mRNA_E-siliculosus-1a_M_contig92.17287.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.150e-63 Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 1 MPIRSWFPNMVMAIISGPSRSRPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTPNKGPRSLPS 309
MPIRSWFPNMVMA+ISGPSRSRPAQASFKIQP+MTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTPNKGP SLPS
Sbjct: 1 MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTPNKGPPSLPS 103
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA) HSP 1 Score: 119 bits (299), Expect = 6.620e-31 Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 1
Query: 1 MPIRSWFPNMVMAIISGPSRSRPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVT 258
M ++ WFP+ M +++ P+R RP QA+F++ P+MTK EVKEYL K+Y VPVKKVMTQNF GKRKRI G RSI+ YKRP+FKKAIVT
Sbjct: 1 MGVKEWFPSFFMQLVTMPTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVMTQNFLGKRKRIQGSRSIISYKRPDFKKAIVT 86
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: A0A7S3QJC9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJC9_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.290e-22 Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 1 MPIRSWFPNMVMAI--ISGPSRSRPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
+ R W PNM + + +++ PA A+F+++P+MTK E+KEYLTKIYN+PVKKV T NF GKRKR MG++ IV YK +FKKA VTF
Sbjct: 8 LAFRVWMPNMPILLDGAKNATKTAPATATFRVKPKMTKHEIKEYLTKIYNLPVKKVNTANFAGKRKRAMGRQKIVEYKYKDFKKAFVTF 96
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: A0A6U3SB59_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB59_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.420e-21 Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 7 IRSWFPNMVMAIISG--PSRSRPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
+R W PNM + ++S + + A A+F++ P+MTK EVKE+LTKIYN+PV KV TQN+ GKRKR++GKR I YK +FKKAIVTF
Sbjct: 11 LRVWMPNMPIVLLSARNATETSAATATFRVLPKMTKHEVKEHLTKIYNLPVAKVNTQNYLGKRKRVVGKRRIAYYKNADFKKAIVTF 97
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: A0A7S4IBC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IBC0_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.760e-20 Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 10 RSWFPNMVMAIISGPS--RSRPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
R W P M + ++ S S+ A A F++ P+MTK E+KEYLTKIYN+PVKKV T N+ GKRKR++GKR I YK +FKKAIV F
Sbjct: 11 RMWMPTMPITLVKARSANESQSAMAVFRVMPKMTKHEIKEYLTKIYNLPVKKVNTMNYLGKRKRVIGKRGIAYYKYRDFKKAIVKF 96
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: A0A448YYR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYR3_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.860e-20 Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 10 RSWFPNMVMAIISGPSRS--RPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
R W PNM M ++S + + +PA+A+F++ PRMTK E+KEYLTKIY +PV+KV T N+ GKRK + G R ++ YK +FKKA+V+F
Sbjct: 10 RMWMPNMPMMLVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVQKVNTANYLGKRKLVRGSRQVIRYKYADFKKAVVSF 95
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: B8C4N9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4N9_THAPS) HSP 1 Score: 92.0 bits (227), Expect = 8.600e-20 Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 10 RSWFPNMVMAIISGP--SRSRPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFAS 267
+ W P++ + +++ + S PA A F+I P+MTK EV+EYLTKIY++PVK+V TQN+ GKR RI+GKR IV KRP++KKA V F S
Sbjct: 27 KMWMPSLPLVLLTATHATPSNPATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFVVFGS 114
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: A0A1E7FSR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSR6_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.380e-19 Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 10 RSWFPNMVMAIISGPSRS--RPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
R W PNM M ++S + + +PA+A+F++ PRMTK E+KEYLTKIY +PV++V T N+ GKRK + G +++ YK +FKKA+V+F
Sbjct: 13 RMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQVNTSNYMGKRKIVRGSSAVIRYKYADFKKAVVSF 98
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: B7FPJ8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ8_PHATC) HSP 1 Score: 90.5 bits (223), Expect = 3.510e-19 Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 10 RSWFPNMVMAIISGPSRSR--PAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
R W P+M + ++S S + PA A F+ PRMTK E+KEYLTKIY++PVKKV T N+EGKRKR++ I +K NFKKA+VTF
Sbjct: 16 RMWMPSMPLTMVSARSATANGPAFAIFRTVPRMTKHEIKEYLTKIYDLPVKKVNTMNYEGKRKRLISNSGIAYFKYKNFKKAVVTF 101
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Match: K0TJH6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJH6_THAOC) HSP 1 Score: 90.1 bits (222), Expect = 4.310e-19 Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 10 RSWFPNMVMAIISGPSRS--RPAQASFKIQPRMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTF 261
R W P+M + ++ + + PAQA+F++ P+MTK EVKEYLTKIY +PV KV TQN+ GKR R+MGK I KRP++KKA V+F
Sbjct: 28 RMWMPHMPLVLLDAQNATLDTPAQATFRVLPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDYKKAFVSF 113 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig92.17287.1 >prot_E-siliculosus-1a_M_contig92.17287.1 ID=prot_E-siliculosus-1a_M_contig92.17287.1|Name=mRNA_E-siliculosus-1a_M_contig92.17287.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=104bp MPIRSWFPNMVMAIISGPSRSRPAQASFKIQPRMTKWEVKEYLTKIYNVPback to top mRNA from alignment at E-siliculosus-1a_M_contig92:415994..418527- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig92.17287.1 ID=mRNA_E-siliculosus-1a_M_contig92.17287.1|Name=mRNA_E-siliculosus-1a_M_contig92.17287.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2534bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:415994..418527- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:415994..418527- >mRNA_E-siliculosus-1a_M_contig92.17287.1 ID=mRNA_E-siliculosus-1a_M_contig92.17287.1|Name=mRNA_E-siliculosus-1a_M_contig92.17287.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:415994..418527- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |