mRNA_E-siliculosus-1a_M_contig93.17361.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A6H5JPN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN3_9PHAE) HSP 1 Score: 467 bits (1202), Expect = 4.430e-154 Identity = 389/505 (77.03%), Postives = 395/505 (78.22%), Query Frame = 1
Query: 85 MSKKRERDGGGSDTFQHDN-GAESLLFEIAPPPEDRTTKRSKSIAADAPLLPQESAGSAGDGNNNEASAAEPSKCHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGDVTGGGHAAPRLTAADFKTHFGGGNPASLMSGDSESKASAGNYEGDGERGXXXXXXXXXEGRSAAAAGGATKTVGRRTSSRSTKSTKTYVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGD--VVAVEGGSSGSSKNGGXXSXXXXXXXXXXXXXXXXAFSILNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGSGEENXXXXXXXXXXXXXVAAAAVRSGPARRSSRSSAVSRVKYTQ 1590
MS+KRERDGG DTFQ D+ GAESLLFEIAPPPEDRT S AEPSK HPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPG LGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGR VHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQ+LRGEDEQA G G DDGD TGGG AA +LTAADFKTHFGGGNPASLMSGDSESKASA XXXXXXXXX GATKTVGRRTSSRSTKSTKTYVEE XXXXXXXXXXXXXXXXX DGD VVAVEGGSSGSSK+GGXXSXXXXXXXXX AFSILN+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGGSGE XXXXXXXXXXXXXVAAAAVRSGPARRSSRSSA SRVKYTQ
Sbjct: 1 MSRKRERDGGDGDTFQQDSSGAESLLFEIAPPPEDRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGVLGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRMVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQTLRGEDEQAPGSGGDDGDATGGGDAAQKLTAADFKTHFGGGNPASLMSGDSESKASAXXXXXXXXXXXXXXXXXXXX--XXXXXXGATKTVGRRTSSRSTKSTKTYVEEDSSDGELEDGGGSSXXXXXXXXXXXXXXXXXXDGDEDVVAVEGGSSGSSKDGGXXSXXXXXXXXXGVE----AFSILNSPATAKRKPVTVGSGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDD--KGGSGEXXXXXXXXXXXXXXXVAAAAVRSGPARRSSRSSAASRVKYTQ 497
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: D8LST7_ECTSI (Putative type II topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST7_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 1.560e-143 Identity = 298/363 (82.09%), Postives = 303/363 (83.47%), Query Frame = 1
Query: 187 RTTKRSK-SIAADAPLLPQESAGSAGDGNNNEASAAEPSKCHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGDVTGGGHAAPRLTAADFKTHFGGGNPASLMSGDSESKASAGNYEGDGERGXXXXXXXXXEGRSAAAAGGATKTVGRRTSSRSTKSTKTYVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGDVVAVEGGSSGSSKNGGXXSXXXXXXXXXXXXXXXXAFSILNA 1272
+TTKRSK S AADAPLLPQESAGSAGDGNNN AS AEPSK HPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNA PANPVLY+EFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQA+GGG G AAP+LTAADFKTHFGGGNPASLMSGDSESKASAGN G+G XXXXXXXXX TKTVGRRTS TYVEE XXXXXXXXXXXXXXXXXX GD DVVAVEGGSSGSSKNGGXX XXXXXXXXXXX AFSILNA
Sbjct: 24 QTTKRSKKSSAADAPLLPQESAGSAGDGNNNAASTAEPSKYHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNATPANPVLYMEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQASGGGXXXXXXXXXGDAAPKLTAADFKTHFGGGNPASLMSGDSESKASAGNDAGNGXXXXXXXXXXXXXXXXXXXXXXXTKTVGRRTSXXXXXXXXTYVEEDSDDGELEDGXXXXXXXXXXXXXXXXXXADDGDEDVVAVEGGSSGSSKNGGXXXXXXXXXXXXXXGVE--AFSILNA 384
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A453TD59_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TD59_AEGTS) HSP 1 Score: 105 bits (262), Expect = 8.190e-22 Identity = 58/153 (37.91%), Postives = 88/153 (57.52%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGDV 771
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S V FS++ WVG KE+NP E L P+ +Q+ + + G GA G+V
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGL--LAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMVLFSESWWVGTKEENPDELKLEFPKEMQNAAEDVDFKGGAGAASGEV 192
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A446Z088_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446Z088_TRITD) HSP 1 Score: 106 bits (264), Expect = 1.650e-21 Identity = 59/153 (38.56%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGDV 771
AA+ PS + + G ++V+ + + RGR L PG L G+ GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS+A WVG KE+NP E L P+ +Q+ + + G GA G+V
Sbjct: 43 AALPPSGAVVRLQGRDIVRPRGQRRGRFLFSFPGLLAPAAGA-GGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSEAWWVGTKEENPDELKLEFPKEMQNAAEDVDFKGGAGAASGEV 191
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A453TDM3_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TDM3_AEGTS) HSP 1 Score: 101 bits (252), Expect = 7.980e-21 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSL 720
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS++ WVG KE+NP E L P+ +Q++
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGL--LAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSESWWVGTKEENPDELKLEFPKEMQNV 175
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A453TDL8_AEGTS (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A453TDL8_AEGTS) HSP 1 Score: 104 bits (260), Expect = 4.890e-20 Identity = 57/153 (37.25%), Postives = 88/153 (57.52%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGDV 771
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS++ WVG KE+NP E L P+ +Q+ + + G GA G+V
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGL--LAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSESWWVGTKEENPDELKLEFPKEMQNAAEDVDFKGGAGAASGEV 192
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A811S6P0_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811S6P0_9POAL) HSP 1 Score: 104 bits (259), Expect = 4.910e-20 Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQS 717
A +APS + + G +VV+ + + R L PG L ++GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS+ACWVG KEDNP E L P+ Q+
Sbjct: 41 APLAPSGAVTRLQGRDVVRRGGQRKSRYLFSFPGL--LAPAASGGRIGELADLGTKNPVLYLEFPQGRMKLFGTHVYPKNKYLTLQMTRSAKGVV---CEDVFESLIVFSEACWVGTKEDNPEELKLEFPKEFQN 170
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: UPI001D016560 (DNA-binding protein RHL1-like isoform X1 n=4 Tax=Triticum TaxID=4564 RepID=UPI001D016560) HSP 1 Score: 104 bits (260), Expect = 5.350e-20 Identity = 57/153 (37.25%), Postives = 88/153 (57.52%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGDV 771
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS+A WVG KE+NP E L P+ +Q+ + + G GA G++
Sbjct: 42 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGL--LAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSEAWWVGTKEENPDELKLEFPKEMQNAAEDVDFKGGAGAASGEL 189
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: A0A453TD71_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TD71_AEGTS) HSP 1 Score: 102 bits (255), Expect = 5.710e-20 Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = 1
Query: 313 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGGGADDGD 768
AA+ PS + + G ++V+ + + RGR L PG L + GG++G L + NPVLY+EFP+GR+K G V+ K ++ TL ++A C DVF+S + FS++ WVG KE+NP E L P+ +Q+ + + G GA G+
Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGL--LAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRSAKGVA---CEDVFESMIVFSESWWVGTKEENPDELKLEFPKEMQNAAEDVDFKGGAGAASGE 191
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Match: UPI0009E3B71A (DNA-binding protein RHL1 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3B71A) HSP 1 Score: 102 bits (254), Expect = 1.010e-19 Identity = 68/203 (33.50%), Postives = 102/203 (50.25%), Query Frame = 1
Query: 142 GAESLLFEIAPPPEDRTTKRSKSIAADAPLLPQESAGSAGDGNNNEASAAEPSKCHPAAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESLQSLRGEDEQAAGG 750
G ++ + E+A PE KR +++A +L + A+ + P + PS + + G ++VK R + R L PG + +GGK+G L+N A NPVLY+EFP+GR+K G V+ K ++ TL K+A C DVF+S + FS A W+GKKE+NP E L P+ L + D GG
Sbjct: 2 GRKAEMVELAGDPELEEKKRLRTLAVSKKIL-----------RRSPANVSVP-------LEPSKAIVKLQGRDIVKRGQR-KSRYLFSFPGLIAP---LSGGKIGVLSNLATKNPVLYLEFPQGRMKLFGTHVYPKNKYLTLQPTKSAKGVM---CEDVFESLIVFSDAWWIGKKEENPEEYQLEYPKDLNEGKDSDYDFKGG 179 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17361.1 >prot_E-siliculosus-1a_M_contig93.17361.1 ID=prot_E-siliculosus-1a_M_contig93.17361.1|Name=mRNA_E-siliculosus-1a_M_contig93.17361.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=534bp MSKKRERDGGGSDTFQHDNGAESLLFEIAPPPEDRTTKRSKSIAADAPLLback to top mRNA from alignment at E-siliculosus-1a_M_contig93:411063..417734- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17361.1 ID=mRNA_E-siliculosus-1a_M_contig93.17361.1|Name=mRNA_E-siliculosus-1a_M_contig93.17361.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:411063..417734- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:411063..417734- >mRNA_E-siliculosus-1a_M_contig93.17361.1 ID=mRNA_E-siliculosus-1a_M_contig93.17361.1|Name=mRNA_E-siliculosus-1a_M_contig93.17361.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3204bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:411063..417734- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |