEENPYAKFFGACGDVKTALDWCFREEKVRIRSENFQRAKASDAYVRQKMQERRDRVAAEQ 83
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A6A3SY18_9STRA (COX assembly mitochondrial protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SY18_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.250e-20 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRRKELDQEQ 385
MH PL RPHP C E+K L+ CH+ENPY KFFGAC ++K ALD CF EK R +N A+ DA +++++ RR + +EQ
Sbjct: 1 MHTPLDRPHPDCQAEIKALLECHDENPYAKFFGACGEVKTALDWCFRQEKTRIRSENFKHAKASDAFVRQKMQERRDRMAEEQ 83
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A225VCF9_9STRA (COX assembly mitochondrial protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VCF9_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.460e-20 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRRKELDQEQQQA 394
MH PL RPHP C E+K L+ CH+ENPY KFFGAC ++K ALD CF EK R +N A+ DA +++++ RR + E+ +A
Sbjct: 1 MHTPLDRPHPDCQTEIKALLECHDENPYAKFFGACGEIKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERRDRVANEKAKA 86
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A0P1AB85_PLAHL (COX assembly mitochondrial protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB85_PLAHL) HSP 1 Score: 88.6 bits (218), Expect = 1.950e-20 Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRR 364
MH PL RPHP C E+K L+ CH +NPY KFFGACND+K ALD CF EK R +N+ A+ DA +++++ RR
Sbjct: 1 MHAPLDRPHPDCQIEIKALLDCHNDNPYAKFFGACNDVKSALDQCFKKEKIRIRSENLRHAKASDAYVRRKMQERR 76
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Match: A0A2P4XXV8_9STRA (COX assembly mitochondrial protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XXV8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.450e-20 Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 2 Query: 137 MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKEEKRRKNMAKARRFDAGFQKELELRR 364
MH PL RPHP C E+K L+ CHE NPY KFFGAC D+K ALD CF EK R +N A+ DA +++++ RR
Sbjct: 1 MHTPLDRPHPDCQTEIKALLECHESNPYAKFFGACGDVKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERR 76 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17367.1 >prot_E-siliculosus-1a_M_contig93.17367.1 ID=prot_E-siliculosus-1a_M_contig93.17367.1|Name=mRNA_E-siliculosus-1a_M_contig93.17367.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=89bp MHPPLLRPHPSCHEEVKVLMACHEENPYGKFFGACNDLKIALDSCFVHEKback to top mRNA from alignment at E-siliculosus-1a_M_contig93:461611..463847- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17367.1 ID=mRNA_E-siliculosus-1a_M_contig93.17367.1|Name=mRNA_E-siliculosus-1a_M_contig93.17367.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2237bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:461611..463847- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:461611..463847- >mRNA_E-siliculosus-1a_M_contig93.17367.1 ID=mRNA_E-siliculosus-1a_M_contig93.17367.1|Name=mRNA_E-siliculosus-1a_M_contig93.17367.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=534bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:461611..463847- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |