mRNA_E-siliculosus-1a_M_contig93.17365.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: D8LST2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST2_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.380e-22 Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 47 PNVYLYTGCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIAEFHGEGTKPAEAQQRIAAYGETTRELGQEIQ 280 PNVYLYTGC VQVGDD +YLDALL TVIAEFHGEGTKPAEAQ+RIAA +TTREL +E+Q Sbjct: 16 PNVYLYTGCKVQVGDDPVYLDALLXXXXXXXXXXXXXXXXXXCTVIAEFHGEGTKPAEAQERIAACRDTTRELEREMQ 93
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6H5JU89_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU89_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.230e-13 Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 2 Query: 62 YTGCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYT 178 ++GC++QVG+D LYLDALLKGYP RFVNHSC PN YL+T Sbjct: 54 FSGCLLQVGNDPLYLDALLKGYPTRFVNHSCGPNAYLHT 92
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: D8LST4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST4_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 2.080e-13 Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2 Query: 68 GCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIA 187 GCIVQVG+ LYLDALL+GYP RF+NHSC PN YLYTVIA Sbjct: 196 GCIVQVGNGPLYLDALLQGYPTRFLNHSCDPNAYLYTVIA 235
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6H5L6I1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I1_9PHAE) HSP 1 Score: 49.3 bits (116), Expect = 2.840e-5 Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 2 Query: 74 IVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIA 187 IV+ G+D +++DA KG ARF+NHSC PNVY+ + A Sbjct: 36 IVRAGEDEMFIDATRKGNLARFLNHSCDPNVYMLALTA 73
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6J1NEU8_BICAN (histone-lysine N-methyltransferase trithorax n=4 Tax=Satyrini TaxID=127320 RepID=A0A6J1NEU8_BICAN) HSP 1 Score: 50.4 bits (119), Expect = 4.410e-5 Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2 Query: 68 GCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIAEFHG 199 GC + DDHL +DA LKG ARF+NHSC PN Y + + + HG Sbjct: 4334 GCYMFRIDDHLVVDATLKGNAARFINHSCDPNCY--SRVVDIHG 4375
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE) HSP 1 Score: 49.7 bits (117), Expect = 8.150e-5 Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 2 Query: 74 IVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIA 187 +V+ G+D +++DA KG ARF+NHSC PNVY+ V A Sbjct: 1989 VVRFGEDEMFIDATRKGNLARFLNHSCDPNVYMLAVTA 2026 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17365.1 >prot_E-siliculosus-1a_M_contig93.17365.1 ID=prot_E-siliculosus-1a_M_contig93.17365.1|Name=mRNA_E-siliculosus-1a_M_contig93.17365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=48bp MRKGYPARLFNHSCNPKRVPLHGVHSTSRRRPPVPGCPAEGVPSSVC*back to top mRNA from alignment at E-siliculosus-1a_M_contig93:446245..449664+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17365.1 ID=mRNA_E-siliculosus-1a_M_contig93.17365.1|Name=mRNA_E-siliculosus-1a_M_contig93.17365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3420bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:446245..449664+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:446245..449664+ >mRNA_E-siliculosus-1a_M_contig93.17365.1 ID=mRNA_E-siliculosus-1a_M_contig93.17365.1|Name=mRNA_E-siliculosus-1a_M_contig93.17365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:446245..449664+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |