mRNA_E-siliculosus-1a_M_contig93.17353.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17353.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17353.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 103 bits (257), Expect = 5.180e-24
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*F 261
            EIEQRC RL+STEEGRA QSF+ DQGP KKQR   P WFEY T EEK+ Y S EA   + LAKK + L EID+ K C+ EL+SV  F
Sbjct:  262 EIEQRCARLRSTEEGRAYQSFVTDQGPAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLGEIDVFKTCKEELKSVGQF 348          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.340e-23
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*F 261
            EIEQRC RLQSTEEGRA QSF+ DQGP KKQR   P WFEY T EEK+ Y S EA   + LAKK + L ++D+ + C+ +L SV  F
Sbjct:  262 EIEQRCARLQSTEEGRAYQSFVTDQGPAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLRDVDVFETCKEKLNSVGQF 348          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.400e-20
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*F 261
            EIEQRC RLQSTEEGRA QSF+ DQGP KKQR   P  FEY T EEK+ Y S EA     LAKK + L  ID+ + C+ +L+SV  F
Sbjct:  262 EIEQRCARLQSTEEGRAYQSFMTDQGPAKKQRAAMPARFEYATAEEKRAYISIEATTSKVLAKKALVLRYIDVFETCKEKLKSVGQF 348          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: A0A6H5JDQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.050e-17
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYA 153
            EIEQRC+RLQSTEEGRA Q FLLDQGP KKQR + PFWFEY +DEEK+ ++
Sbjct:  173 EIEQRCDRLQSTEEGRAYQGFLLDQGPAKKQRSEEPFWFEYASDEEKRAFS 223          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: A0A6H5JC19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC19_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.480e-12
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   49 ACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*FS 264
            A Q+F+LDQ P KKQR +APFWF + + E+K++Y S        +A K M L ++D+CK  + ELQSVN F+
Sbjct:  156 AYQNFVLDQSPAKKQRSEAPFWFNFASGEQKRDYVSV-------MANKAMTLEQMDLCKTLKDELQSVNQFT 220          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.160e-12
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*FS 264
            EIEQRC RLQ TEEGRA QSF+  + P KK     P WFEY T+++K  Y + E        KK++ + EI++ ++C+  L+SV  F+
Sbjct:  433 EIEQRCARLQVTEEGRAYQSFMTGEAPPKK-HTSLPEWFEYATNDQKSAYVTAEV-------KKSVVVTEIEMHEVCKVGLESVGQFA 512          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 67.0 bits (162), Expect = 5.060e-11
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*FS 264
            EIEQRC RLQ+TEEGRA QS +  + P KK +   P WFEY T ++K  Y + +        KK++ + EI++ +IC+  L+SV  F+
Sbjct:  277 EIEQRCARLQNTEEGRAYQSVMTGEAPPKKHK-SLPEWFEYATSDQKSAYVAAKV-------KKSVVVTEIEMHEICKVGLESVGQFA 356          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 6.910e-11
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEYASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*FS 264
            EIEQRC RLQ+TE+GRA QS +  Q P KK +   P WFEY T ++K  Y + +        KK++ + E+++ ++C+  L+SV  F+
Sbjct:  277 EIEQRCARLQNTEDGRAYQSVMTGQAPTKKHK-SLPEWFEYATSDQKSAYVAAKV-------KKSVVVTELEMHEVCKVGLESVGQFA 356          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Q8QN79_ESV1K5.180e-2462.07EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
A0A6H5K200_9PHAE9.340e-2358.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5N7_9PHAE2.400e-2058.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDQ1_9PHAE5.050e-1774.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC19_9PHAE1.480e-1247.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP2_9PHAE8.160e-1244.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN80_ESV1K5.060e-1143.18EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL9_ECTSI6.910e-1140.91EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:347671..347934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size258
Model size266
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2EUDG@1,2SWJG@2759
Seed eggNOG ortholog2880.D8LPL9
Seed ortholog evalue1.7e-09
Seed ortholog score68.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936481.8833241-CDS-E-siliculosus-1a_M_contig93:347670..3479281622936481.8833241-CDS-E-siliculosus-1a_M_contig93:347670..347928Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 347671..347928 +
1696251097.8583457-CDS-E-siliculosus-1a_M_contig93:347670..3479281696251097.8583457-CDS-E-siliculosus-1a_M_contig93:347670..347928Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 347671..347928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936481.9042666-UTR-E-siliculosus-1a_M_contig93:347928..3479341622936481.9042666-UTR-E-siliculosus-1a_M_contig93:347928..347934Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 347929..347934 +
1696251097.8690712-UTR-E-siliculosus-1a_M_contig93:347928..3479341696251097.8690712-UTR-E-siliculosus-1a_M_contig93:347928..347934Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 347929..347934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17353.1prot_E-siliculosus-1a_M_contig93.17353.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 347671..347928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17353.1

>prot_E-siliculosus-1a_M_contig93.17353.1 ID=prot_E-siliculosus-1a_M_contig93.17353.1|Name=mRNA_E-siliculosus-1a_M_contig93.17353.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=86bp
EIEQRCNRLQSTEEGRACQSFLLDQGPVKKQRPDAPFWFEYVTDEEKKEY
ASTEARNYMTLAKKTMALNEIDICKICRGELQSVN*
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mRNA from alignment at E-siliculosus-1a_M_contig93:347671..347934+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17353.1 ID=mRNA_E-siliculosus-1a_M_contig93.17353.1|Name=mRNA_E-siliculosus-1a_M_contig93.17353.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=264bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:347671..347934+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAGATCGAACAGCGCTGCAACCGCCTACAGAGCACAGAGGAGGGCAGGGC GTGCCAGAGCTTCCTTTTGGACCAAGGACCCGTCAAGAAGCAAAGGCCGG ACGCACCCTTTTGGTTCGAGTACGTGACGGATGAAGAGAAAAAGGAATAT GCTTCAACTGAAGCTCGGAATTACATGACTTTGGCCAAGAAAACCATGGC ACTGAACGAGATCGACATTTGCAAAATCTGTAGGGGAGAACTGCAGTCCG TGAACTAATTCTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:347671..347934+

>mRNA_E-siliculosus-1a_M_contig93.17353.1 ID=mRNA_E-siliculosus-1a_M_contig93.17353.1|Name=mRNA_E-siliculosus-1a_M_contig93.17353.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=516bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:347671..347934+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAGATCGAACAGCGCTGCAACCGCCTACAGAGCACAGAGGAGGGCAGGGC
GTGCCAGAGCTTCCTTTTGGACCAAGGACCCGTCAAGAAGCAAAGGCCGG
ACGCACCCTTTTGGTTCGAGTACGTGACGGATGAAGAGAAAAAGGAATAT
GCTTCAACTGAAGCTCGGAATTACATGACTTTGGCCAAGAAAACCATGGC
ACTGAACGAGATCGACATTTGCAAAATCTGTAGGGGAGAACTGCAGTCCG
TGAACTAAGAGATCGAACAGCGCTGCAACCGCCTACAGAGCACAGAGGAG
GGCAGGGCGTGCCAGAGCTTCCTTTTGGACCAAGGACCCGTCAAGAAGCA
AAGGCCGGACGCACCCTTTTGGTTCGAGTACGTGACGGATGAAGAGAAAA
AGGAATATGCTTCAACTGAAGCTCGGAATTACATGACTTTGGCCAAGAAA
ACCATGGCACTGAACGAGATCGACATTTGCAAAATCTGTAGGGGAGAACT
GCAGTCCGTGAACTAA
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