mRNA_E-siliculosus-1a_M_contig92.17300.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17300.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17300.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: D7FKS2_ECTSI (50S ribosomal protein l19-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS2_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 2.960e-147
Identity = 217/221 (98.19%), Postives = 218/221 (98.64%), Query Frame = 1 
Query:    1 MLCNTACRLATRLVGSRERGVVAISRNLAVQEAASSHLPSAAAGGSRAPGEASAGRWRWASTQATQTAVEGITLNVDEKVQRLKHRIPQKRASFLLNELRQEQRNGERCELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRITGGGGSDN 663
            MLCNTACRLATRLVGSRERGVVAISRNLAV EAASSHLPSAAAGGSRAPGEASAGRWRWAS QATQTAVEGITLNVDEKVQRLKHRIPQKRASFLLNELRQEQRNGERCELPDMKIGDA+EVTMYANKKA RTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRITGGGGSDN
Sbjct:    1 MLCNTACRLATRLVGSRERGVVAISRNLAVHEAASSHLPSAAAGGSRAPGEASAGRWRWASMQATQTAVEGITLNVDEKVQRLKHRIPQKRASFLLNELRQEQRNGERCELPDMKIGDAIEVTMYANKKATRTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRITGGGGSDN 221
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A835ZJ13_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ13_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.190e-31
Identity = 59/134 (44.03%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:  244 RLKHRIPQKRASFLLNELRQEQRNGERCELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRITG 645
            R+KH+IP+KRAS LL  +++E       + PD K GDA+E  M     A +   VRG++L +  +GI SS ++RDV+    +E  +PL+SPL++S+ V++   IY+GK  GKRVRP++IYY+R+LD K  ++TG
Sbjct:   52 RIKHKIPEKRASMLLGFVQKEAIAARPLDFPDFKTGDAIECQMLPYMTAPKAEPVRGIVLGRFKRGIASSFIVRDVLYDEAIERRVPLYSPLLKSITVLKRRAIYEGKQEGKRVRPSKIYYLRNLDNKYSQVTG 185
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A7R9UET9_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.250e-22
Identity = 51/133 (38.35%), Postives = 84/133 (63.16%), Query Frame = 1 
Query:  247 LKHRIPQKRAS----FLLNELRQEQRNGERCELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLY 633
            LKH  P+K+A+     L NE+++E R  +  ELPD ++GD V V+    K   +     GV++    KG+D SIL+R V+ G+  E  +PL+SPL+++VE++E   I++GK  G+RVR +++YY+R+ +   Y
Sbjct:   68 LKHVGPRKKANKVMTTLANEMKKELRQRQGIELPDYRVGDKVRVSFLQAKSEEKPDDYVGVIIANPKKGVDESILVRGVVKGDCFEVRVPLWSPLLKAVEILEPRCIHKGKKAGRRVRRSKLYYLRNREPSTY 200
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: B8BTE2_THAPS (50S ribosomal protein l19-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTE2_THAPS)

HSP 1 Score: 99.8 bits (247), Expect = 3.360e-22
Identity = 55/141 (39.01%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:  250 KHRIPQKRASFLLNELRQEQRNGERCELPDM-----KIGDAVEVTMYA-----NKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRIT 642
            K + P+KRAS L N+L+ E  N  +   P++     K+GDAVE+ +       N +  +  ++RGV+L + N+G+D+SI L+DV+ G  VE  I L SP++++++V+E  F+ +GK +GKRVR A++YY+RD   +  R+T
Sbjct:   10 KFKNPRKRASKLFNQLKLEAVNKSKESKPEVWNVPFKVGDAVELQVLDSGGVDNPQNKKLDKIRGVVLGRENRGMDTSIYLKDVLFGEHVERKIKLHSPMVKTLKVLEEGFVNRGKRKGKRVRRAKLYYLRDRKPEETRVT 150
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A1Z5JBA1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBA1_FISSO)

HSP 1 Score: 99.8 bits (247), Expect = 4.430e-22
Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:  250 KHRIPQKRASFLLNELRQEQRNGERCELPDM-----KIGDAVEVTM-YANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRIT 642
            K + P+KRAS LL EL+ E     +   PD+     ++GDA+E+ +   N +     ++RGV+L    KG+D S+LLRDV+ G PVE  I L SPL+QSV+++E  F+Y+GK + KR   A++Y++RD + +L R+T
Sbjct:   51 KFKSPRKRASKLLQELQGELVKSNKANKPDVWGTHFRVGDAIELVIGRENAEKNEIEKIRGVVLGISRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEENFVYKGKRKVKR---AKLYFLRDRNPELTRVT 184
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A7S2P9J5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P9J5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.510e-22
Identity = 54/141 (38.30%), Postives = 89/141 (63.12%), Query Frame = 1 
Query:  250 KHRIPQKRASFLLNELRQEQRNGERCELPDM-----KIGDAVEVTMY-----ANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRIT 642
            K + P+KRAS L NEL+ E     +   P++     K+GDAVE+ +       N +  R  ++RGV+L + NKG+D+ I L+DV+ G  VE  + L SP+++S++V+E  F+ +GK +G+RV+ A++YY+RD   +  R+T
Sbjct:   24 KFKNPRKRASKLFNELKLEAVADSKSSKPEVWEVPFKVGDAVELEVLDSGGVQNPQNKRYDKIRGVVLGRENKGLDTGIYLKDVLFGEHVERKVKLHSPMVKSLKVLEEGFVNRGKKKGRRVKRAKLYYLRDRKPEETRVT 164
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A7S1GN95_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN95_CYCTE)

HSP 1 Score: 99.0 bits (245), Expect = 8.470e-22
Identity = 53/138 (38.41%), Postives = 89/138 (64.49%), Query Frame = 1 
Query:  250 KHRIPQKRASFLLNELRQEQRNGERCELPDM-----KIGDAVEVTMYANKKA--ARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRIT 642
            K + P+KRAS L  EL  E     + E PD+     ++GD+VE+ M         +  +VRG+++ KVN+G+ SS+++RDV+ G PVE  IPL+SP+++S++++E  F+++GK + KR   A++YY+R+     YR+T
Sbjct:   49 KFKSPRKRASQLFEELNNEAVKKAKEEKPDVFAENPRVGDSVELEMVGEGGTLEGKLEKVRGLVIGKVNRGLASSLIVRDVVFGEPVEWKIPLYSPMVKSLKILERNFVFKGKRKVKR---AKLYYLRERSPNEYRVT 183
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A7S3MA30_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MA30_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.020e-21
Identity = 54/136 (39.71%), Postives = 86/136 (63.24%), Query Frame = 1 
Query:  244 RLKHRIPQKRASFLLNELRQEQRNGERC--ELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGI--DSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRI 639
            R +H+IPQKRAS L+  L++E     +   E PD   GDA+E+       A     ++GV++ + NK +  D+S+LL +V +G  VE  IP++SPLI+ ++V++ AFI++GK   KRVR +++YY+ DL  K Y +
Sbjct:   29 RTRHKIPQKRASNLMTILKEEGLQALKAGREWPDFSAGDAIEIHKLPYMSATVPDVIKGVVIGRFNKHMRMDASLLLLNVESGTKVERRIPIYSPLIKDIKVIQKAFIHKGK---KRVRRSKLYYLSDLHPKFYTV 161
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A7S2STI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STI0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.110e-21
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 1 
Query:  133 GSRAPGEASAGRWRWASTQATQTA-VEGITLNVDEKVQ------------RLKHRIPQKRASFLLNELRQEQRNGERCELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLD 621
            GSR  G  +  RW+W S    +   + G ++ V E++             R KH+IP K+AS L+ ELR E+        P  + GDAV+VT+     A      +GV++ KVN+G DS+ +L++V  G  +E  I  F+P++Q ++V+  AFI++   R KRVR +++YY+RD D
Sbjct:    5 GSRGSGRVA--RWKWGSDMLGRAGFLLGRSMRVLERLGYQALSTAGPAAGRKKHKIPMKKASKLMQELRMERMKAVPTH-PPFRTGDAVQVTLLPYATAPSPVTHKGVVIAKVNRGPDSNFILKEVYLGEVIERRIQTFAPMVQDIKVLHKAFIHK---RDKRVRRSKLYYLRDRD 174
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Match: A0A6S8DEX2_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8DEX2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.460e-20
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 1 
Query:  217 TLNVDEKVQRLK----HRIPQKRASFLLNELRQE--QRNGERCELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRIT 642
            T + D+KV   K    HR   KRA+ L++ L +E  Q   +  E+PD K GDA+E+    N  + R +  RGV L + N GI SS  +  V++  PVE+H PL+SPLI  + +++  FI +G    K+VR A++YYIRDL    Y +T
Sbjct:  201 TPDFDKKVATRKNLWYHRKAHKRANHLIHHLNKELSQERRQHFEVPDFKGGDALEIHFQGNMASGRDNIFRGVCLARRNAGISSSFKIIGVVDEVPVEYHFPLYSPLISKIRLVKKGFIKKG---AKKVRRAKVYYIRDLPSSTYTVT 345
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS2_ECTSI2.960e-14798.1950S ribosomal protein l19-like protein n=2 Tax=Ect... [more]
A0A835ZJ13_9STRA1.190e-3144.03Translation protein SH3-like domain-containing pro... [more]
A0A7R9UET9_9STRA3.250e-2238.35Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
B8BTE2_THAPS3.360e-2239.0150S ribosomal protein l19-like protein n=1 Tax=Tha... [more]
A0A1Z5JBA1_FISSO4.430e-2241.61Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2P9J5_9STRA5.510e-2238.30Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1GN95_CYCTE8.470e-2238.41Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3MA30_9STRA5.020e-2139.71Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2STI0_9STRA8.110e-2135.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S8DEX2_9STRA2.460e-2039.86Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:559560..565898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size666
Model size795
Exons5
Ec32 orthologEc-21_001910.1
Ec32 ortholog description50S ribosomal protein L19
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGs2S8N4@2759,COG0335@1
EggNOG free text desc.Ribosomal protein L19
Seed eggNOG ortholog2880.D7FKS2
Seed ortholog evalue1.5e-115
Seed ortholog score422.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17300.1prot_E-siliculosus-1a_M_contig92.17300.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 559560..565769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936466.4604168-CDS-E-siliculosus-1a_M_contig92:559559..5598311622936466.4604168-CDS-E-siliculosus-1a_M_contig92:559559..559831Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 559560..559831 +
1696251091.7617764-CDS-E-siliculosus-1a_M_contig92:559559..5598311696251091.7617764-CDS-E-siliculosus-1a_M_contig92:559559..559831Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 559560..559831 +
1622936466.4792233-CDS-E-siliculosus-1a_M_contig92:560310..5604071622936466.4792233-CDS-E-siliculosus-1a_M_contig92:560310..560407Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 560311..560407 +
1696251091.7836087-CDS-E-siliculosus-1a_M_contig92:560310..5604071696251091.7836087-CDS-E-siliculosus-1a_M_contig92:560310..560407Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 560311..560407 +
1622936466.4942968-CDS-E-siliculosus-1a_M_contig92:564791..5648511622936466.4942968-CDS-E-siliculosus-1a_M_contig92:564791..564851Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 564792..564851 +
1696251091.794581-CDS-E-siliculosus-1a_M_contig92:564791..5648511696251091.794581-CDS-E-siliculosus-1a_M_contig92:564791..564851Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 564792..564851 +
1622936466.512191-CDS-E-siliculosus-1a_M_contig92:565180..5652851622936466.512191-CDS-E-siliculosus-1a_M_contig92:565180..565285Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 565181..565285 +
1696251091.8081193-CDS-E-siliculosus-1a_M_contig92:565180..5652851696251091.8081193-CDS-E-siliculosus-1a_M_contig92:565180..565285Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 565181..565285 +
1622936466.5308516-CDS-E-siliculosus-1a_M_contig92:565637..5657691622936466.5308516-CDS-E-siliculosus-1a_M_contig92:565637..565769Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 565638..565769 +
1696251091.82297-CDS-E-siliculosus-1a_M_contig92:565637..5657691696251091.82297-CDS-E-siliculosus-1a_M_contig92:565637..565769Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 565638..565769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936466.5515945-UTR-E-siliculosus-1a_M_contig92:565769..5658981622936466.5515945-UTR-E-siliculosus-1a_M_contig92:565769..565898Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 565770..565898 +
1696251091.8393958-UTR-E-siliculosus-1a_M_contig92:565769..5658981696251091.8393958-UTR-E-siliculosus-1a_M_contig92:565769..565898Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 565770..565898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17300.1

>prot_E-siliculosus-1a_M_contig92.17300.1 ID=prot_E-siliculosus-1a_M_contig92.17300.1|Name=mRNA_E-siliculosus-1a_M_contig92.17300.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=222bp
MLCNTACRLATRLVGSRERGVVAISRNLAVQEAASSHLPSAAAGGSRAPG
EASAGRWRWASTQATQTAVEGITLNVDEKVQRLKHRIPQKRASFLLNELR
QEQRNGERCELPDMKIGDAVEVTMYANKKAARTSQVRGVLLRKVNKGIDS
SILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARI
YYIRDLDQKLYRITGGGGSDN*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig92:559560..565898+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17300.1 ID=mRNA_E-siliculosus-1a_M_contig92.17300.1|Name=mRNA_E-siliculosus-1a_M_contig92.17300.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6339bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:559560..565898+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGTGCAATACCGCGTGCCGGTTGGCCACTAGGTTGGTGGGAAGTAG
AGAAAGAGGTGTTGTGGCGATTAGCAGAAACCTTGCGGTCCAGGAGGCCG
CATCATCGCACTTGCCCTCTGCGGCAGCAGGAGGGTCTAGGGCACCAGGA
GAAGCATCAGCCGGTCGATGGAGATGGGCTTCCACGCAGGCTACGCAAAC
AGCAGTCGAGGGAATCACCCTTAACGTGGATGAGAAGGTCCAAAGGCTGA
AGCATCGTATACCCCAAAAGCGGTGAGTTCAAGGTCTCCGGCATCTGCTT
CGTCCCTCGTTGATTGCTGTATGCTACGTCTACTATTTACTGAGTACTGC
TGTGCATTGATGACCACCTTCCGCTTGGATAATGGCCCTACAGCACAAGC
TTTTGCACACGTGCACATGACTAGCCTTGGACCATTTTGCTGGGGGTGGT
CTTATTCACTCGCCTTTGTCCGCAGAATTTCCCTCGCTTGATTGCCTCCT
AGCTATAGGCCGTTAGGTGTGGCGGCGCCATACACACACCTCTTTCCCCC
TCTGCCGCCACACCGCGCCCGCCTCGTTATGGATCACGTATCATATGTGT
ATGCACTGAAAGTCAACGTTGCGCAAACCGCAAGACTTCCCACCGCACTC
GCAGCTCTCGCATGCATACGACCGAATGTTAACGGTGTATCCGACTCTCT
GCTGCTGCTGCGTGATAATATTATTGATGTGTTTTCTATCTCGGTCGCTA
GGGCCTCGTTTCTTCTCAACGAGTTGCGTCAGGAGCAGCGCAATGGGGAG
CGATGTGAATTGCCAGACATGAAGATTGGGGACGCCGTTGAGGTTACGGT
AAGTGCCGCTCTCTGTCGTTGCGTCTGCTGGTTGTCCTGTTCGTGGAAAA
CAGCGGTTGCGAGAAACGAACAATGCAGCAGCCACTCCTGGTGCGAGGGT
GCGTAGTACGGGCCCTCTAGTGCAGGAAACCTTCGTGCTTTTGCCAGCGA
AGGTCGTTCATGGCCTACGGGATGATTATATCGTTTTTGACATTGCAGTC
GCCCGCAACGCGACGGCCCGCAAGGTGACGGAAATGTTAGTGTTTACTTA
CTTTTGCCAACCGTCTGACATGTGGGACATGAGTTCGAATCTCGGTGCTT
TCGCGTCCAATTTGTTTTTGTCTCACATCATGCCCAACAAGTGGGGAGAT
GTTTTCGTGGATACTGGTTCACGTTTAGACGTGGAGGTCCACAAGGGTAA
GGGACAGCTGAATCCTGCTGGTAGCTACTCCAGTATGTCTACAGCAGTAT
GAAGCTGAGGCCAGCAACGTCGGAGGATGGTGGAGAAACGGAGCACCTGC
TGGCTCAGTGTGACCCCGGCTGGTGCATCCAGATGCTGCCGTACGTGCTG
CTCTAGACCGGTTCACACCATTACAGCAGTTATAGGCCGGCTGTTTTGCC
TACGAAAATTGGCACATGGGTCAAACGAAAAAGACGGCAGAAGAGGCGAG
AAAAGACCCGGCCGCAAGGCCCAACCTCGCATCACCACCACGTACAGCGC
CCGCCCCCTGATTGATGGTCGGATCACCACGACACCTTCAGGACTGCTGT
ACGCCCCTCGTCTGTGTGCGGGCTTCTTCGAGGCTGGTCGTGGTTACTGC
TGTGGTTAATTTTCGGTGGAGGGCGGTGATTCCGTGCGAGTGAAAAGCGC
GCACTGATGTGTGGACGTTTCGCCCGTGAAAGATCCAGCCTGACGTCCGT
AACAGATGGCATGGCTGATGACTGAACGACCAACACACACACACAGATGC
ATTTACGACTCGAACGTTTTTCGACGCCGAGTTGTTTGTGTCTCTTCGTC
CTATTCTGGGCGCCAGACTTGCCCTTTCTTGTTCTGTGTTTGACACACCA
GCAGGGGTAACACACGAAGAACTATAATTCATTCTTCATCTGTCGACTTT
TCCTACTGCGTTGCTTACCTTCAGTTTTGAATACGAGAAGGGCTCAGCAG
TCCCTTCCCTTTTTGTTCTAGGCCCAGCCGAAAACCTTAAAATCAAAGGG
AGAGTTGTCGGGAGGCAAGAGAAAGAGATAGTCTCTGACCCAAAGATTGG
GCATTTGCTTTTCCATTGCTGGCGGCACGAGGCGTAGGCAATATCACGAC
GTTACATTAATACGAATCTGGTCTTGCGGTTGAACGGTGTCATAACTACA
TATGCATATGCAACTCTTTTATTCGCGTCGTCGGGATGGATACGCGCCCT
GTCGGGGCCGCACCAAGTGCGCCAACAGCCATCATTCTCTTAAACCCCGT
TCTAGTCTATCTAGATCTCAACTTTTTTCAATCTTGACTGTAGGTTTGTC
TGAAGCAAAGGAATGGGCTTGCTAGGTACTGTGACGGCTGTGTTGGGAAA
GACAGGGTCGCGTGCTGCGGTGGTTAACTCTGTTGCCGGTGTAGGCTGAT
AACCAAGAGAGGCAGGGCCTGCGGATATTCTTCGCTTACTGTGCTTGTGC
CGAAAATGAAAAACAGTGTACGCAAGGATGTCGTTGCCTTATGCCGCAAC
GCTTAACAAAGCGGACTAATTACACCTGATGAAGTGTAAAACTGCTGTCA
TGCGTCGTCAATTGTTTAGTAGCGACAACGCGCCGGGCATCGACCGATTG
GACTTGGTACAATATGTTGATTGCTTGCGTAGGGTTATTCGATACTGAGG
TATCACGCAAGGCAACGAACGCATGGATGAGCGATAAGATGGTTTTCGTT
CTAACACCGCTCGCTGGCTTTATCCGGAAACATTGAACCGTTATCTTCAG
AGGTAAAAAATCCCACCTACAGCTGTATCATGTAGAGGATCCACCCAGCC
AGCCAGAGTGGAGAAATTTACAGTCCCCCAGCTGCCTATGCATACGACGC
TCGTAACCGATTACACGCGACCTTTCGACAATAGCCGCCTGTTTTTTTGT
AAATCTTCCTGCATGTGAAACACAAGACCTGTTGTATGCGACAGCAACAC
GGGCGAGAGTACGAAGTCTGCTTTGACCCGAGCCATCCACCATCAGTATC
TTGACCGGGCTTGGAGCATGCTTCTGCTAACCTCTGTCGAATATCCATTT
ATGATTCTGTTTTGCACGCGTGTTTGGTTGGGGGCTATTGTGAATATCGT
GCGCACGCATGGTTGACGAGTAAACGATCGCGCAGATCGAACATGTCGCA
AACGTACGTACGCGTGGGGTTGGCTGCGGACCGCGTTGTGCGCACGGTTT
GATGCGAACCAAGAAAATAGTTGCTTTGTTTTCGAACCAGCTCTTTCGAA
CACCGCAGGGGGATAGATAGATGCCCCTCGACGTCCGAAAAGATGGAGAA
TACGCCACACGTGAATAATTGCACATACATACATGGATGGGGCCAGATGG
AGGATTGCCTATGGTTGATATTGCTGCGGTGAATGTACGGGTTTTGCTGC
ACGTATGGTTGACGACGAGGAATATCATGAGGGTTGATGTCACCATCCAC
AAGTGATCGATTAGTTTCGTAATTTCACGTTCGTGAGCGACATAGTGAGG
CAGACAGAGCACACCATTCTGGTGGGCGATGGCAGGGAGTAAGAGCTGAC
TCGGTTTTTGGTCTTCAAGTCCAGGGAAAGAACGAACCCAAGGCCTGCCT
CAATTTTATTTGAAAACAGAAAATGTAGCACGCGAAGACCAGAAATGGTA
GAAGATGACGTCACGCACGTGGCCGCTTGCCCGTATTTGCTGCTCACATT
CAAGCCGGTCGCCCCGGTGGTCTAGTTGGTATCCTCGAAACCTTCTAGAG
GTCAAGTCAGGGGTTCGAATCCCGGCGTAAGCGAGCTTTTCTTGTAAAGT
GAGTTTTTCTCTCGCTTCCGCTCCTGGCCTAGTGGGTAGCGCTAGTTCGT
GTGTACGCAGAGGAAAGGGAGTGCTGAACTCTTCTCGCGTTAATAATGGA
AGGCAAAGTACCGCAGGAGGGGAGGGTAGAGAGGGGCTCTTCTGTGTGAC
CACGGGTTGGAGTAAACGGCACTAGAGCTGTGAGCGCTGATTTGAAGTCA
AGACAAAAAAAAAAAAAAATCATAAGTTCATACCGCACGCACTGAGTACC
TCATATGCCGCTTGTGCAGCTCTACCGTAGTACGCGCTGCCACCTCCCTA
AGCGTGGGCCATACAAGTGAAGGTCGCTAGGTAATTGCACGCTAGGTACG
CGCCCATTTATACATTAAAGAGGCAGCAACCAGCCACACGCTGCTCATTC
TTCTCTCTCGTCGTGTTGACTCCTGTTACATCTTGCCGCACACACTACAC
CCTCACCCCGATCACGCGGTCGGAAACGCTGATCGCCACGAAGCCTTTTA
GAGACGGACGCCCCGCTCTTCTCTTAGCTATAGTCGTCAATTCGATGTTT
GTTTGCTTGCGGTAGGCTGACCCGGAGAGTTGTAGTGCTGCGTAGAGCGA
GAACTGTTTTTTCTTGCCGAGCGGTGGGTTTTTCTCCCCTCGAACATACA
AGATACTGCTGCTCAGAAATAAAGGCTCTCACTATGCAAGCCTATCATAG
GGCCATTAACATCTGGTACAGTATGGTTTGCTCAAAGGAGCGCTGTGAGT
GGCGCCCTCAACAAATGTCGTTGTGATGGGCTGAGGGAGCAAGACGGGGT
GGGCAGGGCAATGTGTCGTTTGGAACTTTCACAAACCCCATGTGTAACAG
CGTGTTGTCCAGTGTTGTTCCACCCTCAGACCACTCTCGTATTTCCGCCG
CGTGATCTCTGAGACACCCACGAGGTTATTTGTATCCTGCAGTACCGCAT
GAAGCCCCACGGGTTATCTCGGGGTGTACCCCGCGAATCAACTGTTCCTG
CAAAGAACAAACTGATTGCAACCAACGGTTGCCTTAATGTATGTGTTGTC
CTTTGCCATCGCTTCAGACACCAGGGTTGGATGGTCCCGAACGAACTGTG
TGGAAACGCCCAAAGAAAGAAGTGATCCAAGGCTGACTTGTTTTTGGGGG
GCATTGGTTCAGTGTCTCGGCTACAAGTTTGTGGATAGTGACGCCAGAGG
CATGACCACTGCTGTGTCGTCATGCGGACTATTTCAAGACGCTCTGACCT
GCCACAAGGTGTAGCACCCACCGGGTCTAAAACATGACCATCTCCGCACG
CAACGCCATGGAGCAACATTTTCCAAGCGTGCGTTCCTGTGAACTCATCG
TTCCTGTTGTTTTTGTATACACCATGTCTCAGATGTATGCAAACAAGAAA
GCGGCACGGACGAGCCAAGTTCGAGGAGTGCTCTTGCGGAAGGTGGGTGG
ACAGTTCAATTTTGAGTACTGCTGTAGGTGTCGTCCACGGCTCCGGCGTT
AGGCCTTGAAAATGTGACGCCCGGGCGTGCGTACCATCAGACCGTCAGAA
CCTTTGCTCTATCAACAGCAGGGTATTGACGGTGTTCTTGTTGGGTGTTC
AGGCCCGCTAGTCAACCCTTGAGGTGCATTTCTCGCCAGAGTCAGCGAAG
CTTCGACGCTAGATTCGAGGCGTCGCTCAGTCCGTCACGTCAGGCGAATG
GATCGTTTCAAGCACCAAACTTGTGAACGACTCAACAAACGTACATCACT
GTGGGTTTGGCGGCACTGCAGGTGAACAAGGGTATCGACTCTTCCATACT
GCTCAGGGACGTCATCAACGGCAACCCGGTCGAGCACCACATTCCGCTGT
TCAGCCCGTTGATCCAATCCGTCGAGGTGGGTGGTTGTTCAGGGGTAGCA
CGAGTTGCGCGTTTGGTTGCATGCATGCATTACGGCACATCGTGCATGAC
GAGCAAGGTGAAGAGAAGAACGCATCTTGTATGATGACCCCCTCCTGTGT
GACCCCGGCCGGTGCGTCTCAAACAAAACACGCCGAAGGCGTAAAACTGA
TGTAAAACTGACCTGGAGAGTAAATGGGGTGACCACACACGCAATCCAAG
ACAACTTCGTCCGTTTCTGCATGCGCCGTTAAGTTGATCATCGTTCCTAC
AGGAAGATCATCAGCGCATCTAAACCATGGTGTCCATTGCCGCACGCCAC
CTTTGATACTATTCATACCGCGTTTCAGGTGATGGAGACGGCCTTCATAT
ACCAGGGCAAGTTGAGGGGCAAGCGTGTACGACCGGCACGTATTTACTAC
ATTCGGGATCTGGACCAGAAGCTTTACCGAATCACTGGGGGCGGTGGATC
GGATAACTAGCTCTAGGGGTTGGAAATGTGTTTTTTGAAAGCCCACAAGG
AGGGAGTGACCTCGATGTGCTACAATTCCGGGGCATCGTTAGCGTAGGCC
ACGTTGGGAGCGAGCGGTATCACAATACGAAAAGACGAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:559560..565898+

>mRNA_E-siliculosus-1a_M_contig92.17300.1 ID=mRNA_E-siliculosus-1a_M_contig92.17300.1|Name=mRNA_E-siliculosus-1a_M_contig92.17300.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1332bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:559560..565898+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGTGCAATACCGCGTGCCGGTTGGCCACTAGGTTGGTGGGAAGTAG
AGAAAGAGGTGTTGTGGCGATTAGCAGAAACCTTGCGGTCCAGGAGGCCG
CATCATCGCACTTGCCCTCTGCGGCAGCAGGAGGGTCTAGGGCACCAGGA
GAAGCATCAGCCGGTCGATGGAGATGGGCTTCCACGCAGGCTACGCAAAC
AGCAGTCGAGGGAATCACCCTTAACGTGGATGAGAAGGTCCAAAGGCTGA
AGCATCGTATACCCCAAAAGCGATGCTGTGCAATACCGCGTGCCGGTTGG
CCACTAGGTTGGTGGGAAGTAGAGAAAGAGGTGTTGTGGCGATTAGCAGA
AACCTTGCGGTCCAGGAGGCCGCATCATCGCACTTGCCCTCTGCGGCAGC
AGGAGGGTCTAGGGCACCAGGAGAAGCATCAGCCGGTCGATGGAGATGGG
CTTCCACGCAGGCTACGCAAACAGCAGTCGAGGGAATCACCCTTAACGTG
GATGAGAAGGTCCAAAGGCTGAAGCATCGTATACCCCAAAAGCGGGCCTC
GTTTCTTCTCAACGAGTTGCGTCAGGAGCAGCGCAATGGGGAGCGATGTG
AATTGCCAGACATGAAGATTGGGGACGCCGTTGAGGTTACGGGCCTCGTT
TCTTCTCAACGAGTTGCGTCAGGAGCAGCGCAATGGGGAGCGATGTGAAT
TGCCAGACATGAAGATTGGGGACGCCGTTGAGGTTACGATGTATGCAAAC
AAGAAAGCGGCACGGACGAGCCAAGTTCGAGGAGTGCTCTTGCGGAAGAT
GTATGCAAACAAGAAAGCGGCACGGACGAGCCAAGTTCGAGGAGTGCTCT
TGCGGAAGGTGAACAAGGGTATCGACTCTTCCATACTGCTCAGGGACGTC
ATCAACGGCAACCCGGTCGAGCACCACATTCCGCTGTTCAGCCCGTTGAT
CCAATCCGTCGAGGTGAACAAGGGTATCGACTCTTCCATACTGCTCAGGG
ACGTCATCAACGGCAACCCGGTCGAGCACCACATTCCGCTGTTCAGCCCG
TTGATCCAATCCGTCGAGGTGATGGAGACGGCCTTCATATACCAGGGCAA
GTTGAGGGGCAAGCGTGTACGACCGGCACGTATTTACTACATTCGGGATC
TGGACCAGAAGCTTTACCGAATCACTGGGGGCGGTGGATCGGATAACTAG
GTGATGGAGACGGCCTTCATATACCAGGGCAAGTTGAGGGGCAAGCGTGT
ACGACCGGCACGTATTTACTACATTCGGGATCTGGACCAGAAGCTTTACC
GAATCACTGGGGGCGGTGGATCGGATAACTAG
back to top