mRNA_E-siliculosus-1a_M_contig93.17356.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 184 bits (468), Expect = 3.090e-53 Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = -1 Query: 1 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 309 IGGEEHLLGKT E +AEG+K VV LL+AL+EDGVDSKDFV+FSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME Sbjct: 426 IGGEEHLLGKTSEGVAEGEKMVVTLLKALDEDGVDSKDFVLFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 528
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.030e-33 Identity = 73/103 (70.87%), Postives = 78/103 (75.73%), Query Frame = -1 Query: 1 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 309 IGGEEHLLGKTPEE+AEG+K VVKLL+ALEEDG+DS+DFVVFSVATHLAMLFNGATLRPQDFFGL TESAEESLSTVCME Sbjct: 658 IGGEEHLLGKTPEEVAEGEKSVVKLLQALEEDGIDSEDFVVFSVATHLAMLFNGATLRPQDFFGL------------------------TESAEESLSTVCME 736
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.020e-26 Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = -1 Query: 1 KRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 252 +RV+ LLEALEED VDSKDF VFS+ATH NG TL P++FFGLVG+TT +PSVGRMMI+LP GKQ ESA ESLS VCME Sbjct: 109 ERVLTLLEALEEDDVDSKDFGVFSLATHWH---NGDTLHPEEFFGLVGETTCLRPSVGRMMIQLPTMGKQPESAVESLSAVCME 189
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.890e-13 Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = -1 Query: 1 GEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 303 GE+HLLG +PE V K++E L+E + +D SV T L ++FN A LR DFF L T Y+ G +++R PA+GKQTESA L V E Sbjct: 1224 GEDHLLGNSPE----AKSWVAKVMEGLDERRFECRDICRLSVYTQLGLMFNAAALRDGDFFHLSANTMYYNNKRGTLLMRPPAKGKQTESANGELKNVLKE 1320
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.660e-12 Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = -1 Query: 1 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVD--SKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 309 + GE+HLLG+TP+E EG + +++ L+ED + +D+ FSV T L LFN A LR + L KT Y+ GR+ +R P +GKQ +A + L TV E Sbjct: 235 VVGEDHLLGRTPQEKKEGKAWIAGVVKGLKEDVEEWNCQDWCRFSVVTQLGCLFNAACLRQKPALNLSAKTAYYNNDQGRIAMRPPKKGKQHRTANKRLDTVLKE 339
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 1.270e-5 Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = -1 Query: 178 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSV 309 IGG+ HL G TP+E+AEG +RV L++ALE +G+ SKDFVVF + Sbjct: 620 IGGD-HLFGTTPDEVAEGKRRVDALVDALEVEGITSKDFVVFMI 662 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17356.1 >prot_E-siliculosus-1a_M_contig93.17356.1 ID=prot_E-siliculosus-1a_M_contig93.17356.1|Name=mRNA_E-siliculosus-1a_M_contig93.17356.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=103bp FHANCRQRFFGGLRLLSFCREPNHHSSDARFEVGGLANQSEEILGAQGGSback to top mRNA from alignment at E-siliculosus-1a_M_contig93:359769..360078+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17356.1 ID=mRNA_E-siliculosus-1a_M_contig93.17356.1|Name=mRNA_E-siliculosus-1a_M_contig93.17356.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=310bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:359769..360078+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:359769..360078+ >mRNA_E-siliculosus-1a_M_contig93.17356.1 ID=mRNA_E-siliculosus-1a_M_contig93.17356.1|Name=mRNA_E-siliculosus-1a_M_contig93.17356.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:359769..360078+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |