mRNA_E-siliculosus-1a_M_contig92.17293.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17293.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17293.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 911 bits (2354), Expect = 0.000e+0
Identity = 526/544 (96.69%), Postives = 530/544 (97.43%), Query Frame = 1
Query:    1 MLRLSLPATPGCWYLSPLPMVSVWRTMFFSLFVVEALAFVPSSTSRIAFSAPPAATTSGQ-PAHERYSSRGIVARSRLPASRSVWGERMSVAGCSKDVPGDATACVVGRDVCTAVDNRNAGTGTAGTSGLTSGGEIGGDGRGGRRLLAIPPLLVAVATGRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGQYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            MLRLSLPATPGCWYLSPLPMVSVWRTMFFSLFVVEALAFVP    RIAFSAPPA+ TSGQ P HERYSSRGIVARS+LPASRSVWGERMS AGCSKDVPGDATACVVGRDVCTAVDNRNAGTGTAGT+GLT G EIGGDGR GRRLLAIPPLLVAVATGRSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQG+YQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWF RDSRDRDDDRGVEFSVVN RQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL
Sbjct:    1 MLRLSLPATPGCWYLSPLPMVSVWRTMFFSLFVVEALAFVP----RIAFSAPPASRTSGQQPTHERYSSRGIVARSQLPASRSVWGERMSAAGCSKDVPGDATACVVGRDVCTAVDNRNAGTGTAGTTGLTIGDEIGGDGRSGRRLLAIPPLLVAVATGRSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGRYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVN-RQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 3.000e-14
Identity = 76/249 (30.52%), Postives = 110/249 (44.18%), Query Frame = 1
Query:  895 RSGRG---GSSQTAVVTTLQLGLYC-DRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            RS RG             LQ+  YC DRQ     +   L  L++TAD +S  GL  L+++ CL  LRS +DWL         A+   S ++G  S+ V   +  +NR  ++ERSKWE E  S T                ++    TY VATL+V     +  P                        E + VN  + A++ L    D + E   +N++  EVLWTP DP+D +DR+D+   +PEL  L
Sbjct:   44 RSSRGIEQADEAAGAAYCLQVACYCGDRQNS---LYGKLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWL---------AARTTSETKGLFSNDV---ESQYNRIVVKERSKWESEQKSLTR---------------TSAGEATYMVATLVVLLRNGSELP------------------------EVTGVNELREAISQL--AADVSIE---DNLIAAEVLWTPEDPNDVMDRDDMFLNFPELVTL 233          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.210e-14
Identity = 77/244 (31.56%), Postives = 112/244 (45.90%), Query Frame = 1
Query:  907 GGSSQTAV-VTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSG--TYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            GGS    V V  LQ+ L    +  +G +LA L  +++ A+ +S  GLST ++EVCL L+R   DW+      + +A                RA+  FN  A+ ER+K ERETVS       S S      G   +  G  T AV T+++A  G   +  R +  R                     +NS  +   +L  +  +A    GENVL VE+LWTP +P +SLDR+ +   +PEL  L
Sbjct:  192 GGSLGRGVGVVKLQVALNASDRSSRG-ILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRS-----------AERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSD--GVRPEDLGKPTQAVVTIVLALKG--ESLKRFQLERS--------------------INSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A6P0QZA2_9CYAN (DUF1517 domain-containing protein (Fragment) n=1 Tax=Microcoleus sp. SIO2G3 TaxID=2607795 RepID=A0A6P0QZA2_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 4.940e-14
Identity = 75/244 (30.74%), Postives = 110/244 (45.08%), Query Frame = 1
Query:  916 SQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTA---PSWGGFSAQKS---GTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            S T  V  +Q+GL  + +  Q D    LD+L+QTAD ++  GL+ L+ E  L+LLR    W+   G  +    E               A+  FNR A+ ERSK+  ETV+N  ++   +STA   P+ GG  AQ S   G + V TL+VA  G                            ++   +NS   A   L  LG   ++     ++ VEVLWTP    D+L  +DL T + +LR +
Sbjct:   18 SPTVSVAKVQVGLLSEARSLQAD----LDRLAQTADTSTSAGLTQLLQETTLSLLRHPEYWVYAGGETQQTRLEA--------------AELQFNRLALAERSKFAEETVTNYNNQLRGASTAGTLPAGGGALAQASNEPGEFLVVTLLVAAQGK---------------------------LQLPAINSADDARRALSALGAVNSD----RLMAVEVLWTPQAEGDTLSSDDLLTNYTDLRRI 212          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 5.820e-13
Identity = 80/247 (32.39%), Postives = 110/247 (44.53%), Query Frame = 1
Query:  895 RSGRG--GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            RS RG   S Q      LQ+  YCD +  Q  +   L+K++ +AD +S  GL +L+++ CL +LRS +DWL         A+   S   G   + V  A   +NR  + ERSKWE E  +          TAP           TY VATL+V    L S  P     + G    D RD                 AL  L      AA    +N+L  EVLWTP D +D +DR++L   +PEL ++
Sbjct:   41 RSSRGIEASDQPGAALCLQVACYCDDR--QNSLFGKLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWL---------AARTESEIAGLLKNDVDAA---YNRLVVTERSKWEVEQKALKR-------TAPG--------QPTYMVATLVVL---LRSAQPLKPISQNG----DLRD-----------------ALQNL-----AAAVSVDDNLLAAEVLWTPEDTNDVMDRDELFLNFPELVSV 229          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A8G0W731_9CYAN (DUF1517 domain-containing protein n=7 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A8G0W731_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-12
Identity = 71/250 (28.40%), Postives = 110/250 (44.00%), Query Frame = 1
Query:  910 GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGG-------FSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            GS+    +T LQ+GL    +G Q +    L+++++ AD N+P+G + ++ E  L LLR    W+   GGT   K+ A+E +                 FNR ++ ERSK+  ET+SN  ++   S  A    G       F ++  G Y + TL+ A               G W              +F  +NS       L  +G       GE VL +EVLWTP    D+L  +DL  ++P+LR +
Sbjct:  123 GSNPNVSITRLQVGLLAQARGLQSE----LNQIAEKADTNTPQGRAEILQEASLALLRHPEYWVYAGGGTQQAKLNAAESQ-----------------FNRLSLAERSKFSEETLSNVNNQ-LKSVLAKELPGDIDNPTRFISEGPGEYIIVTLLAA-------------TLGKW--------------DFPQINSTNDLRQALRQVGSLP----GEQVLAIEVLWTPQAEGDTLTSDDLLAEYPDLRLV 319          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: UPI0016839E37 (DUF1517 domain-containing protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016839E37)

HSP 1 Score: 77.8 bits (190), Expect = 5.710e-12
Identity = 74/249 (29.72%), Postives = 110/249 (44.18%), Query Frame = 1
Query:  901 GRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPD--RGFS-SSTAPSWGGFSAQKS---GTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            G G  S    V  +Q+GL  + +  Q D    LD+++QTAD ++  GL+ ++ E  L LLR    W+   G  +    E               A+  FNR A+ ERSK+  ETV+N  +  RG S + T P+ GG  AQ S   G + V TL+VA  G                            ++   +N    A   L  LG  +++     ++ VEVLWTP    D+L  +DL T + +LR +
Sbjct:  126 GSGYDSPAVSVAKVQVGLLSEARSLQTD----LDRIAQTADTSTSAGLTQVLQETTLALLRHPEYWVYAGGETQQARLEA--------------AELQFNRLALAERSKFAEETVTNYNNQLRGTSPAGTLPAAGGALAQTSDSPGEFIVVTLLVAAQGK---------------------------LQLPAINGADDARRALSQLGAVSSD----KLMAVEVLWTPQAQGDTLSSDDLLTNYTDLRRI 325          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A7U3NLW2_9CYAN (DUF1517 domain-containing protein n=1 Tax=Anabaenopsis elenkinii CCIBt3563 TaxID=2779889 RepID=A0A7U3NLW2_9CYAN)

HSP 1 Score: 77.4 bits (189), Expect = 6.880e-12
Identity = 69/245 (28.16%), Postives = 110/245 (44.90%), Query Frame = 1
Query:  913 SSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDR---GFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            S+    VT LQ+GL    +G Q +    LD+++++AD NSP+G + ++ EV L LLR    W+   GGT  VK+ A+E +                 FNR ++ ERSK+  ET+SN  ++          P     S +  G Y + TL+ A  G                            +E   VNS      +L  +G  +    G+ +L +EVLWTP    D+L  +D+  ++P+L+ +
Sbjct:  124 SNPPVSVTRLQVGLLAQARGLQTE----LDQIAESADTNSPQGRAEVLQEVSLALLRHPEYWVYAGGGTQQVKLNAAESQ-----------------FNRLSLAERSKFSEETLSNVNNQLKAALKKEALPPADQLS-EAPGEYLIVTLLAATLGK---------------------------LEIPDVNSADDLRQVLRRIGGIS----GDQLLAIEVLWTPQAQGDTLTSDDILAEYPDLKLV 315          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: K9QD55_9NOSO (Uncharacterized protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=K9QD55_9NOSO)

HSP 1 Score: 77.4 bits (189), Expect = 7.510e-12
Identity = 69/251 (27.49%), Postives = 108/251 (43.03%), Query Frame = 1
Query:  913 SSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDR---GFSSSTAPSWGGFS------AQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            S+    VT LQ+GL    +    D+   L+K+++ AD NSP G + ++ E  L LLR    W+   GGT   K+ ++E +                 FNR A+ ERSK+  ET+SN  ++     +    P+ G         ++  G Y + TL+ A  G   TP                            +NS +S   +L  +G       GE +L +EVLWTP    D+L  +DL  ++P+L  +
Sbjct:  125 SNPNVSVTRLQVGLLAQAR----DLQPELNKIAEIADTNSPEGRAAVLQETSLALLRHPEYWVYAGGGTQQAKLSSAESQ-----------------FNRLALAERSKFSEETLSNVNNQLKAALAKEALPASGELDNPTKLISEGPGEYIIVTLLAATLGKLETP---------------------------AINSTESLRQVLRQIGSIP----GEQLLAIEVLWTPQAEGDTLSSDDLLAEYPDLMLV 323          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Match: A0A8J7B5L9_9CYAN (DUF1517 domain-containing protein n=1 Tax=Nodosilinea sp. LEGE 07298 TaxID=2777970 RepID=A0A8J7B5L9_9CYAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-11
Identity = 70/240 (29.17%), Postives = 111/240 (46.25%), Query Frame = 1
Query:  910 GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1629
