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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17333.1 vs. uniprot
Match: D7G8Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z9_ECTSI) HSP 1 Score: 332 bits (850), Expect = 3.120e-108 Identity = 208/226 (92.04%), Postives = 210/226 (92.92%), Query Frame = 1
Query: 1 MAEEKPMTVKERMAALARASGQSSVAPAPVPRASGAATGPSVAERLAKMRAGPADAPTGEAPRLVRTLTPHPGAPTVVTSMPGGAGDSSKSGGSSSVADRIASLSGSGSGKSSILPPSPSGRPAGSSVSPAAGKTSQ-GEGEVSAPAEAPAASKLSPGLAARMNAMRSSTDSVPEGEEGEXXXXXXXXXXXXXXXXXXXXSSKVSPGLAARMGKAFPIPMPGGGMP 675
MAEEKPMTVKERMAALARASGQSS APAPVPRASGAATGPSVAERLAKMRAGPADAPTG+APRLVRTLTPHPGAPTVVTSMPGGAGDSSKSGGSSSVADRIASLSGSGSGK SILPPSPSGRPAGSSVSPAAGKTSQ GEGEVSAPAEAPAASKLSPGLAAR+NAMRSSTD VPEGEEGEXXXXXXXXXXX SKVSPGLAARMGKAFPIPMPGG P
Sbjct: 1 MAEEKPMTVKERMAALARASGQSSAAPAPVPRASGAATGPSVAERLAKMRAGPADAPTGDAPRLVRTLTPHPGAPTVVTSMPGGAGDSSKSGGSSSVADRIASLSGSGSGKPSILPPSPSGRPAGSSVSPAAGKTSQHGEGEVSAPAEAPAASKLSPGLAARLNAMRSSTDYVPEGEEGEXXXXXXXXXXXLATSGSSSSFSKVSPGLAARMGKAFPIPMPGGEQP 226
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1167 |
| Model size | 1646 |
| Exons | 6 |
| Ec32 ortholog | Ec-15_002460.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936474.300367-UTR-E-siliculosus-1a_M_contig93:58734..59213 | 1622936474.300367-UTR-E-siliculosus-1a_M_contig93:58734..59213 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 58735..59213 - |
| 1696251095.0739422-UTR-E-siliculosus-1a_M_contig93:58734..59213 | 1696251095.0739422-UTR-E-siliculosus-1a_M_contig93:58734..59213 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 58735..59213 - |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17333.1 >prot_E-siliculosus-1a_M_contig93.17333.1 ID=prot_E-siliculosus-1a_M_contig93.17333.1|Name=mRNA_E-siliculosus-1a_M_contig93.17333.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=389bp
MAEEKPMTVKERMAALARASGQSSVAPAPVPRASGAATGPSVAERLAKMR
AGPADAPTGEAPRLVRTLTPHPGAPTVVTSMPGGAGDSSKSGGSSSVADR
IASLSGSGSGKSSILPPSPSGRPAGSSVSPAAGKTSQGEGEVSAPAEAPA
ASKLSPGLAARMNAMRSSTDSVPEGEEGEEEEETPPPPPALATSGSSSSS
SKVSPGLAARMGKAFPIPMPGGGMPAGGVAELKRRKQEKEQAERAAAGMP
EEPKPSETAVEQKPGELQHANLSRPTISQRRRPRKATRPFKPTATAAAAV
PAAAVPAAAPASPPCATEPESATSSVPEKAASSEENTAEETAAPAAAAAA
AVTPAQEETNSVGKMNSMLKAASIDVAGDNGDDDEWDE* back to topmRNA from alignment at E-siliculosus-1a_M_contig93:58735..62733- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig93.17333.1 ID=mRNA_E-siliculosus-1a_M_contig93.17333.1|Name=mRNA_E-siliculosus-1a_M_contig93.17333.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3999bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:58735..62733- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCGAGGAGAAGCCGATGACCGTTAAGGAGCGGATGGCAGCGTTAGC
TCGTGCTTCCGGACAGAGTTCAGGTATTGCGTAGGTTACCGAGAGCGACG
CTCAGAAACGAATGTGTTGCAGCGGTCCCCGTGCCTGCATAGGATCTCAA
CTGCTCCAGAAGCTCTCTAGGTAGACATGCGTATGTTTTCGTGTTCGGTG
AATAGTCGGACACAAACATGGCATTGTGGCAGCCACTATGTCGACACTTG
GGTTGCACGCCGGAGCGTATGCAAGCACTCAGAGAAACGCCGGAATAATT
TTTAGCACTTTAAGCTACCTTCAGCACGAACATATCTGCATCGAGTTGTT
GCGTGCGGCTACTCCGCAGGCCACATGATATGAGACACTGCTGTGTCTGC
CTGCCATTTTCAATCGGGGTTTTGTAACCCCAGTTAAGTACGTCACGTCT
GATGTCCGGCAATAGGAAGTCGGCCCGTTTTCAAACCTGCTTGGGCTCGC
TCGCGGATAGCATAGGTGTGTACTGCAGCACTAGCCTGATTTCCTTGTGC
ATCCTCCGGGGTGCGGCCTTAAAAGCTGTGTCTGCCTGAGGCAGACAGGT
ACCGAGGTATACCTTTGACTGCCACGTTCAAACACCCACGGAAGGCGCTT
GGCGTTTCCGGGGCACACGGCTGCATCGCTTACGGCCTTGCCGTCCACTT
AGAGTCGAACCCAAACGGCCCATTTGTTCTCATGTCGCGTTGCCACATCC
ATTCGCACGCGTCGTGAACCCCCCCCTCCCCTCTCGGGCACAGTCGCCCC
CGCTCCCGTGCCGAGGGCGAGCGGCGCCGCTACGGGGCCCTCCGTCGCAG
AAAGGCTTGCCAAGATGCGAGCAGGACCAGCTGACGCTCCGACAGGAGAG
GCCCCCCGGCTGGTGCGAACCCTCACCCCTCACCCTGGCGCCCCGACGGT
AGTCACGTCAATGCCCGGCGGAGCTGGAGGTGGGAAACCCTCTTGCAATG
TACGCGTTTGACTCGAGAGTTTCTAGGATGATCACTGCTGGCGCCTGTTG
ACGGTTGCGTGTGGAAGCGGCTCAAACAAAAAATTAGTGCCCCACAGATA
CGAAGGGACGGCGCGGTCTGGATGTCCCCTGGTTGCAGCTGTTGGTGCAT
GCAACGGGATAAGTGTGCATGCACTCGCGTCTGGGCCGAACTGAATGATC
TGAAAGTTCCGACACGTGGCGCCTGTATACTACTGCTGCCGCCCTGTGGC
TTCTCCGCCGCTACTTGTTTTTCTCTCTCCTGTACGTTGCCTGCAAGAGG
TTTCGCCGCCATTTTTCGGCTTCCCCGCATCTCATCGCTTGCAACCATGC
AATGCCACGCGCTGTTTGGCGCCGGCTTTGGCGACCAATAACCTGACCCT
CGCTTGCCTAGCCATGCCTATGACTACTGTTATTCTAAACACCCGAACAT
TGGTTCCGTTGCTGCGCGCTTGAAAGATTCCTCCAAAAGCGGCGGCTCCT
CCAGCGTTGCGGACAGAATTGCCTCCCTGAGCGGAAGCGGAAGCGGCAAG
TCCTCTATCTTGCCGCCCAGCCCCTCAGGGAGACCGGCTGGTTCGTCAGT
CTCCCCGGCAGCTGGAAAGACATCGGTGAGAGGCGAAAACTCCGACCGTA
TTGACCACGATCATCTTCGATTATTTTTGGGGACTGGTCTGAAGTGCGGC
ACATGTAATCTCGACCATCGGGTCTTTGCATGCCCTCCCCTCCTCCTCCC
AACAACGAAGCGGCACGGATGAAATAATCGTGGAATAGGGTACGACTTGC
GCGAAATCGAGAAGTGTGAGCTGGTCGATCGACGGAAGCACGCGTGTGCC
CATGTGAGGGATGAGATTGGTCTCACTACCTCATATTGGGAAGGTGAATG
ATGAGGACCTCCCAGCTTGTCCGGTACTTGGTTTTGCTGTGTATTCATAG
CCTGCGCTACACAGGTAGCATGTGCAGGTCCAGGGGGTGCTTGGAGCACA
TATAGACAAAACTAGAATATCATTTCGCAAACGACCTCACACAAAAAATC
CGTGCCCTGCCATCTCCCGCCCACCTCCCTACCTTGAAAACACAACTGAT
AAAATGTACCCAACAGCAAGGTGAAGGTGAAGTGTCCGCGCCGGCAGAAG
CTCCCGCCGCGTCCAAGCTTTCGCCTGGGCTTGCAGCCCGCATGAACGCG
ATGAGATCGAGCACAGATTCTGTGCCGGAGGGGGAGGAGGGGGAGGAAGA
GGAAGAGACTCCGCCCCCCCCGCCTGCTTTGGCCACGTCCGGGTCGAGCT
CTTCGTCTTCGAAGGTGTCCCCCGGTCTCGCGGCTCGTATGGGGAAAGCC
TTCCCAATTCCTATGCCTGGTGGTGAGCAGCCCTGTTGATAGATTGGATT
CTCTTCCTGTTGTCCATGCGTATGTGAACCGTTGCAAGGATTTCGAACTT
ATGCCGCGCTTTGCTGCTTTCAGCAGCTTGCTGGAATTTTGGTGGTTGGT
TTACACTCCGATGTCGATGACGTACACGCGGTTCAAGGCCGCCTTGATTT
CTGCGTAGAAGATTTCTGTTGACAGGAGCTTTTGTCTTGACGAGCTTTTG
TCTTGTCTAGTGTGAGTGCTGATTAAAGTAGTGAACAAGACAACAGCAGT
AGGTATCTAATTTGACGTGCTTTGGTTCTAATTTGACGTACGTATTCCCA
GGTGGTATGCCGGCGGGGGGTGTGGCGGAGCTGAAACGTCGCAAACAAGA
GAAAGAACAGGCGGAGAGAGCGGCAGCAGGCATGCCCGAGGAGCCAAAGC
CGTCCGAGACGGCAGTGGAGCAAAAGCCCGGCGAGCTGCAGCACGTGAGT
ATTTATGTCCCTGTACATCAGGAGGAATAAAGTCGACCGGTTGGTAGACA
CGTTAGTGGGCCGTCTACCGTTGGTGGAAGTAATAATCTGTCGCGCTGGT
CTTGGCTACGCGACGGTGGTACACCCGGGGGTTGGGTGGAGGATTATTAT
TTTACATGCGATACGTACAGGAAGCGTGCGGCACTTGCAGGTTTTTGGGG
CGATCGTGGCAATTCTCCTTGTGTGTTGCGAATGCTTGCTGTATCTCAAG
ACACGATGCCTACGTGCACGCCGCCCACCCCCACCCCGACCTTGTCCACG
AATCAAACAGGCGAACCTATCCCGTCCTACTATTTCTCAAAGAAGGCGGC
CCCGCAAGGCAACCAGGCCGTTCAAACCGACCGCGACAGCGGCAGCAGCA
GTACCAGCAGCAGCAGTACCAGCAGCAGCCCCAGCATCTCCACCGTGTGC
CACGGAACCAGAGAGCGCAACCTCGAGTGTGCCGGAGAAAGCAGCTTCGT
CAGAAGAAAACACGGCAGAGGAGACGGCTGCCCCGGCAGCAGCAGCAGCA
GCAGCAGTAACACCAGCACAAGAGGAAACGAACTCTGTTGGCAAGATGAA
CTCCATGTTAAAGGCCGCGTCGATCGATGTTGCCGGGGACAACGGGGATG
ATGACGAATGGGACGAGTAGAAGTGACGTGACGTGCGCAGCGAGGAGGGT
CCCAGCTTAGATCCACTGGGTAGGTTTGCCAATCGTTTGCTTAGATCACA
AGAGGGTACGTAAGTGAACTCTAGTTTCTGAGACCCTCGAGGTACGTAGA
TGCTGGCACCTTCGGCCTTTTCGTTGTTCGACTGAAGCCTTAATAGTTTG
GATTGGGTTTTGCCGTGTTGCATCGGAGGTCCTTCCCAGCGGTCTCGCAT
GCCCCGCTCTCTGCGTAGAACACCATAAGTACGCATACCTAAGAGTAGCT
TGGACTCATCTGTACACATTGTTGCAGCACCATATACAGCATGGGGTCCT
TCTCAGGGCAGGGGAACCCCCAAAGCCTTGGCCTAGCTGGCCTACGTACC
GACACGGTTTGTTGGCTTATTCGCCTGAACACACCTTTCCATAGTCCTCA
GCCCCACCCAAAAGAGTTGGAAGTGACTTTGATATGTACAGAACAATAT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:58735..62733- >mRNA_E-siliculosus-1a_M_contig93.17333.1 ID=mRNA_E-siliculosus-1a_M_contig93.17333.1|Name=mRNA_E-siliculosus-1a_M_contig93.17333.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2334bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:58735..62733- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCGAGGAGAAGCCGATGACCGTTAAGGAGCGGATGGCAGCGTTAGC
