mRNA_E-siliculosus-1a_M_contig93.17355.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17355.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17355.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17355.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.940e-26
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = -2 
Query:  183 YLVRYLVKNDAEFAPGAWYVNSKHSTAKGSVAFDKLVGLVQDQVEGFQWSSWRDM 347
            YLVRYLVKNDAEFAPGAWYVNSKH TAKGS+AFD+LVGLVQDQVE F WSSWRDM
Sbjct: 1046 YLVRYLVKNDAEFAPGAWYVNSKHPTAKGSIAFDELVGLVQDQVEDFHWSSWRDM 1100
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE5.940e-2690.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:358187..358534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size348
Model size350
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.5610344-CDS-E-siliculosus-1a_M_contig93:358186..3585341622936471.5610344-CDS-E-siliculosus-1a_M_contig93:358186..358534Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 358187..358534 +
1696251094.040564-CDS-E-siliculosus-1a_M_contig93:358186..3585341696251094.040564-CDS-E-siliculosus-1a_M_contig93:358186..358534Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 358187..358534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17355.1prot_E-siliculosus-1a_M_contig93.17355.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 358187..358534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17355.1

>prot_E-siliculosus-1a_M_contig93.17355.1 ID=prot_E-siliculosus-1a_M_contig93.17355.1|Name=mRNA_E-siliculosus-1a_M_contig93.17355.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=116bp
SSVPPPCDRKSRCTVPKWPNRNLNKSILFKTISPPPLALTRVCADLIASS
MTIIPSRASSYMSRHELHWKPSTWSCTKPTSLSKATEPLAVECLLLTYHA
PGANSASFFTKYLTR*
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mRNA from alignment at E-siliculosus-1a_M_contig93:358187..358534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17355.1 ID=mRNA_E-siliculosus-1a_M_contig93.17355.1|Name=mRNA_E-siliculosus-1a_M_contig93.17355.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:358187..358534+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCAAGTGTACCACCCCCTTGCGATCGAAAGAGTCGATGCACCGTACCAAA
GTGGCCAAATCGAAACCTAAACAAATCCATTCTGTTCAAAACCATATCGC
CACCACCCCTTGCTCTGACGCGTGTGTGCGCGGACTTGATCGCTTCTAGT
ATGACTATAATTCCCTCGCGTGCTTCATCCTACATGTCGCGCCACGAACT
CCACTGGAAACCCTCGACCTGGTCCTGTACCAAACCAACTAGTTTGTCGA
AGGCGACGGAGCCTTTGGCCGTAGAATGCTTGCTATTGACGTACCATGCC
CCTGGGGCAAATTCGGCGTCGTTCTTTACCAAGTACCTAACCAGATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:358187..358534+

>mRNA_E-siliculosus-1a_M_contig93.17355.1 ID=mRNA_E-siliculosus-1a_M_contig93.17355.1|Name=mRNA_E-siliculosus-1a_M_contig93.17355.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:358187..358534+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCAAGTGTACCACCCCCTTGCGATCGAAAGAGTCGATGCACCGTACCAAA
GTGGCCAAATCGAAACCTAAACAAATCCATTCTGTTCAAAACCATATCGC
CACCACCCCTTGCTCTGACGCGTGTGTGCGCGGACTTGATCGCTTCTAGT
ATGACTATAATTCCCTCGCGTGCTTCATCCTACATGTCGCGCCACGAACT
CCACTGGAAACCCTCGACCTGGTCCTGTACCAAACCAACTAGTTTGTCGA
AGGCGACGGAGCCTTTGGCCGTAGAATGCTTGCTATTGACGTACCATGCC
CCTGGGGCAAATTCGGCGTCGTTCTTTACCAAGTACCTAACCAGATAATC
AAGTGTACCACCCCCTTGCGATCGAAAGAGTCGATGCACCGTACCAAAGT
GGCCAAATCGAAACCTAAACAAATCCATTCTGTTCAAAACCATATCGCCA
CCACCCCTTGCTCTGACGCGTGTGTGCGCGGACTTGATCGCTTCTAGTAT
GACTATAATTCCCTCGCGTGCTTCATCCTACATGTCGCGCCACGAACTCC
ACTGGAAACCCTCGACCTGGTCCTGTACCAAACCAACTAGTTTGTCGAAG
GCGACGGAGCCTTTGGCCGTAGAATGCTTGCTATTGACGTACCATGCCCC
TGGGGCAAATTCGGCGTCGTTCTTTACCAAGTACCTAACCAGATAA
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