Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17334.1 vs. uniprot
Match: D7G8Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z8_ECTSI) HSP 1 Score: 104 bits (259), Expect = 6.790e-24 Identity = 58/81 (71.60%), Postives = 60/81 (74.07%), Query Frame = 1 Query: 1 MSGQASPTAEDMPGSELQENSGGPYIWVHETSRQSTLRTSVAGVRPGLAVFQPVHSMSRDETTDVHGVSTRPCIQVRRPLP 243
MSGQASPTAEDMPGSELQENSG V ETSRQ TL SV GVRPGL VFQPVHS+SRDETTD HG P I + P P
Sbjct: 1 MSGQASPTAEDMPGSELQENSG-----VRETSRQCTLHPSVTGVRPGLGVFQPVHSISRDETTDAHGGIYLPPIPPKAPAP 76
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 435 |
| Model size | 1224 |
| Exons | 2 |
| Ec32 ortholog | Ec-15_002470.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936474.5358324-CDS-E-siliculosus-1a_M_contig93:63881..63962 | 1622936474.5358324-CDS-E-siliculosus-1a_M_contig93:63881..63962 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 63882..63962 + |
| 1696251095.162667-CDS-E-siliculosus-1a_M_contig93:63881..63962 | 1696251095.162667-CDS-E-siliculosus-1a_M_contig93:63881..63962 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 63882..63962 + |
| 1622936474.5545027-CDS-E-siliculosus-1a_M_contig93:65247..65601 | 1622936474.5545027-CDS-E-siliculosus-1a_M_contig93:65247..65601 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 65248..65601 + |
| 1696251095.1732776-CDS-E-siliculosus-1a_M_contig93:65247..65601 | 1696251095.1732776-CDS-E-siliculosus-1a_M_contig93:65247..65601 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig93 65248..65601 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936474.5744207-UTR-E-siliculosus-1a_M_contig93:65601..66390 | 1622936474.5744207-UTR-E-siliculosus-1a_M_contig93:65601..66390 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 65602..66390 + |
| 1696251095.1876192-UTR-E-siliculosus-1a_M_contig93:65601..66390 | 1696251095.1876192-UTR-E-siliculosus-1a_M_contig93:65601..66390 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 65602..66390 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17334.1 >prot_E-siliculosus-1a_M_contig93.17334.1 ID=prot_E-siliculosus-1a_M_contig93.17334.1|Name=mRNA_E-siliculosus-1a_M_contig93.17334.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=145bp
MSGQASPTAEDMPGSELQENSGGPYIWVHETSRQSTLRTSVAGVRPGLAV
FQPVHSMSRDETTDVHGVSTRPCIQVRRPLPSWPCSLKRPHSSFRRRGRN
IDCPFSRMITAGSTGTHEVGRSGCSIGKEFRGLEVFMYQAVDFP* back to topmRNA from alignment at E-siliculosus-1a_M_contig93:63882..66390+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig93.17334.1 ID=mRNA_E-siliculosus-1a_M_contig93.17334.1|Name=mRNA_E-siliculosus-1a_M_contig93.17334.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2509bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:63882..66390+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGTGGCCAGGCTTCTCCGACTGCGGAAGACATGCCAGGAAGCGAGCT
GCAGGAGAACTCAGGTGGGCCGTACATCTGGGTCTGTTGAAGGCGTTGGC
GGCTTTCGCGTTGAGATCGGCTTCCTCGCGCGCGCGCTCTCTCTCTCTCG
AACTCTGAACTACCCACATTTTTTGCCCTCTCTTGCCCGTTCAATGAAAG
AACTGGGCTACATGATGGCAGCCATCTATGCATAGTTGTAGGCGGTGAGG
CGCGCGCCACTTGCCATGCGGTCGTGAAGTATTTTCATGTTGAATTCTGC
GTGCGTTTCAGCTGCCCCTCCAGACCCACATTGTCTCTTCCTCAAAAACC
CGTCGGTGGTCTTTCTTTCGGATCCTGATGGCGCCTTCGGCGTCTCCTTG
AAAGCCACCACCCTCCTACGCATACCAACCTGTTGATCCGACTCCCCTCT
TGGTGTACCATGAATGCCTCATAGTGGTGTTTTGTACGCATACACAGCCA
GGTTTCGAACAATTGGGACGTTCAGTGCCCCATGGTTTCCTTTGGTAGCA