TCGTGCTTCCGGACAGAGTTCAGATGGCCGAGGAGAAGCCGATGACCGTT
AAGGAGCGGATGGCAGCGTTAGCTCGTGCTTCCGGACAGAGTTCAGTCGC
CCCCGCTCCCGTGCCGAGGGCGAGCGGCGCCGCTACGGGGCCCTCCGTCG
CAGAAAGGCTTGCCAAGATGCGAGCAGGACCAGCTGACGCTCCGACAGGA
GAGGCCCCCCGGCTGGTGCGAACCCTCACCCCTCACCCTGGCGCCCCGAC
GGTAGTCACGTCAATGCCCGGCGGAGCTGGAGTCGCCCCCGCTCCCGTGC
CGAGGGCGAGCGGCGCCGCTACGGGGCCCTCCGTCGCAGAAAGGCTTGCC
AAGATGCGAGCAGGACCAGCTGACGCTCCGACAGGAGAGGCCCCCCGGCT
GGTGCGAACCCTCACCCCTCACCCTGGCGCCCCGACGGTAGTCACGTCAA
TGCCCGGCGGAGCTGGAGATTCCTCCAAAAGCGGCGGCTCCTCCAGCGTT
GCGGACAGAATTGCCTCCCTGAGCGGAAGCGGAAGCGGCAAGTCCTCTAT
CTTGCCGCCCAGCCCCTCAGGGAGACCGGCTGGTTCGTCAGTCTCCCCGG
CAGCTGGAAAGACATCGATTCCTCCAAAAGCGGCGGCTCCTCCAGCGTTG
CGGACAGAATTGCCTCCCTGAGCGGAAGCGGAAGCGGCAAGTCCTCTATC
TTGCCGCCCAGCCCCTCAGGGAGACCGGCTGGTTCGTCAGTCTCCCCGGC
AGCTGGAAAGACATCGCAAGGTGAAGGTGAAGTGTCCGCGCCGGCAGAAG
CTCCCGCCGCGTCCAAGCTTTCGCCTGGGCTTGCAGCCCGCATGAACGCG
ATGAGATCGAGCACAGATTCTGTGCCGGAGGGGGAGGAGGGGGAGGAAGA
GGAAGAGACTCCGCCCCCCCCGCCTGCTTTGGCCACGTCCGGGTCGAGCT
CTTCGTCTTCGAAGGTGTCCCCCGGTCTCGCGGCTCGTATGGGGAAAGCC
TTCCCAATTCCTATGCCTGGTGCAAGGTGAAGGTGAAGTGTCCGCGCCGG
CAGAAGCTCCCGCCGCGTCCAAGCTTTCGCCTGGGCTTGCAGCCCGCATG
AACGCGATGAGATCGAGCACAGATTCTGTGCCGGAGGGGGAGGAGGGGGA
GGAAGAGGAAGAGACTCCGCCCCCCCCGCCTGCTTTGGCCACGTCCGGGT
CGAGCTCTTCGTCTTCGAAGGTGTCCCCCGGTCTCGCGGCTCGTATGGGG
AAAGCCTTCCCAATTCCTATGCCTGGTGGTGGTATGCCGGCGGGGGGTGT
GGCGGAGCTGAAACGTCGCAAACAAGAGAAAGAACAGGCGGAGAGAGCGG
CAGCAGGCATGCCCGAGGAGCCAAAGCCGTCCGAGACGGCAGTGGAGCAA
AAGCCCGGCGAGCTGCAGCACGTGGTATGCCGGCGGGGGGTGTGGCGGAG
CTGAAACGTCGCAAACAAGAGAAAGAACAGGCGGAGAGAGCGGCAGCAGG
CATGCCCGAGGAGCCAAAGCCGTCCGAGACGGCAGTGGAGCAAAAGCCCG
GCGAGCTGCAGCACGCGAACCTATCCCGTCCTACTATTTCTCAAAGAAGG
CGGCCCCGCAAGGCAACCAGGCCGTTCAAACCGACCGCGACAGCGGCAGC
AGCAGTACCAGCAGCAGCAGTACCAGCAGCAGCCCCAGCATCTCCACCGT
GTGCCACGGAACCAGAGAGCGCAACCTCGAGTGTGCCGGAGAAAGCAGCT
TCGTCAGAAGAAAACACGGCAGAGGAGACGGCTGCCCCGGCAGCAGCAGC
AGCAGCAGCAGTAACACCAGCACAAGAGGAAACGAACTCTGTTGGCAAGA
TGAACTCCATGTTAAAGGCCGCGTCGATCGATGTTGCCGGGGACAACGGG
GATGATGACGAATGGGACGAGTAGGCGAACCTATCCCGTCCTACTATTTC
TCAAAGAAGGCGGCCCCGCAAGGCAACCAGGCCGTTCAAACCGACCGCGA
CAGCGGCAGCAGCAGTACCAGCAGCAGCAGTACCAGCAGCAGCCCCAGCA
TCTCCACCGTGTGCCACGGAACCAGAGAGCGCAACCTCGAGTGTGCCGGA
GAAAGCAGCTTCGTCAGAAGAAAACACGGCAGAGGAGACGGCTGCCCCGG
CAGCAGCAGCAGCAGCAGCAGTAACACCAGCACAAGAGGAAACGAACTCT
GTTGGCAAGATGAACTCCATGTTAAAGGCCGCGTCGATCGATGTTGCCGG
GGACAACGGGGATGATGACGAATGGGACGAGTAG back to top
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