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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17328.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI) HSP 1 Score: 498 bits (1282), Expect = 2.930e-170 Identity = 262/267 (98.13%), Postives = 265/267 (99.25%), Query Frame = 1
Query: 100 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSKLQSMSVLAEGPLDEEEEEAAEEGAEASKRMTALSILESLSQTPAAPVDGSRVDAESVESLTNIVDERPPIEDDVFELDGLEGVNEELEALSLSEAGSSNMA 900
MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGS+LQSMSVLAEG LDEEEEEAAEEGAEASKR+TALSILESLSQTPAAPVDGSRVDAESVESLTNIVDER PIEDDVFELDGLEGVNEELEALSLSEAGSSNM+
Sbjct: 1 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGSLDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEAGSSNMS 267
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 903 |
| Model size | 2207 |
| Exons | 5 |
| Ec32 ortholog | Ec-15_002420.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936472.5676062-UTR-E-siliculosus-1a_M_contig93:27362..28666 | 1622936472.5676062-UTR-E-siliculosus-1a_M_contig93:27362..28666 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 27363..28666 - |
| 1696251094.4454715-UTR-E-siliculosus-1a_M_contig93:27362..28666 | 1696251094.4454715-UTR-E-siliculosus-1a_M_contig93:27362..28666 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 27363..28666 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17328.1 >prot_E-siliculosus-1a_M_contig93.17328.1 ID=prot_E-siliculosus-1a_M_contig93.17328.1|Name=mRNA_E-siliculosus-1a_M_contig93.17328.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=301bp
MAYISAGAAGRDKDSKQSAEGAAGGDKESQLSAMLSSPSAGGMRLAGNYA
HRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANR
RGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDL
PPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSKL
QSMSVLAEGPLDEEEEEAAEEGAEASKRMTALSILESLSQTPAAPVDGSR
VDAESVESLTNIVDERPPIEDDVFELDGLEGVNEELEALSLSEAGSSNMA
* back to topmRNA from alignment at E-siliculosus-1a_M_contig93:27363..31313- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig93.17328.1 ID=mRNA_E-siliculosus-1a_M_contig93.17328.1|Name=mRNA_E-siliculosus-1a_M_contig93.17328.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3951bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:27363..31313- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCATATATCTCCGCAGGGGCAGCCGGCCGTGACAAAGACTCCAAACA
ATCAGCCGAAGGGGCAGCCGGCGGTGACAAAGAATCCCAACTTTCAGCTA
TGCTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGGAACTATGCC
CACCGTGGCTCTCCCGGTGAGGGATGTCTGCTAAACTTGGTTGGTTGGCG
AGTTTTCTTTTTGTTTGTTCGTCTTGTTTGTGTCTGCAGGTGTTGGCAAG
CGTAGTCCTTCATGTTTCATGTGTTGGCAAGATCCTGAACACTGCATCTG
CGCTTGAGGTACCGCACCTGTCGTTGAGCTGACGCGTGTTTTTTTGCGCA
CAGGCATGCGTCGAGATTCCGTCGCCAAGTATGCTGGATCATTGAGTTGT
GCTACCGTCATTTCTTTGCACTGTGTTAGCTACTATATGCAATCCATCGA
TTGTGCGCGTGTTTTGTGTGTGCAAGCGTGAGTTCTGAAGGGGATCATCA
CGGCTAACAGCATGTATGCGACGACCACAGAAGAACGGGGAAGATTTTTT
TTCGCGACCGTAGGTTACTGGGTTTCCTAGAATCCCCGCAAGGATTTGTA
TCAATATTATGGGAATATTGAGCCTTGTGACCTTGTGCTGTCTGGACTTC
GTTTGTCTATTCTCCAGGTGTAGTTCGGCGGACAGCCAGTAGACCCATCT
CTATCATTCGCTCTACATCGGTCCCAGCTCAGCTCCAAGATAGAACGCAG
GCCGGTGACCCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAG
GAGGGGCCTTCACACTCGCGACAGGAGTCTTCAGCACGATTTCAATAGCG
GTGCGGCAGGAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAG
GCTCCCCTGCTGGCGGGGTCCCTCCCTCCGTCGCGTTTTTTGGATGACTT
GCCACCCCTCAGTCTCGGGCCGCAGGTGTGTTTATAGGACAACGTGATGC
AATTTATTTTCGCCAGGAGCGGAGCGTAGCAACAGTGTCTTGGTGCAAAG
GATTGCGGTGAGAACGTAGCCTGGTTATTTTTGTATCCTTGATGCGACTT
TCTACGAGACCCACGATCGATGTACGTGCTGCCGAGCTTGTCTGTACAAG
AAGTTTTGGAAGACATTCTGGTTTTGCATGAATGACTTGCTTTCCCCCAC
TTTCGTCGTTCCATGTGACGTACTCATAGGGGAAAGAAGTGCCAGCAATC
TGCTCTCCTTTGGTGGGCCTGCCAGGTCTAACCTCTGATAGCTAGATACA
TGCGCTGTCCGTAGTCCGGCCCATGGACATCGCTTAATACGCAACGGTCC
GCTGTTCGCATCACCCATCCCCGGGGACGTTGCCCCTGTTCTGGCGCAGG
CTGACAATTCGTTTGACTCCGATTGTGGTGCGCTCTCGACGTCGTTGAAG
GCAAACCGCCTGGTAAGTGGTGTCTTGTCTACCCTCCCCGGCTTTTCCGA
ATCAAACCGTTACGTTCCATGCGCAAGATGCACGGCAGTCGTCCGCGATT
TAGGGACACCCTCTCTGTTGGAAGCTCTCTTTTTTAAGTTAGAAGTACGT
GTTTTCGCGAGCAGGACGGGTGCGAATGTTGTGGCACACCCCGAGAGGGC
CACGTGATTATAGGTATCCTGTTTGTATCAGACACCCCGCCACCGAGACG
TTCGGCAACAGATTTGTAGCTCCTCTGTTCGGTGTTTTGTGGCCGCCCCG
AAGTAGCACGTTGTCACCTCGTGCGGGCAATTATTGTTTAGCCTGCCCGC
TCCAAGATGCCCCAGTGCATTCTCCCTTCGCTTGGCGCTGCCCAAGACTG
ACGGTTACATGCGTTTCAATGTTTTTTCTAAATTGTGTTTTCCTCCACAC
CGCCCACATCCCTCGCGTTTTCGGTCCTATCGGTGTTGGTCGTTGTCATG
ACAAACGCAGTACGCCACGTCTTGTCCGGCAAACATCGGAGCGCATTTTG
GCCGCCCGCCAGGATCGAAACTCCAGTCCATGTCCGTTCTCGCAGAGGGG
CCGTTAGATGAGGAGGAGGAAGAGGCGGCGGAGGAAGGGGCAGAGGCGTC
GAAGAGGATGACGGCCCTGTCCATTTTAGAGTCTCTGTCGCAAACGCCCG
CGGCACCCGTGGACGGGTCGAGAGTGGACGCAGAGTCTGTAGAATCGTTG
ACGAATATCGTAGATGAGCGACCGCCCATCGAAGACGACGTGTTCGAGCT
GGACGGACTGGAAGGGGTGAGAATGAAATTTGGCAGCAGTTGCAGCAGTT
GGCTCTGACTTGAAAAGAGAGTACATACGCATCTTGTTCAAAACTGGCGT
GCATTGGTATGGGCGTGTCGAATCGGCCGGTGCAGACCTCCTATGAAACT
AGTACCTGCTCTCTTGTTCATCACACAACCCTCTGTTCGCAACATCATGA
TGTGCTACACGCCAGCTACGCACGGCACGCCAGTGAAAAGCATGCATTCC
TTTTGTGGATGACGCATCCTCGTACTCCGCTAGTATGCTGTTTGTATTGT
TTTATCAACCTTAAACCACGCTCTTGTTTGTTCGCAGGTGAACGAGGAGC
TGGAGGCTCTTTCTCTCTCCGAAGCAGGCAGCAGCAACATGGCTTAGCTC
GCTCGCTTTCCCTCAACGGCATGGAGCCTGCCTTAGCAGGATAAGGGCAG
TCTTGGGACTCTGACACTCCGCTTCCCGTTACATGTCGCAGCGTTGCTTA
CCATCCTTGGGCAACAACTGTACATCAAATCGAGCTGTAGAGCTGGCCAG
GTCCGCGTTAGGGCGTCCCTAGCTGGCACAGCGCCCAATGCCATAGCTTG
GCGCTGGAGCCCGACGTTTGGGTCTGGATTGATCGACTGTGTTGGTTTGG
ACAACGGCTGAGCTGCCCGTTACTTGGTGCTACAAGCGTATTTTTGTGTT
TACACACGTAGGGTAGGACACAGTAAGTTTGGTGCAAGTGGTTGAAAGTT
TGCGGTTCCTTTTTTTGGTCTTGTTTGTGTGCATAGTCCCCATTTGTTGC
GTTGCGCGACGAAGCGTAGGATAGAGGGTGCTTGACAGATGCGCATTTCG
TTTGGTTGTTGACAGATAAATTACCATGAGTTTGCAGGTATCAAAAGATG
GTTGGTCTTGTACAAAAGGAGCACAGTCGTAGATGCAGCTGTGGGCTGTG
GTCACAGCAATTGTTGCGATGATATATATATGTGAAAGGGTTCTTTTTTA
TGCGGGAGGATGCATGAAGATGCATGCACACAACCCCCTAAATGGGGCAT
TTGTTGCAACCCCCAGGCATTTATCTCGGATGTTATCAAGTGCTTTCTCT
GAAGTTTTGGATAGAGGATCATGTTCGCTCGGATGCGTAGCACATCCCCG
AGAGTGTATTCCTAGGGGCGCTGTAATGATGATCGAAACCCTTCCGTTGA
CTCGCTCGGATGCGTAGCACATCCCCGAGAGTGTATTCCTAGGGGCGCTG
TAATGATGATCGAAACCCTTCCGTTGACTCACTGCAAGGACACGGTACCA
CAGAAATTATCAACACCGATCCTTGGCCTCTTTTACGGTGTCAGTTTCTG
TTGTAAAACCGAGTGATTTTTCTTCAATCGACTTTGGGAGGTTCTTGGAT
TTTCGAGCGGGGTGGATAGAAGCGTAGCTGCTGCGATGCATGCATCCCTT
GTTGCAAGGTCGGTGCCAAGATCTTGGTCGGTTTTTGAGAAAATCGCGTC
TCTTCGTGGGCCTCATCTAGAACAACCAATTTTTTTTCATTTCTTCAGTT
TCGCGACCTCCGCGTAACCTGTGCGCGCCCGTCTGCAAGCTTCACCTTCT
TCGTGTGTGCATGTTGTGATTTGTTTTGGGTGTGGAAGCTCACGGAGAGC
CAAGGCGTCCACACATTCAAAACCATGAATACATATGCATGATGTTCCGA
G back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:27363..31313- >mRNA_E-siliculosus-1a_M_contig93.17328.1 ID=mRNA_E-siliculosus-1a_M_contig93.17328.1|Name=mRNA_E-siliculosus-1a_M_contig93.17328.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:27363..31313- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCATATATCTCCGCAGGGGCAGCCGGCCGTGACAAAGACTCCAAACA
ATCAGCCGAAGGGGCAGCCGGCGGTGACAAAGAATCCCAACTTTCAGCTA
TGCTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGGAACTATGCC
CACCGTGGCTCTCCCGATGGCATATATCTCCGCAGGGGCAGCCGGCCGTG
ACAAAGACTCCAAACAATCAGCCGAAGGGGCAGCCGGCGGTGACAAAGAA
TCCCAACTTTCAGCTATGCTGTCTAGCCCCTCTGCCGGGGGCATGCGATT
GGCAGGGAACTATGCCCACCGTGGCTCTCCCGGTGTAGTTCGGCGGACAG
CCAGTAGACCCATCTCTATCATTCGCTCTACATCGGTCCCAGCTCAGCTC
CAAGATAGAACGCAGGCCGGTGACCCGGATCCGGAAGGGGGTAGCGGAGG
CAACCCTGCAAATAGGAGGGGCCTTCACACTCGCGACAGGAGTCTTCAGC
ACGATTTCAATAGCGGTGCGGCAGGAGGAGTTAATGGGATCGTCCAGTCC
CTCCCTCCACCGCAGGCTCCCCTGCTGGCGGGGTCCCTCCCTCCGTCGCG
TTTTTTGGATGACTTGCCACCCCTCAGTCTCGGGCCGCAGGTGTAGTTCG
GCGGACAGCCAGTAGACCCATCTCTATCATTCGCTCTACATCGGTCCCAG
CTCAGCTCCAAGATAGAACGCAGGCCGGTGACCCGGATCCGGAAGGGGGT
AGCGGAGGCAACCCTGCAAATAGGAGGGGCCTTCACACTCGCGACAGGAG
TCTTCAGCACGATTTCAATAGCGGTGCGGCAGGAGGAGTTAATGGGATCG
TCCAGTCCCTCCCTCCACCGCAGGCTCCCCTGCTGGCGGGGTCCCTCCCT
CCGTCGCGTTTTTTGGATGACTTGCCACCCCTCAGTCTCGGGCCGCAGGC
TGACAATTCGTTTGACTCCGATTGTGGTGCGCTCTCGACGTCGTTGAAGG
CAAACCGCCTGGCTGACAATTCGTTTGACTCCGATTGTGGTGCGCTCTCG
ACGTCGTTGAAGGCAAACCGCCTGTACGCCACGTCTTGTCCGGCAAACAT
CGGAGCGCATTTTGGCCGCCCGCCAGGATCGAAACTCCAGTCCATGTCCG
TTCTCGCAGAGGGGCCGTTAGATGAGGAGGAGGAAGAGGCGGCGGAGGAA
GGGGCAGAGGCGTCGAAGAGGATGACGGCCCTGTCCATTTTAGAGTCTCT
GTCGCAAACGCCCGCGGCACCCGTGGACGGGTCGAGAGTGGACGCAGAGT
CTGTAGAATCGTTGACGAATATCGTAGATGAGCGACCGCCCATCGAAGAC
GACGTGTTCGAGCTGGACGGACTGGAAGGGTACGCCACGTCTTGTCCGGC
AAACATCGGAGCGCATTTTGGCCGCCCGCCAGGATCGAAACTCCAGTCCA
TGTCCGTTCTCGCAGAGGGGCCGTTAGATGAGGAGGAGGAAGAGGCGGCG
GAGGAAGGGGCAGAGGCGTCGAAGAGGATGACGGCCCTGTCCATTTTAGA
GTCTCTGTCGCAAACGCCCGCGGCACCCGTGGACGGGTCGAGAGTGGACG
CAGAGTCTGTAGAATCGTTGACGAATATCGTAGATGAGCGACCGCCCATC
GAAGACGACGTGTTCGAGCTGGACGGACTGGAAGGGGTGAACGAGGAGCT
GGAGGCTCTTTCTCTCTCCGAAGCAGGCAGCAGCAACATGGCTTAGGTGA
ACGAGGAGCTGGAGGCTCTTTCTCTCTCCGAAGCAGGCAGCAGCAACATG
GCTTAG back to top
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