AGAGACCCACAGCGGCCCACTCGTCGGAACAATGGGGCAACAACCAGCAT
CCTTGGATCGAGGAACTACAGCAGACTTTAGACCCAGACAGCTCCGGCAA
CAACGACTGTACACGTCCCTCTCTCTGCCATTTTTACATCGAACATCGAA
CATCGAACCAATTCCATGCGCAAGTCAGGGCGAATGGCTCGGTCGCCTTT
CGCGCGCTCGTCTTGTGCGGTGCGCGCGTCGGCTTCCGAAAGCACCAGTG
CCGTTCGCTCGTTACGTCCGTGGTATAGCAAACCCCCGGCCTTGGCGACC
TTAGGAGGGGGTCTCGTTCTGAGCCCCCCCCGCTAGTCTCGGCTATCTTC
GCTCGGCGAGAGTGGGCGCGGCACGTCAACATTATGTTGTTTTTCTCGTG
AGCCGCCGCCCTAGATCTTTGAGCAGACATTTTTGATATTCAGTTGAAAG
TTGCGTGTTGTTTGCACACAGAAGCGTTTTCTCCCTCTTGTCTACTGCTT
GTACACACCGTGCTAGTCACCGAAATCCTGCACCCAAGCCATTGAATTGG
TTTTGGTTGTGCTGAAACCGCCAACCACTCATGTGTGACCAATCGCCGTG
TGGTTCGTTGCAACGACAACGCACACCGCAGCAGGGTTACTCAACTTCAA
CGAAGTAGTACGACGGCGACACGCTACAGTATCAAAGACGGGAGCCAGCG
GGCAGCACGCAAACAGTCTTCCTCTTCGCTTCGTCTTGTGCTCCAAATGC
GCTGTTGCCGCCCTGTATTGAAGAGAACCTTCCCGCCTACATGCTTACTG
CTGTTGTCTTGTTCAGGTGCACGAGACCTCACGCCAAAGCACGCTGCGTA
CGAGTGTTGCCGGCGTTCGGCCCGGGCTAGCCGTGTTTCAACCTGTGCAC
AGCATGTCGCGGGACGAGACCACCGACGTGCACGGGGTATCTACCCGCCC
TTGCATCCAAGTACGGCGCCCCCTCCCCTCGTGGCCATGCAGCCTGAAGC
GACCCCACAGCTCTTTTAGACGGAGAGGTCGAAACATCGACTGTCCCTTC
TCCCGTATGATAACAGCAGGAAGCACTGGAACTCACGAAGTTGGTCGTTC
TGGCTGTTCCATAGGAAAAGAGTTTCGTGGGCTTGAGGTTTTCATGTACC
AGGCAGTTGATTTCCCCTGAACGAGTTCGTATTTGTATTGGTGCAAAATT
CGACGCCTGTGCAATCAATCAAGCTTTCGGCGTCAGGATTCACGTGAGAA
CAGACCTTTTCTGTGTTTTTCAATCGAGACACTCGGCAGGCACTATTCTG
CTCTGGTATCGGCCCCCTGTGTCGTTCTTGGCTTCCTATGGGTTGTGCGT
GGAGAGTCGAGTTTTACCTGAAGGTTTTGGGGTACTGTCGAAGAGTATGT
GGTTTGGCTCACAAGGCACAGTAGAAAGCTCAAGACGTTTTGGCTCTCTT
GATAATGTCTCTAGCCTTTTCTTGAGGGTTTAGGGCGTCGCACGTCGCCA
CCAGTGATTCGTTAGATTCACAACCGGTCCCGTTGCGAGATGACGCGCGT
TGGTAGACAGGTGCGGTACTTTTCTCAGCCCACTCGTGGATGAATCAGAA
AGGAAGAGCCTCCCAGTCTATGTCTTTACGCTTTGGTACGGGTGGCAAAG
GATGCACCTTGGTTGAGGCTTTCAAGGGGCAGTTGCCGAGTGACAGCCTC
TGTTGGGACTTGGCCTTCAGCGATGTGATACGAAGGAACGGGCTTAGAAG
AACTGATGACTGAAGGGCTTCGGGGTGTTGGTAGCTGCGGCGCTTCGGCG
ATGAAAAAAGGTTACATCAACTACATTGAGTGGTTTGTACCGTATTTTTG
TTTTGTTTCCCCGCGGCGTCGTATGTGCTGGGTGTTTGCGACCACGGGCT
CCCCATTTTTGTGGACTGAAAAGCAAATGTGAGAAGCAACAACAACTTGT
GCTGTCGAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:63882..66390+ >mRNA_E-siliculosus-1a_M_contig93.17334.1 ID=mRNA_E-siliculosus-1a_M_contig93.17334.1|Name=mRNA_E-siliculosus-1a_M_contig93.17334.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=870bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:63882..66390+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGTGGCCAGGCTTCTCCGACTGCGGAAGACATGCCAGGAAGCGAGCT
GCAGGAGAACTCAGGTGGGCCGTACATCTGGATGAGTGGCCAGGCTTCTC
CGACTGCGGAAGACATGCCAGGAAGCGAGCTGCAGGAGAACTCAGGTGGG
CCGTACATCTGGGTGCACGAGACCTCACGCCAAAGCACGCTGCGTACGAG
TGTTGCCGGCGTTCGGCCCGGGCTAGCCGTGTTTCAACCTGTGCACAGCA
TGTCGCGGGACGAGACCACCGACGTGCACGGGGTATCTACCCGCCCTTGC
ATCCAAGTACGGCGCCCCCTCCCCTCGTGGCCATGCAGCCTGAAGCGACC
CCACAGCTCTTTTAGACGGAGAGGTCGAAACATCGACTGTCCCTTCTCCC
GTATGATAACAGCAGGAAGCACTGGAACTCACGAAGTTGGTCGTTCTGGC
TGTTCCATAGGAAAAGAGTTTCGTGGGCTTGAGGTTTTCATGTACCAGGC
AGTTGATTTCCCCTGAGTGCACGAGACCTCACGCCAAAGCACGCTGCGTA
CGAGTGTTGCCGGCGTTCGGCCCGGGCTAGCCGTGTTTCAACCTGTGCAC
AGCATGTCGCGGGACGAGACCACCGACGTGCACGGGGTATCTACCCGCCC
TTGCATCCAAGTACGGCGCCCCCTCCCCTCGTGGCCATGCAGCCTGAAGC
GACCCCACAGCTCTTTTAGACGGAGAGGTCGAAACATCGACTGTCCCTTC
TCCCGTATGATAACAGCAGGAAGCACTGGAACTCACGAAGTTGGTCGTTC
TGGCTGTTCCATAGGAAAAGAGTTTCGTGGGCTTGAGGTTTTCATGTACC
AGGCAGTTGATTTCCCCTGA back to top
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