mRNA_E-siliculosus-1a_M_contig92.17290.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17290.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17290.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17290.1 vs. uniprot
Match: D7FL14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL14_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 7.310e-44
Identity = 76/93 (81.72%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 MSLVLGYNR-----LEESTM-SRAPAAAGGRLTRRLQVGFDVDAYVLTFVLLLGPEMLLTFSLPPPNDAGVHHRLYINIQHNIYDEQLLKPVC 261
            MSLVLG+NR     LEESTM SRAPA  GGRLTRR QVGFDV AYVLTF L LGPEMLL FSLPPPNDAGVHHRLYIN+QHNIYD+QL KPVC
Sbjct:    1 MSLVLGHNRFDTVRLEESTMMSRAPAVVGGRLTRRPQVGFDVRAYVLTFGLFLGPEMLLNFSLPPPNDAGVHHRLYINVQHNIYDQQL-KPVC 92
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17290.1 vs. uniprot
Match: A0A6H5KAS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS9_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.930e-39
Identity = 69/92 (75.00%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 MSLVLGYNR-----LEESTMSRAPAAAGGRLTRRLQVGFDVDAYVLTFVLLLGPEMLLTFSLPPPNDAGVHHRLYINIQHNIYDEQLLKPVC 261
            MSLVLG+NR     LEESTMSRAPA  GGRLTRR QVGFDVDAY+LTFVL LG EMLLTFSLPPPNDAGVHHRLYI+     + + LLK VC
Sbjct:    1 MSLVLGHNRFDKVRLEESTMSRAPAVVGGRLTRRPQVGFDVDAYILTFVLFLGSEMLLTFSLPPPNDAGVHHRLYIHPYTTQHFDPLLKSVC 92
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL14_ECTSI7.310e-4481.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAS9_9PHAE1.930e-3975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:446140..446722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size264
Model size264
Exons2
Ec32 orthologEc-21_002010.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936464.5665443-CDS-E-siliculosus-1a_M_contig92:446139..4463101622936464.5665443-CDS-E-siliculosus-1a_M_contig92:446139..446310Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 446140..446310 -
1696251090.9011629-CDS-E-siliculosus-1a_M_contig92:446139..4463101696251090.9011629-CDS-E-siliculosus-1a_M_contig92:446139..446310Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 446140..446310 -
1622936464.580941-CDS-E-siliculosus-1a_M_contig92:446629..4467221622936464.580941-CDS-E-siliculosus-1a_M_contig92:446629..446722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 446630..446722 -
1696251090.9172666-CDS-E-siliculosus-1a_M_contig92:446629..4467221696251090.9172666-CDS-E-siliculosus-1a_M_contig92:446629..446722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 446630..446722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17290.1prot_E-siliculosus-1a_M_contig92.17290.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 446140..446722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17290.1

>prot_E-siliculosus-1a_M_contig92.17290.1 ID=prot_E-siliculosus-1a_M_contig92.17290.1|Name=mRNA_E-siliculosus-1a_M_contig92.17290.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=88bp
MSLVLGYNRLEESTMSRAPAAAGGRLTRRLQVGFDVDAYVLTFVLLLGPE
MLLTFSLPPPNDAGVHHRLYINIQHNIYDEQLLKPVC*
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mRNA from alignment at E-siliculosus-1a_M_contig92:446140..446722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17290.1 ID=mRNA_E-siliculosus-1a_M_contig92.17290.1|Name=mRNA_E-siliculosus-1a_M_contig92.17290.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=583bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:446140..446722- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCTTGGTGTTGGGGTACAACCGTCTGGAAGAGTCGACGATGTCTCG
TGCGCCAGCCGCCGCGGGTGGTCGCTTGACACGAAGACTACAGGTGAGTC
GTGTGTTGCTGAACTGTCGTGAAACAACTACCACTCACTGCGTTCGTACG
CGTGTTCGTGAGGGTAGATGAGAGCAGCCATGGAGATGTGTGAGAGGCGT
GGAACTCTGCATGCCCACCCCGCCAGCGGATGCCATGCCTTCTCTACTGT
CCCGGATCATTGGCAACAACGGTCTCCAATGGTGTCCCTATGTAGAATGG
ACTACAGCATCTAGAACTGCTTCATGAAGGAACACAGAGACAAGACCTTC
CCCTCAGCTTCGGGCTTTACCGCCATCGATTCCACGTTGTCGATGTTCTG
CAACGCCAACAGGTCGGGTTTGATGTCGACGCGTACGTCCTCACGTTTGT
GCTACTTCTCGGACCAGAGATGCTCCTGACCTTCAGCCTACCACCACCAA
ATGACGCCGGTGTGCATCATAGACTATACATCAATATACAACACAACATT
TACGATGAACAACTTTTGAAACCCGTTTGCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:446140..446722-

>mRNA_E-siliculosus-1a_M_contig92.17290.1 ID=mRNA_E-siliculosus-1a_M_contig92.17290.1|Name=mRNA_E-siliculosus-1a_M_contig92.17290.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:446140..446722- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCTTGGTGTTGGGGTACAACCGTCTGGAAGAGTCGACGATGTCTCG
TGCGCCAGCCGCCGCGGGTGGTCGCTTGACACGAAGACTACAGATGTCCT
TGGTGTTGGGGTACAACCGTCTGGAAGAGTCGACGATGTCTCGTGCGCCA
GCCGCCGCGGGTGGTCGCTTGACACGAAGACTACAGGTCGGGTTTGATGT
CGACGCGTACGTCCTCACGTTTGTGCTACTTCTCGGACCAGAGATGCTCC
TGACCTTCAGCCTACCACCACCAAATGACGCCGGTGTGCATCATAGACTA
TACATCAATATACAACACAACATTTACGATGAACAACTTTTGAAACCCGT
TTGCTAGGTCGGGTTTGATGTCGACGCGTACGTCCTCACGTTTGTGCTAC
TTCTCGGACCAGAGATGCTCCTGACCTTCAGCCTACCACCACCAAATGAC
GCCGGTGTGCATCATAGACTATACATCAATATACAACACAACATTTACGA
TGAACAACTTTTGAAACCCGTTTGCTAG
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