            GS+    V  LQ+GL  + +G Q D    L++L+ TAD  + +GL+ L+ E  L LLR    W          ASE        K + +  A+++FNR A+  RS++  ET+SN  ++   +       G + Q  G Y +AT++VA  G    P                         +S  + RQ+    L  +G  +    GEN+L VEVLWTP    ++L  ++L  ++PEL+ +
Sbjct:   41 GSNPPVAVAKLQVGLLAEARGLQDD----LNRLATTADTGTSQGLAKLLQETTLALLRHPDYWA-------YAASED-------KQTRLLSAEQEFNRYALSARSRFSAETLSNVNNQLTQAEIQAKLPGDADQAPGEYILATVVVATQGKLDLPDI-----------------------YSSADLRQA----LSHIGAVS----GENLLAVEVLWTPQQSGETLSGDELIAQYPELKLI 231          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS6_ECTSI0.000e+096.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0QBA5_9EUKA3.000e-1430.52Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A835ZEJ7_9STRA3.210e-1431.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P0QZA2_9CYAN4.940e-1430.74DUF1517 domain-containing protein (Fragment) n=1 T... [more]
A0A0M0K0F2_9EUKA5.820e-1332.39Membrane protein n=1 Tax=Chrysochromulina tobinii ... [more]
A0A8G0W731_9CYAN2.210e-1228.40DUF1517 domain-containing protein n=7 Tax=Sphaeros... [more]
UPI0016839E375.710e-1229.72DUF1517 domain-containing protein n=1 Tax=Microcol... [more]
A0A7U3NLW2_9CYAN6.880e-1228.16DUF1517 domain-containing protein n=1 Tax=Anabaeno... [more]
K9QD55_9NOSO7.510e-1227.49Uncharacterized protein n=11 Tax=Cyanobacteria Tax... [more]
A0A8J7B5L9_9CYAN1.700e-1129.17DUF1517 domain-containing protein n=1 Tax=Nodosili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:514300..517234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1632
Model size1632
Exons4
Ec32 orthologEc-21_001970.1
Ec32 ortholog descriptionProtein of unknown function DUF1517
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2QUI9@2759,COG4371@1
EggNOG free text desc.Protein of unknown function (DUF1517)
Seed eggNOG ortholog2880.D8LDM2
Seed ortholog evalue6e-12
Seed ortholog score79.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17293.1prot_E-siliculosus-1a_M_contig92.17293.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 514300..517234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936465.0501547-CDS-E-siliculosus-1a_M_contig92:514299..5153611622936465.0501547-CDS-E-siliculosus-1a_M_contig92:514299..515361Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 514300..515361 +
1696251091.1650884-CDS-E-siliculosus-1a_M_contig92:514299..5153611696251091.1650884-CDS-E-siliculosus-1a_M_contig92:514299..515361Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 514300..515361 +
1622936465.0706527-CDS-E-siliculosus-1a_M_contig92:515696..5157721622936465.0706527-CDS-E-siliculosus-1a_M_contig92:515696..515772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 515697..515772 +
1696251091.1778867-CDS-E-siliculosus-1a_M_contig92:515696..5157721696251091.1778867-CDS-E-siliculosus-1a_M_contig92:515696..515772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 515697..515772 +
1622936465.0911453-CDS-E-siliculosus-1a_M_contig92:516074..5164021622936465.0911453-CDS-E-siliculosus-1a_M_contig92:516074..516402Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 516075..516402 +
1696251091.1963856-CDS-E-siliculosus-1a_M_contig92:516074..5164021696251091.1963856-CDS-E-siliculosus-1a_M_contig92:516074..516402Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 516075..516402 +
1622936465.1099422-CDS-E-siliculosus-1a_M_contig92:517068..5172341622936465.1099422-CDS-E-siliculosus-1a_M_contig92:517068..517234Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 517069..517234 +
1696251091.2077518-CDS-E-siliculosus-1a_M_contig92:517068..5172341696251091.2077518-CDS-E-siliculosus-1a_M_contig92:517068..517234Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 517069..517234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17293.1

>prot_E-siliculosus-1a_M_contig92.17293.1 ID=prot_E-siliculosus-1a_M_contig92.17293.1|Name=mRNA_E-siliculosus-1a_M_contig92.17293.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=544bp
MLRLSLPATPGCWYLSPLPMVSVWRTMFFSLFVVEALAFVPSSTSRIAFS
APPAATTSGQPAHERYSSRGIVARSRLPASRSVWGERMSVAGCSKDVPGD
ATACVVGRDVCTAVDNRNAGTGTAGTSGLTSGGEIGGDGRGGRRLLAIPP
LLVAVATGRSLAAAAAVTGGRIGGGGYSAPAAAERTPSAPPMQQQQQNQP
PQQQQQGQYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGD
APSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRS
GRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLST
LINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFN
RAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVA
WSGLNSTPPRAEPRRGGWFARDSRDRDDDRGVEFSVVNSRQSALTLLEWL
GDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL*
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mRNA from alignment at E-siliculosus-1a_M_contig92:514300..517234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17293.1 ID=mRNA_E-siliculosus-1a_M_contig92.17293.1|Name=mRNA_E-siliculosus-1a_M_contig92.17293.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2935bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:514300..517234+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTCAGACTCTCGCTACCCGCCACACCAGGGTGTTGGTACCTTTCCCC GCTGCCGATGGTGTCGGTCTGGAGAACCATGTTTTTTTCTCTCTTTGTTG TCGAGGCGTTAGCATTTGTTCCTAGCAGCACCTCCAGGATAGCATTTTCC GCCCCCCCTGCTGCTACAACAAGCGGGCAGCCGGCACATGAAAGGTACAG CTCCCGAGGGATCGTTGCTCGATCACGGCTGCCGGCAAGCAGAAGCGTGT GGGGCGAACGCATGAGTGTTGCTGGCTGTTCTAAAGATGTACCAGGAGAT GCAACAGCGTGCGTTGTGGGGCGTGATGTCTGCACCGCCGTCGACAACCG CAACGCCGGCACCGGTACGGCAGGAACATCGGGGTTGACGAGCGGCGGCG AGATCGGCGGAGATGGCCGAGGTGGGCGCCGTTTGCTGGCGATTCCCCCT CTACTGGTTGCTGTGGCTACGGGAAGAAGCCTCGCTGCTGCTGCTGCTGT GACTGGAGGCAGAATAGGTGGCGGAGGCTACTCCGCCCCGGCCGCCGCGG AGCGCACGCCAAGTGCCCCTCCGATGCAGCAGCAACAGCAGAACCAGCCG CCCCAGCAGCAGCAACAAGGGCAATACCAGCGGCCAAGGGCTGGCCGAGA CATCTACGGCTCCGAGGGAAGCCGGTTTCACATCAGGTTTGATGGTGGGC GAGGAGGGAGGCGATCAACCCGCGCCCGCTTCAACCCGTACGACGGCGAC GCGCCTTCCACGTCCATCACTCCCGGCGACGTCGCCATGATCGGCGGGGT TAGCGCCGCCGTGGCGGCCGTCCAGCGCTACAACAGAAAACGCTTTGTAG ACGAAGAAGGTTCCGGCCAGCGTCCCTCCGCGCCGCTGCCGCCGCGTTCT GGCCGGGGGGGGAGCTCGCAAACGGCCGTGGTGACGACGCTACAGTTGGG TTTGTATTGCGACCGCCAGGGGGGGCAGGGGGACGTGTTGGCTACGCTGG ACAAGCTCTCGCAGACGGCCGATGTTAACAGCCCGAGAGGGTTGTCCACC CTTATCAATGAGGTGAGGCAGACAGAGCAGCGCGCAGTGCGCCGGTCCTA AGAATGAAACTTAACGAGATATGCCGATGGTCATTTCGAGCCATTGAACT GGTTCGAACTCGTGCGCTCTTTTCCCATCTTGCACGTTTCCAGCACGTCC AACCCGGCGTTAATGCCGCCCTGTACCTGCATGTGTGCGTTGAAGAAGGC GTTTGTGTGTCATCGTGTGTGGTTTTAGTTGTAATACTACTGCAACTCCT GCTTGTGGCCCTTATCGCCGCCGTCATCGTTTGTTAGTTGTAGGCCTTGG GTTTCCCGCAACTTGAACGCGCATCAAACTTACCCGTATGCGCACAGGTG TGCCTGACGTTGCTTCGGTCGGGCAGAGATTGGCTTGGGGGCACTGGAAG CGTCAAAATGTACGCGTCGGAAGGTCAGTCGCCCAACAACAGCTTTGTTT GCTTGGTTAATGCATTGTTTCACCTCCCATGTGAGCGCTGCCGAACGATT GCTACAGTAGTTCGAATAGGTTGCCTTTCAAGTTCGCACTCTTGCCGGAC CATCCTGCTGTTCGCTGCTGGCAAGAAAGGATGCCCTCCGATTGCGCTAT TTCCAGCCCGTATAGAATGGCGTAGCGACCATCCTAGGCTTCTTGTCGGT GGCCCCACGGTAAACAACACAAGTCCAGGTCGAGGTGGTGAAATATTTCG CCCCGCCGTCACACCCACCCCCTAGGCCGTTCGAACAGCAGAGGGAAGAA GTCCTCCCCCGTGTCCAGGGCAAAGCGCGACTTCAACCGAGCCGCCATGC GCGAGCGATCAAAGTGGGAGCGGGAGACGGTGTCTAACACCCCCGACCGA GGGTTCAGCAGCAGCACCGCGCCTTCATGGGGGGGGTTCAGCGCCCAGAA GAGCGGAACGTACGCGGTTGCGACGCTGATCGTGGCGTGGTCGGGTTTGA ACAGCACCCCTCCCCGGGCTGAGCCGCGAAGAGGCGGCTGGTTCGCGCGG GATAGCCGCGATCGCGACGATGACCGAGGCGTGGAGTTCTCGGTGGTGAA CAGGTGCGACGGAAAAACGGTTCGTGTTTTGGTATCTTTGCATTTGCATG CCTGTGCTTGGGAAGATGCCCAAACAGTTCGTTTTTGGCAGATGTCACAT ACATATCAGAAGATGCACGTCACAGAACGGCTACGATGTACCAGTTCTTG AGCACTTTGAACCTTCTTTCACGTAACAGGTTGCAATTATGCTACATACT TCTAGGATGGGTTGTAGTTCTTGTGGTTTTCTTGGAGCGCGGTGAAGATG AAAACTGTGTGATTTCATCACGGCGCTAGGTCCACCTTTTGCTGAGTCGC GTTGGTGGTATTTGCAGACGTGGTTGTGTTTGTTTGGGCAATCACGTTCG GAATATCTATTTTCTCGCCCGAAGGCTGGAGGCCTTCGCCGATATAGTTG GTGAATGGAGAAATGAGGACCTTGTTGAGTCCGAGGTGGTTTCGGTCGGA GTAGACTTGCACGAGAACGCCGGCTCTTGTGGCTGGCCTTGCCGGCACGC CGCTGCGCAGGTATTTAGCGCAGTTTGAGGCTCGTGTCATCTTGCTTGGC GGGATTGATGCGTGAATTTCCGGCACGTGCTTGGCGCGTTGCATCGCCGT CCCGCAGCAACGACCAACCCAGCACCGGCGTCTTCTGTTTTGTGTGCGAT GCGCAACCAACCAACGAAGCAGGCAGTCCGCGCTGACCCTCCTGGAATGG CTAGGGGACGAGGCCGCGGAAGGGCGGGGAGAAAACGTGTTGGATGTAGA GGTGCTGTGGACTCCCGCGGACCCAGATGATTCTTTGGACCGGGAAGATT TGGACACCAAATGGCCGGAGCTAAGAGCACTCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:514300..517234+

>mRNA_E-siliculosus-1a_M_contig92.17293.1 ID=mRNA_E-siliculosus-1a_M_contig92.17293.1|Name=mRNA_E-siliculosus-1a_M_contig92.17293.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3264bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:514300..517234+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTCAGACTCTCGCTACCCGCCACACCAGGGTGTTGGTACCTTTCCCC
GCTGCCGATGGTGTCGGTCTGGAGAACCATGTTTTTTTCTCTCTTTGTTG
TCGAGGCGTTAGCATTTGTTCCTAGCAGCACCTCCAGGATAGCATTTTCC
GCCCCCCCTGCTGCTACAACAAGCGGGCAGCCGGCACATGAAAGGTACAG
CTCCCGAGGGATCGTTGCTCGATCACGGCTGCCGGCAAGCAGAAGCGTGT
GGGGCGAACGCATGAGTGTTGCTGGCTGTTCTAAAGATGTACCAGGAGAT
GCAACAGCGTGCGTTGTGGGGCGTGATGTCTGCACCGCCGTCGACAACCG
CAACGCCGGCACCGGTACGGCAGGAACATCGGGGTTGACGAGCGGCGGCG
AGATCGGCGGAGATGGCCGAGGTGGGCGCCGTTTGCTGGCGATTCCCCCT
CTACTGGTTGCTGTGGCTACGGGAAGAAGCCTCGCTGCTGCTGCTGCTGT
GACTGGAGGCAGAATAGGTGGCGGAGGCTACTCCGCCCCGGCCGCCGCGG
AGCGCACGCCAAGTGCCCCTCCGATGCAGCAGCAACAGCAGAACCAGCCG
CCCCAGCAGCAGCAACAAGGGCAATACCAGCGGCCAAGGGCTGGCCGAGA
CATCTACGGCTCCGAGGGAAGCCGGTTTCACATCAGGTTTGATGGTGGGC
GAGGAGGGAGGCGATCAACCCGCGCCCGCTTCAACCCGTACGACGGCGAC
GCGCCTTCCACGTCCATCACTCCCGGCGACGTCGCCATGATCGGCGGGGT
TAGCGCCGCCGTGGCGGCCGTCCAGCGCTACAACAGAAAACGCTTTGTAG
ACGAAGAAGGTTCCGGCCAGCGTCCCTCCGCGCCGCTGCCGCCGCGTTCT
GGCCGGGGGGGGAGCTCGCAAACGGCCGTGGTGACGACGCTACAGTTGGG
TTTGTATTGCGACCGCCAGGGGGGGCAGGGGGACGTGTTGGCTACGCTGG
ACAAGCTCTCGCAGACGGCCGATGTTAACAGCCCGAGAGGGTTGTCCACC
CTTATCAATGAGATGCTCAGACTCTCGCTACCCGCCACACCAGGGTGTTG
GTACCTTTCCCCGCTGCCGATGGTGTCGGTCTGGAGAACCATGTTTTTTT
CTCTCTTTGTTGTCGAGGCGTTAGCATTTGTTCCTAGCAGCACCTCCAGG
ATAGCATTTTCCGCCCCCCCTGCTGCTACAACAAGCGGGCAGCCGGCACA
TGAAAGGTACAGCTCCCGAGGGATCGTTGCTCGATCACGGCTGCCGGCAA
GCAGAAGCGTGTGGGGCGAACGCATGAGTGTTGCTGGCTGTTCTAAAGAT
GTACCAGGAGATGCAACAGCGTGCGTTGTGGGGCGTGATGTCTGCACCGC
CGTCGACAACCGCAACGCCGGCACCGGTACGGCAGGAACATCGGGGTTGA
CGAGCGGCGGCGAGATCGGCGGAGATGGCCGAGGTGGGCGCCGTTTGCTG
GCGATTCCCCCTCTACTGGTTGCTGTGGCTACGGGAAGAAGCCTCGCTGC
TGCTGCTGCTGTGACTGGAGGCAGAATAGGTGGCGGAGGCTACTCCGCCC
CGGCCGCCGCGGAGCGCACGCCAAGTGCCCCTCCGATGCAGCAGCAACAG
CAGAACCAGCCGCCCCAGCAGCAGCAACAAGGGCAATACCAGCGGCCAAG
GGCTGGCCGAGACATCTACGGCTCCGAGGGAAGCCGGTTTCACATCAGGT
TTGATGGTGGGCGAGGAGGGAGGCGATCAACCCGCGCCCGCTTCAACCCG
TACGACGGCGACGCGCCTTCCACGTCCATCACTCCCGGCGACGTCGCCAT
GATCGGCGGGGTTAGCGCCGCCGTGGCGGCCGTCCAGCGCTACAACAGAA
AACGCTTTGTAGACGAAGAAGGTTCCGGCCAGCGTCCCTCCGCGCCGCTG
CCGCCGCGTTCTGGCCGGGGGGGGAGCTCGCAAACGGCCGTGGTGACGAC
GCTACAGTTGGGTTTGTATTGCGACCGCCAGGGGGGGCAGGGGGACGTGT
TGGCTACGCTGGACAAGCTCTCGCAGACGGCCGATGTTAACAGCCCGAGA
GGGTTGTCCACCCTTATCAATGAGGTGTGCCTGACGTTGCTTCGGTCGGG
CAGAGATTGGCTTGGGGGCACTGGAAGCGTCAAAATGTACGCGTCGGAAG
GTGTGCCTGACGTTGCTTCGGTCGGGCAGAGATTGGCTTGGGGGCACTGG
AAGCGTCAAAATGTACGCGTCGGAAGGCCGTTCGAACAGCAGAGGGAAGA
AGTCCTCCCCCGTGTCCAGGGCAAAGCGCGACTTCAACCGAGCCGCCATG
CGCGAGCGATCAAAGTGGGAGCGGGAGACGGTGTCTAACACCCCCGACCG
AGGGTTCAGCAGCAGCACCGCGCCTTCATGGGGGGGGTTCAGCGCCCAGA
AGAGCGGAACGTACGCGGTTGCGACGCTGATCGTGGCGTGGTCGGGTTTG
AACAGCACCCCTCCCCGGGCTGAGCCGCGAAGAGGCGGCTGGTTCGCGCG
GGATAGCCGCGATCGCGACGATGACCGAGGCGTGGAGTTCTCGGTGGTGA
ACAGGCCGTTCGAACAGCAGAGGGAAGAAGTCCTCCCCCGTGTCCAGGGC
AAAGCGCGACTTCAACCGAGCCGCCATGCGCGAGCGATCAAAGTGGGAGC
GGGAGACGGTGTCTAACACCCCCGACCGAGGGTTCAGCAGCAGCACCGCG
CCTTCATGGGGGGGGTTCAGCGCCCAGAAGAGCGGAACGTACGCGGTTGC
GACGCTGATCGTGGCGTGGTCGGGTTTGAACAGCACCCCTCCCCGGGCTG
AGCCGCGAAGAGGCGGCTGGTTCGCGCGGGATAGCCGCGATCGCGACGAT
GACCGAGGCGTGGAGTTCTCGGTGGTGAACAGCAGGCAGTCCGCGCTGAC
CCTCCTGGAATGGCTAGGGGACGAGGCCGCGGAAGGGCGGGGAGAAAACG
TGTTGGATGTAGAGGTGCTGTGGACTCCCGCGGACCCAGATGATTCTTTG
GACCGGGAAGATTTGGACACCAAATGGCCGGAGCTAAGAGCACTCTGACA
GGCAGTCCGCGCTGACCCTCCTGGAATGGCTAGGGGACGAGGCCGCGGAA
GGGCGGGGAGAAAACGTGTTGGATGTAGAGGTGCTGTGGACTCCCGCGGA
CCCAGATGATTCTTTGGACCGGGAAGATTTGGACACCAAATGGCCGGAGC
TAAGAGCACTCTGA
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