mRNA_E-siliculosus-1a_M_contig92.17285.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17285.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17285.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5K056_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K056_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 2.710e-142
Identity = 201/219 (91.78%), Postives = 208/219 (94.98%), Query Frame = 1
Query:  616 QNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTGEGGEFPLVTSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            QNIK PELADWF PGFSTTTETDEVCAAATAMASLQEYFNY+MCLRCGIPSV LMGTVEDWKLLREKIERMLEFEVLDNPEGKVME+WVGYLRKVCDGFVESAEHP+SAATV FWDKVFSHR+F SGVTFTTGWVS FSCFDKDG+FIGKNTG+GGEFPLVTSLCHNVVSCPVAIDDNGY YDATL TGQVAYRAERGAK G PT+ PRNDWCLAVAVK
Sbjct:  142 QNIKPPELADWFLPGFSTTTETDEVCAAATAMASLQEYFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPNSAATVDFWDKVFSHRHFVSGVTFTTGWVSAFSCFDKDGNFIGKNTGKGGEFPLVTSLCHNVVSCPVAIDDNGYGYDATLVTGQVAYRAERGAKAGYPTMCPRNDWCLAVAVK 360          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7FL08_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FL08_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 7.320e-139
Identity = 201/247 (81.38%), Postives = 218/247 (88.26%), Query Frame = 1
Query:  553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTGEGGEFPLV--TSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            + V G G L T     LIKDLLG+IRQNIKSPELADWFRPGFSTTTETDEVCAAA AMASLQ YF Y MCL CGIPSVTLMGTVEDWKLLREKIERMLEFEVL NPEGKVME+WVGYLRKVCDGFVESAEHPDSAATV FWDKV SH+  GSG+ +TTGWVS FSCFDKDG+FIGKN   GGEFPL+  ++LCHNV+SCPV IDDNG+EYDATLFTGQVA++AE+GA+GG PT+RPRNDWCLAVAVK
Sbjct:  152 LTVEGYGSLETADYAKLIKDLLGQIRQNIKSPELADWFRPGFSTTTETDEVCAAAAAMASLQAYFEYTMCLACGIPSVTLMGTVEDWKLLREKIERMLEFEVLGNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVLSHKNRGSGMNYTTGWVSAFSCFDKDGNFIGKNMSMGGEFPLIRDSALCHNVISCPVTIDDNGHEYDATLFTGQVAFKAEQGAEGGHPTVRPRNDWCLAVAVK 398          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5KCJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ8_9PHAE)

HSP 1 Score: 396 bits (1018), Expect = 3.010e-130
Identity = 201/245 (82.04%), Postives = 207/245 (84.49%), Query Frame = 1
Query:  553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTGEGGEFPLVTSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            + V G G L T     LIKDLLG+IRQNIKSPEL   F PGFSTTTETDEVCAAATAMASLQE FNY+MCLRCGIPSV LMGTVEDWKLLREKIERMLEFEVLDNPEGKVME+WVGYLRKVCDGFVESAEHPDSAATV FWDKV              GWVS FSCFDKDG+FIGKNTGEGGEFPLVTSL HNVVSCPVAIDDNGY YDATL TGQVAYRAERGAKG  PT+ PRNDWCLAVAVK
Sbjct:  133 LTVYGYGSLETADYARLIKDLLGQIRQNIKSPEL---FLPGFSTTTETDEVCAAATAMASLQECFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV--------------GWVSAFSCFDKDGNFIGKNTGEGGEFPLVTSLFHNVVSCPVAIDDNGYGYDATLLTGQVAYRAERGAKGAYPTMCPRNDWCLAVAVK 360          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7G2F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F2_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 2.150e-110
Identity = 170/263 (64.64%), Postives = 204/263 (77.57%), Query Frame = 1
Query:  553 VRVVGNGRL*TL-----IKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNT---GEGG-------------EFPLV--TSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            +RV G G L +L     I+++L KIR+NIK+PELADWF+PGF+TTT+TDEV AAATAMASLQ YF+Y++   CG+PSVTLMGTV+DWKLLR K+ER+L+FEV+DNPEG VMEVWVGYLRKVCDGFVESAEHPDS  T+ FWDKV SH   GSGV++ TGW+S F+CF+KDG F+G+NT   G G              E+PL+  + +CHNVVSCPV I+DNG EYD+TLF GQVA  A  G +GG PTIRPRNDWCLAV  K
Sbjct:  273 LRVEGGGNLFSLDYPALIREMLAKIRENIKTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKVVSHIGGGSGVSYITGWLSAFACFNKDGKFMGRNTEIPGTGSYRDTAVPDKSNECEYPLIETSQICHNVVSCPVKINDNGVEYDSTLFVGQVALEARNGGEGGYPTIRPRNDWCLAVPAK 535          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5KQX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX2_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 2.820e-103
Identity = 164/260 (63.08%), Postives = 190/260 (73.08%), Query Frame = 1
Query:  559 VVGNGRL*T------LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTG------------EGGEFPLV--TSLCHNVVSCPVAIDD--NGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            VV +G L T      +I+DLLG IRQNIKSPELADWFRPGFSTTTE DEVCAAATAMASLQ YF ++M   CGIPSVTL GTV DWKLLREK+ER+LEFEV  NPEG+VM++WVGYLRKVCDGFVESAEHP S  T+ FWD+V + +  GSGV + TGWVS F+CF+ DG F+GK T             +  EFP++    +CHNVVSCPV I D  +  EYD TLF GQ    AER    G PT+RPR+DWC+AVAVK
Sbjct:   68 VVSDGTLRTTADYPRMIRDLLGLIRQNIKSPELADWFRPGFSTTTERDEVCAAATAMASLQNYFEFRMRRGCGIPSVTLRGTVRDWKLLREKVERLLEFEVDGNPEGEVMQIWVGYLRKVCDGFVESAEHPGSPETLEFWDRVLTDKRGGSGVNYITGWVSAFTCFNSDGKFLGKRTKLRSFDENLKIVEKEVEFPIIGGRDICHNVVSCPVKIVDVSDRREYDGTLFAGQTVCEAERPGATGHPTVRPRSDWCMAVAVK 327          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D8LB67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB67_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.220e-102
Identity = 165/261 (63.22%), Postives = 189/261 (72.41%), Query Frame = 1
Query:  553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTG------------EGGEFPLVTS--LCHNVVSCPVAIDDN--GYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            +RV  +G L T     +I+DLLG IRQNIKSPE ADWFRPGFSTTTE DEVCAAATAMASLQ YF Y M  RCGIPSVTLMGTV DWKLLREKIER+LEFEV  NP+GKVM+ WVGYLRKVCDGFVESAEHP S  T+ FWD+V +H   GSGV++ TGWVS F+CF  D +F+GK T             +   FP++    +C +VVSCPV I D   G EYD TLF GQ    AER  + G PT+RPR+DWC+AVAVK
Sbjct:   49 LRVSSDGTLHTADYPRMIRDLLGLIRQNIKSPEFADWFRPGFSTTTEKDEVCAAATAMASLQAYFEYTMMYRCGIPSVTLMGTVGDWKLLREKIERLLEFEVDGNPQGKVMQTWVGYLRKVCDGFVESAEHPGSPETLEFWDRVLTHEPEGSGVSYITGWVSAFTCFGSDVNFLGKRTKFMSRDENRNIVEKDWGFPMIPDQEICIDVVSCPVKIIDATVGREYDGTLFAGQTVCEAERPGETGHPTVRPRSDWCMAVAVK 309          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5L0H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H3_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 4.940e-100
Identity = 160/264 (60.61%), Postives = 192/264 (72.73%), Query Frame = 1
Query:  553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTG---------------EGGE--FPLVTS--LCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
            +RV G G L +     LI+++LGKIRQN+K PELADWF+PGF+TT  TDEV AAATA+ SLQ YF+Y++ L CG+PSVTLMGTV+DWKLLR K+ER+L+FEV DNPE  VMEVWVGYLR+VCDGFVESAEHPDS  T+  WDKV  H   GSGV++ TGW+  F+CF+KDG F+G+NT                E GE  +PL+ +  +CHN VSCPV I+DNG EYD TLF GQVA  A  G +GG P  RPRN WCLAV  K
Sbjct:  222 LRVEGGGNLFSAETPVLIREMLGKIRQNVKMPELADWFKPGFTTTANTDEVAAAATAITSLQAYFSYEIHLECGLPSVTLMGTVQDWKLLRAKVERLLDFEVKDNPEEDVMEVWVGYLREVCDGFVESAEHPDSTETLQVWDKVVPHIGGGSGVSYITGWLPAFACFNKDGKFMGRNTNKARIGLNRGGNAVRDESGECKYPLIDTGEICHNAVSCPVKINDNGVEYDGTLFVGQVALEARNGGEGGYP--RPRNGWCLAVPAK 483          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7G2F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F1_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.960e-76
Identity = 120/172 (69.77%), Postives = 145/172 (84.30%), Query Frame = 1
Query:  559 VVGNGRL*TL-----IKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFI 1059
            V G G L +L     I+++L KIR+NIK+PELADWF+PGF+TTT+TDEV AAATAMASLQ YF+Y++   CG+PSVTLMGTV+DWKLLR K+ER+L+FEV+DNPEG VMEVWVGYLRKVCDGFVESAEHPDS  T+ FWDKV SH   GSGV++ TGW+S F+CF+KDG F+
Sbjct:   90 VEGGGNLFSLDYPALIREMLAKIRENIKTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKVVSHIGGGSGVSYITGWLSAFACFNKDGKFM 261          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D8LQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ89_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.360e-75
Identity = 124/179 (69.27%), Postives = 140/179 (78.21%), Query Frame = 1
Query:  538 ADSGWVRVVGNGRL*TLIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPE-GKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNT 1071
            A  G +R     R+   I+DLLG IRQNIKSPELADWFRPGFSTTTE DEVCAAATAMASLQ YF Y     CGIPSVTL GTV DWKLLREKIER+LEFEV  NPE  KVM++WVGYLRKVCDGFV+SAEHP S  T+ FWD+V + +  GSGV + TGWVS F+CF+ DG F+GK+T
Sbjct:   52 ASDGTLRTADYPRM---IRDLLGLIRQNIKSPELADWFRPGFSTTTERDEVCAAATAMASLQGYFEYSFMCGCGIPSVTLRGTVGDWKLLREKIERLLEFEVDGNPEEDKVMQIWVGYLRKVCDGFVKSAEHPGSPETLEFWDRVLTDKRQGSGVNYITGWVSAFTCFNSDGKFLGKHT 227          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7FL09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL09_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.560e-73
Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 1
Query:  553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKV 969
            + V G G L T     LIKDLLG+IRQNIKSPELADWFRPGFST+TETDEVCAAATAMASLQ YF + MCL C IPSVTLMGTVEDW+LLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATV FW KV
Sbjct:   49 LTVEGYGSLETADYAKLIKDLLGQIRQNIKSPELADWFRPGFSTSTETDEVCAAATAMASLQAYFEHTMCLACSIPSVTLMGTVEDWELLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVDFWAKV 192          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K056_9PHAE2.710e-14291.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL08_ECTSI7.320e-13981.38Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KCJ8_9PHAE3.010e-13082.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2F2_ECTSI2.150e-11064.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQX2_9PHAE2.820e-10363.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB67_ECTSI1.220e-10263.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0H3_9PHAE4.940e-10060.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2F1_ECTSI1.960e-7669.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQ89_ECTSI3.360e-7569.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL09_ECTSI1.560e-7384.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:401671..406358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size567
Model size1934
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs29GQM@1,2RPX4@2759
EggNOG free text desc.Domain of unknown function (DUF4419)
Seed eggNOG ortholog2880.D7FL10
Seed ortholog evalue5.4e-93
Seed ortholog score347.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17285.1prot_E-siliculosus-1a_M_contig92.17285.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 402330..404134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936463.9594064-UTR-E-siliculosus-1a_M_contig92:401670..4023291622936463.9594064-UTR-E-siliculosus-1a_M_contig92:401670..402329Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 401671..402329 -
1696251090.5167515-UTR-E-siliculosus-1a_M_contig92:401670..4023291696251090.5167515-UTR-E-siliculosus-1a_M_contig92:401670..402329Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 401671..402329 -
1622936464.0508032-UTR-E-siliculosus-1a_M_contig92:404134..4045541622936464.0508032-UTR-E-siliculosus-1a_M_contig92:404134..404554Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 404135..404554 -
1696251090.5690506-UTR-E-siliculosus-1a_M_contig92:404134..4045541696251090.5690506-UTR-E-siliculosus-1a_M_contig92:404134..404554Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 404135..404554 -
1622936464.0659254-UTR-E-siliculosus-1a_M_contig92:406070..4063581622936464.0659254-UTR-E-siliculosus-1a_M_contig92:406070..406358Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 406071..406358 -
1696251090.580223-UTR-E-siliculosus-1a_M_contig92:406070..4063581696251090.580223-UTR-E-siliculosus-1a_M_contig92:406070..406358Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 406071..406358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936463.972359-CDS-E-siliculosus-1a_M_contig92:402329..4026381622936463.972359-CDS-E-siliculosus-1a_M_contig92:402329..402638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 402330..402638 -
1696251090.5461822-CDS-E-siliculosus-1a_M_contig92:402329..4026381696251090.5461822-CDS-E-siliculosus-1a_M_contig92:402329..402638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 402330..402638 -
1622936464.0375335-CDS-E-siliculosus-1a_M_contig92:403876..4041341622936464.0375335-CDS-E-siliculosus-1a_M_contig92:403876..404134Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 403877..404134 -
1696251090.5582032-CDS-E-siliculosus-1a_M_contig92:403876..4041341696251090.5582032-CDS-E-siliculosus-1a_M_contig92:403876..404134Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 403877..404134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17285.1

>prot_E-siliculosus-1a_M_contig92.17285.1 ID=prot_E-siliculosus-1a_M_contig92.17285.1|Name=mRNA_E-siliculosus-1a_M_contig92.17285.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=189bp
MASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPE
GKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFT
TGWVSTFSCFDKDGSFIGKNTGEGGEFPLVTSLCHNVVSCPVAIDDNGYE
YDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK*
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mRNA from alignment at E-siliculosus-1a_M_contig92:401671..406358-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17285.1 ID=mRNA_E-siliculosus-1a_M_contig92.17285.1|Name=mRNA_E-siliculosus-1a_M_contig92.17285.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:401671..406358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCGACAGCTCATTCTCCCACTACTGCCTCCTACTTTTTGTCTACAGGCG CACGCGTCATCATCAACCTGACCCCCAAGAAAATGGCAACCTCAGCTCCC GCGTCCGGAAGGGGTGTTGAAGTGAAGCAAGTGAAAATCTCGCCGGCAAG TTCAAACCCCAAGCTGGAGTTTGTCGACAATTTCGAGCAGGCCTTCAAGC CCTCATCATCACTGAGCGGCGCTTTCGAGCACCACGCCGCGTACAAAGCA ATTTTCAGAACGGAGGAGGACGGCACACAGTTTAGCAGGTGCACACGTCT TCGACTTTCTCCTCTGTGTGTATCGTGTATCGTGTGCAGTAGGAGAGCTT GTTGTCTTGCCCGCATTCTGTAGACTGTTGTATGTACATTAAACAGCATC AATCAACAATAGCAGGGCAACCATGCATTCATGTTTCTCTTCACACGTGG GGAAGAGAGAGAAACCACACTGGCAAACATGTTTCCTGCAGACGCCCTCT GCGCCTGTCCTACCGCCATGTCTCTGTCCATCAGTAGAACTCTCTCTCTC TCGCTTCCCAAAAGAAAACAACCCAGGGTTTCTCTATCTACCGGTGTGGG GAACTCTTCCTACTGCTGTGCGGAACATTTCAGACGACCGAGTCCCCAAA TGCCATTTACTCTTCCCAATTCGACGTCGTCATGAGAGTCTTGCTGTACG GTGGAACATGATATTTTCTTTATCGTTACCCCACACCGTGTTCCCCGAGG GCGGCTGTCTCACCGCTCTCTTTTCCTTATCGCGTAGTATGCGAGACACC CGTTGCGAATCCTCCACATCGTTTACTGTGTATCTTGTACGCATCTGATT TCCACGTCCCTGCCCCTCTGGATTACTCGTTCCGAAACCTCCCCCCCGGC CGCCAGGGCGGAGCCCCCCCCAATCCGAAGGGAGTGCAGTGCGAAGTGTT TTGGTTCCCGCCCCGTCTTCTTGACTCCCTCTCTAAATACTCGCAGATCG TGGCAATACCTCAGCGCTTTGACTTCACGACCGCTATACGGTACAAAGAT AGTGGCGCGTCATCGGGCAGAGTCGCATGGCAAGGCATCAATTCCACCAT CATCAGAGCCACGGCTCCGCCGTCTTCTCTGTACCCCGACAGCGTGCCAC TAACGTCGCCCCATGTATGAGCCCTTACTTCTCCGGTCTGCTCCTGGTCC CCCTTATGTCCTATGAAATGCACCTCCATCTGATCTGCTTGCCGGCAGTG AGCGAACTCCAACTAGGTGTCCCCGTAGAAGAACGCTACATCCTTCCTCG TGAGACAGTGTACGGGATGGGCTACCCCTGAACTGTTCCTGCAAACGTCC CGTCTGGTTGCAACTTCTTGGCCTCCCAACCTGGCCAATCCTTTACATCC TCTCTCTGAGTTCACCTGCTACTGTAGTGTAATTGTGCTATTCCACGCTG TCCAACGGGCCGTGTCGTTACACGTGAACTCTTCGAGAAAGTGACCACTC CAGAGAACTCTCCCAATCTGATACCCCGAAATACAGGAACAAAAAAACTT CAGGCAGATTCGACGGTTTCAATAAACGGTAGTCTGCCCCGGCTATATTT GCCTCACCAAACTTGCTATTTACCAGTTACCATGTTTTCGCGTGCATGGT TGGCCTTCCTCTGACTTCCTCCTCGTTTGTCCTGCTACATTTTTCCATAT TCTTTCTCTCTCTCTAATCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCT CTCTTTCTCTCTCTATATCTCTCTCTCTCTCTGCCTCACCTCTCCCTCAC ATAGCCGGGGGCCCGACACGACGAAACTTCCTGGAAAAATCGTTGCAACA TCCCGCACGACACAACAAACAGGGTTGTCACGCGCGCCCAAGGGCCTCAT TTCCGCCATTATGACCGCCTACAACACTCACTGCGCTCTAGTAATCAGCC CGGACGACGTGTGGTTGACCATTCTCTCCCAGTTCTGTGCATAAGTCAAC AAGAACGCCGGGGGTTTGCGCGACAGGGTGGTTGAGCATGAGGGCAAGAA GGAGCTGATAGTGGATGGGTACGGGTCGTTGGAAACGGCCGACTATGAAC GCTGATCAAGGATCTCTTAGGAAAAATCAGGCAGAACATCAAGTCCCCCG AGCTGGCCGACTGGTTCCGCCCTGGGTTCTCTACTACTACGGAGACAGAC GAGGTTTGCGCGGCGGCAACAGCTATGGCGAGCCTCCAGGAGTACTTCAA CTATAAAATGTGCCTCAGGTGCGGCATTCCGTCGGTGACCCTGATGGGCA CAGTCGAGGACTGGAAGCTGCTGCGGGAGAAGATCGAGCGTATGCTTGAG TTCGAGGTGCTGGACAACCCGGAGGGCAAGGTCATGGAGGTGTGGGTGGG ATACCTGAGGAAGGTGTGCGACGGGTTCGTGGAGTCGGCGGAGCACCCGG ACAGCGCGGCGACGGTTGGCTTCTGGGACAAGGTACATATGTGTCTTTAC GCTAAAGTAGAGTGGGTGCACAACACACTTCACGCGCGTGATGAAACGTC GTTTATCGTTCTCTTTCGAACTGCCTTGATTTGCACTTTCTGTGGCCTAA AGAGGGATACTTGTTCCCCGTGCCACACGTTCCACACGGCTGATAGCCTC CGCCGTGTCCTAATGTCTCCTCTTCCAAAACACACGCGAAATCTCCCTCC GAAAACGACCAGACGGGACGAAACTGTTGTACAATATGGCAGTCTCGTTC TGAGCCTCTCAATGGTGCACACAAACATTCAGAAAACACCCCGTGCTGTA GGCCATAAACACTACATGGCAAAGCTGGCTCCAACTCCGAGTCACAGAAA TATTTGGGGGGGGGCGTCTCCAACAAGGGAGCCCTCCAGCCGCAACGTTT CCCGTATACGCCGCCTTCGAGAGAAACGGGGTGGGTGGGCTGGAGAAAAC TGCCCCCGAACTTCAACGTTGCTCGCTGCTGATCTCCTATGCCGCGCGAC CCTCAACAGTGGGCTGCGTGCTACACACTGTGTATTCCTCTCCTCAGCAC GTTGCCCTTGGGTCCGGTGGACACGTGTCTGTCAAACTCTTGCTGCAGGA GCAGCGAGGCAGTAAAATGAGAACGCCTGTGAGACTTTTCTCTTTTTGGG ACCCCAGAAAACCGAACGGAGACATCCCAACCAACAAGCCTCCCTGGCGG ACAACAAGAACCCAAAACTACTCGCAGACCTGGGAGATGTTCCGAATTTT CCGTTCACAACAAACTCCAGTTTATTTGGTATTCGTGGACAAACGTACTT TATACTTCTGTAGGTGGGTATGCCGCGATGAAATTATCTTTTTGGCAGGT CAAACTGGTTCGCCCTCAGTCCACAAGAGACGCTCGGCAAACATGCCAAA CGGGTCCGGAGACAACAAACGTCGAAACCGGGTCGTGGCTAACTTTCTTG