mRNA_E-siliculosus-1a_M_contig93.17336.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17336.1 vs. uniprot
Match: D7FS13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS13_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 1.470e-8 Identity = 42/98 (42.86%), Postives = 50/98 (51.02%), Query Frame = 3 Query: 597 RRYEKGPFDTFTVERKKVPCLCSKG-----------F*PRFCAMQLPPDGR*-----------RAGCF---VHEMFTGNQNDLHSELDACLAPNAQYV 815
R YEKGPFDTFTVE KKV K R+ +M+ DG+ F V ++FTG+QNDLHSELDAC PNA+YV
Sbjct: 204 RNYEKGPFDTFTVEHKKVEEFIVKSKEMRSKKARALSLARWKSMKFSADGQSILIATDASLVLTLHAFEGDVKQVFTGHQNDLHSELDACFTPNAEYV 301
BLAST of mRNA_E-siliculosus-1a_M_contig93.17336.1 vs. uniprot
Match: A0A6H5KS48_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS48_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 4.930e-5 Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3 Query: 741 EMFTGNQNDLHSELDACLAPNAQYV---CPARITT 836
++ TG+QNDLHSELDAC P AQYV CPAR+TT
Sbjct: 47 QVVTGHQNDLHSELDACFTPKAQYVLSSCPARMTT 81 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17336.1 >prot_E-siliculosus-1a_M_contig93.17336.1 ID=prot_E-siliculosus-1a_M_contig93.17336.1|Name=mRNA_E-siliculosus-1a_M_contig93.17336.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=196bp MRQAFQGHSVVSWMDIYGDPPLEAATKLPQNNHIPTHEALGCRVIRCTQHback to top mRNA from alignment at E-siliculosus-1a_M_contig93:84805..92259+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig93.17336.1 ID=mRNA_E-siliculosus-1a_M_contig93.17336.1|Name=mRNA_E-siliculosus-1a_M_contig93.17336.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7455bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:84805..92259+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:84805..92259+ >mRNA_E-siliculosus-1a_M_contig93.17336.1 ID=mRNA_E-siliculosus-1a_M_contig93.17336.1|Name=mRNA_E-siliculosus-1a_M_contig93.17336.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1176bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:84805..92259+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |