mRNA_E-siliculosus-1a_M_contig921.17317.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig921.17317.1
Unique NamemRNA_E-siliculosus-1a_M_contig921.17317.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig921.17317.1 vs. uniprot
Match: D7G561_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G561_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.330e-27
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 AHHPGMPTTTSPEPEQITAARIRVQTFYKYRREGEAVHDFIRTAEVEVATYEEMQR 168
            AHHP MPTTTSPEP+QIT ARI+VQTFYKYRREGE VHDFIR AEV+VATYEEMQR
Sbjct:    4 AHHPDMPTTTSPEPDQITTARIKVQTFYKYRREGEPVHDFIRKAEVQVATYEEMQR 59
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BLAST of mRNA_E-siliculosus-1a_M_contig921.17317.1 vs. uniprot
Match: D7G603_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G603_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.440e-25
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 AHHPGMPTTTSPEPEQITAARIRVQTFYKYRREGEAVHDFIRTAEVEVATYEEMQR 168
            AHHP MPTTTSPEP+QIT ARIRVQTFYKYRREGE VHDFIR AEV+VATYE+MQR
Sbjct:    4 AHHPDMPTTTSPEPDQITTARIRVQTFYKYRREGEQVHDFIRKAEVQVATYEDMQR 59
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BLAST of mRNA_E-siliculosus-1a_M_contig921.17317.1 vs. uniprot
Match: D7G5U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.200e-24
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 AHHPGMPTTTSPEPEQITAARIRVQTFYKYRREGEAVHDFIRTAEVEVATYEEMQR 168
            AHHP MPTTTSPEP+QIT ARI+VQTFYKYRR GE VHDFIR AEVEVATYEEMQR
Sbjct:    4 AHHPDMPTTTSPEPDQITTARIKVQTFYKYRRVGEPVHDFIRKAEVEVATYEEMQR 59
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig921.17317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G561_ECTSI1.330e-2787.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G603_ECTSI1.440e-2587.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5U4_ECTSI2.200e-2487.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig921contigE-siliculosus-1a_M_contig921:9..176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size153
Model size168
Exons1
Ec32 orthologEc-00_008600.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.259836-CDS-E-siliculosus-1a_M_contig921:8..1611622936470.259836-CDS-E-siliculosus-1a_M_contig921:8..161Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig921 9..161 -
1696251093.4484448-CDS-E-siliculosus-1a_M_contig921:8..1611696251093.4484448-CDS-E-siliculosus-1a_M_contig921:8..161Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig921 9..161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.2743099-UTR-E-siliculosus-1a_M_contig921:161..1761622936470.2743099-UTR-E-siliculosus-1a_M_contig921:161..176Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig921 162..176 -
1696251093.4648614-UTR-E-siliculosus-1a_M_contig921:161..1761696251093.4648614-UTR-E-siliculosus-1a_M_contig921:161..176Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig921 162..176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig921.17317.1prot_E-siliculosus-1a_M_contig921.17317.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig921 9..161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig921.17317.1

>prot_E-siliculosus-1a_M_contig921.17317.1 ID=prot_E-siliculosus-1a_M_contig921.17317.1|Name=mRNA_E-siliculosus-1a_M_contig921.17317.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=51bp
MPTTTSPEPEQITAARIRVQTFYKYRREGEAVHDFIRTAEVEVATYEEMQ
R
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mRNA from alignment at E-siliculosus-1a_M_contig921:9..176-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig921.17317.1 ID=mRNA_E-siliculosus-1a_M_contig921.17317.1|Name=mRNA_E-siliculosus-1a_M_contig921.17317.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig921:9..176- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCTCATCATCCGGGCATGCCGACGACGACGTCGCCAGAACCCGAACAGAT
CACCGCAGCGAGGATCAGGGTGCAGACTTTCTATAAGTATCGCAGGGAGG
GCGAGGCAGTGCATGACTTCATACGGACAGCAGAGGTCGAAGTCGCTACC
TACGAGGAGATGCAAAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig921:9..176-

>mRNA_E-siliculosus-1a_M_contig921.17317.1 ID=mRNA_E-siliculosus-1a_M_contig921.17317.1|Name=mRNA_E-siliculosus-1a_M_contig921.17317.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig921:9..176- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGACGACGACGTCGCCAGAACCCGAACAGATCACCGCAGCGAGGAT
CAGGGTGCAGACTTTCTATAAGTATCGCAGGGAGGGCGAGGCAGTGCATG
ACTTCATACGGACAGCAGAGGTCGAAGTCGCTACCTACGAGGAGATGCAA
AGGATGCCGACGACGACGTCGCCAGAACCCGAACAGATCACCGCAGCGAG
GATCAGGGTGCAGACTTTCTATAAGTATCGCAGGGAGGGCGAGGCAGTGC
ATGACTTCATACGGACAGCAGAGGTCGAAGTCGCTACCTACGAGGAGATG
CAAAGG
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