TTTCATCACCTCCGTTGAACACAGGTTGCTATGCAGAGCTGTGTTTCTCA ACCCGATATTGCTAGTGTTCTCGAAACTTTGAGGGTGGTTTCTCGACGGA ATTTCAACTGCGGTGCTTGTTGACTGCAAGTCAATATTATTCTGAGAATC ATATTGTAGCAGTCCGATGACTCGTGTTTAGTGCCAAACGCACCTGGACT ACATTACCCACACTGCGTTGGCATTCTCTCAAAACCACAGTCGTGAACGT GCTTCGGTTGTTTGTTGCAGGTCTTCTCTCACCGATATTTTGGCTCGGGA GTAACGTTCACGACAGGCTGGGTGTCCACCTTCTCGTGCTTCGACAAAGA CGGCAGCTTCATCGGGAAGAACACAGGGGAGGGCGGAGAGTTCCCACTCG TTACTTCCCTTTGCCACAACGTTGTTTCGTGCCCTGTAGCCATCGACGAC AATGGATATGAGTATGACGCCACCTTGTTTACAGGACAGGTGGCCTATAG GGCTGAACGAGGTGCCAAGGGGGGATCTCCGACCATCCGTCCGCGCAACG ACTGGTGTCTGGCCGTGGCGGTGAAATGAATCTGGCTGCTGTTTCGTGGA AGATGTCGGCGGTAAAGAAGCACTAATCGATTTTTAGGGATTTGGGAATA ATTGTTGCCACGCGTATGTGAGCAACATGTCTCCTGGTTTACTTTGGATT GTCAGGAGTTCGCTCTGTCAAGAGGAGCAAATAACCCTCCACATGTCGAT GGGAAGCACCTACTTTTCAGTAGGAAGAGGATGGTCTCCAGGTGGAAAAT ATGTGCTGATGCATGAGTCCGCATCGTAATGTCCCAGAGTAGTTAACCAA GACCGAAAGGTAGGTGGTAAACTGTAGGTAGCGACGGTTGCCTGTTGCTG AGAAGTTTTGAGACTGGCACAGGGAGAATGAGCATGGTCTAGTGCTTGTG TCCCGAGCTCATATCTGTACTCTGGAATGTGCGGCTCTGGTTGGGGTGAT GAAAACACCAGTCAATGGAGGGTGGCTCGTATTCCGTGTTCATGTATTGA TATATTCATCGAGTGTCCAGTGTGGTCGCCACCAGTGCCGAGCATGACCC GTTCATACTGTACCGAGGTATCCGTATTTCGCTTTACGGTGATTAGTACA CCTTCACTACAGTGCCGGCCCGCTGGTAAGAAACAACCTCGTAAGCATTT GGGCCTCACAAGACTTGTGCATATGTGAGAAGAAGGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:401671..406358-

>mRNA_E-siliculosus-1a_M_contig92.17285.1 ID=mRNA_E-siliculosus-1a_M_contig92.17285.1|Name=mRNA_E-siliculosus-1a_M_contig92.17285.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:401671..406358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGAGCCTCCAGGAGTACTTCAACTATAAAATGTGCCTCAGGTGCGG
CATTCCGTCGGTGACCCTGATGGGCACAGTCGAGGACTGGAAGCTGCTGC
GGGAGAAGATCGAGCGTATGCTTGAGTTCGAGGTGCTGGACAACCCGGAG
GGCAAGGTCATGGAGGTGTGGGTGGGATACCTGAGGAAGGTGTGCGACGG
GTTCGTGGAGTCGGCGGAGCACCCGGACAGCGCGGCGACGGTTGGCTTCT
GGGACAAGATGGCGAGCCTCCAGGAGTACTTCAACTATAAAATGTGCCTC
AGGTGCGGCATTCCGTCGGTGACCCTGATGGGCACAGTCGAGGACTGGAA
GCTGCTGCGGGAGAAGATCGAGCGTATGCTTGAGTTCGAGGTGCTGGACA
ACCCGGAGGGCAAGGTCATGGAGGTGTGGGTGGGATACCTGAGGAAGGTG
TGCGACGGGTTCGTGGAGTCGGCGGAGCACCCGGACAGCGCGGCGACGGT
TGGCTTCTGGGACAAGGTCTTCTCTCACCGATATTTTGGCTCGGGAGTAA
CGTTCACGACAGGCTGGGTGTCCACCTTCTCGTGCTTCGACAAAGACGGC
AGCTTCATCGGGAAGAACACAGGGGAGGGCGGAGAGTTCCCACTCGTTAC
TTCCCTTTGCCACAACGTTGTTTCGTGCCCTGTAGCCATCGACGACAATG
GATATGAGTATGACGCCACCTTGTTTACAGGACAGGTGGCCTATAGGGCT
GAACGAGGTGCCAAGGGGGGATCTCCGACCATCCGTCCGCGCAACGACTG
GTGTCTGGCCGTGGCGGTGAAATGAGTCTTCTCTCACCGATATTTTGGCT
CGGGAGTAACGTTCACGACAGGCTGGGTGTCCACCTTCTCGTGCTTCGAC
AAAGACGGCAGCTTCATCGGGAAGAACACAGGGGAGGGCGGAGAGTTCCC
ACTCGTTACTTCCCTTTGCCACAACGTTGTTTCGTGCCCTGTAGCCATCG
ACGACAATGGATATGAGTATGACGCCACCTTGTTTACAGGACAGGTGGCC
TATAGGGCTGAACGAGGTGCCAAGGGGGGATCTCCGACCATCCGTCCGCG
CAACGACTGGTGTCTGGCCGTGGCGGTGAAATGA
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