mRNA_E-siliculosus-1a_M_contig92.17285.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5K056_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K056_9PHAE) HSP 1 Score: 427 bits (1098), Expect = 2.710e-142 Identity = 201/219 (91.78%), Postives = 208/219 (94.98%), Query Frame = 1
Query: 616 QNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTGEGGEFPLVTSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
QNIK PELADWF PGFSTTTETDEVCAAATAMASLQEYFNY+MCLRCGIPSV LMGTVEDWKLLREKIERMLEFEVLDNPEGKVME+WVGYLRKVCDGFVESAEHP+SAATV FWDKVFSHR+F SGVTFTTGWVS FSCFDKDG+FIGKNTG+GGEFPLVTSLCHNVVSCPVAIDDNGY YDATL TGQVAYRAERGAK G PT+ PRNDWCLAVAVK
Sbjct: 142 QNIKPPELADWFLPGFSTTTETDEVCAAATAMASLQEYFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPNSAATVDFWDKVFSHRHFVSGVTFTTGWVSAFSCFDKDGNFIGKNTGKGGEFPLVTSLCHNVVSCPVAIDDNGYGYDATLVTGQVAYRAERGAKAGYPTMCPRNDWCLAVAVK 360
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7FL08_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FL08_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 7.320e-139 Identity = 201/247 (81.38%), Postives = 218/247 (88.26%), Query Frame = 1
Query: 553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTGEGGEFPLV--TSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
+ V G G L T LIKDLLG+IRQNIKSPELADWFRPGFSTTTETDEVCAAA AMASLQ YF Y MCL CGIPSVTLMGTVEDWKLLREKIERMLEFEVL NPEGKVME+WVGYLRKVCDGFVESAEHPDSAATV FWDKV SH+ GSG+ +TTGWVS FSCFDKDG+FIGKN GGEFPL+ ++LCHNV+SCPV IDDNG+EYDATLFTGQVA++AE+GA+GG PT+RPRNDWCLAVAVK
Sbjct: 152 LTVEGYGSLETADYAKLIKDLLGQIRQNIKSPELADWFRPGFSTTTETDEVCAAAAAMASLQAYFEYTMCLACGIPSVTLMGTVEDWKLLREKIERMLEFEVLGNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVLSHKNRGSGMNYTTGWVSAFSCFDKDGNFIGKNMSMGGEFPLIRDSALCHNVISCPVTIDDNGHEYDATLFTGQVAFKAEQGAEGGHPTVRPRNDWCLAVAVK 398
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5KCJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ8_9PHAE) HSP 1 Score: 396 bits (1018), Expect = 3.010e-130 Identity = 201/245 (82.04%), Postives = 207/245 (84.49%), Query Frame = 1
Query: 553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTGEGGEFPLVTSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
+ V G G L T LIKDLLG+IRQNIKSPEL F PGFSTTTETDEVCAAATAMASLQE FNY+MCLRCGIPSV LMGTVEDWKLLREKIERMLEFEVLDNPEGKVME+WVGYLRKVCDGFVESAEHPDSAATV FWDKV GWVS FSCFDKDG+FIGKNTGEGGEFPLVTSL HNVVSCPVAIDDNGY YDATL TGQVAYRAERGAKG PT+ PRNDWCLAVAVK
Sbjct: 133 LTVYGYGSLETADYARLIKDLLGQIRQNIKSPEL---FLPGFSTTTETDEVCAAATAMASLQECFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV--------------GWVSAFSCFDKDGNFIGKNTGEGGEFPLVTSLFHNVVSCPVAIDDNGYGYDATLLTGQVAYRAERGAKGAYPTMCPRNDWCLAVAVK 360
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7G2F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F2_ECTSI) HSP 1 Score: 352 bits (903), Expect = 2.150e-110 Identity = 170/263 (64.64%), Postives = 204/263 (77.57%), Query Frame = 1
Query: 553 VRVVGNGRL*TL-----IKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNT---GEGG-------------EFPLV--TSLCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
+RV G G L +L I+++L KIR+NIK+PELADWF+PGF+TTT+TDEV AAATAMASLQ YF+Y++ CG+PSVTLMGTV+DWKLLR K+ER+L+FEV+DNPEG VMEVWVGYLRKVCDGFVESAEHPDS T+ FWDKV SH GSGV++ TGW+S F+CF+KDG F+G+NT G G E+PL+ + +CHNVVSCPV I+DNG EYD+TLF GQVA A G +GG PTIRPRNDWCLAV K
Sbjct: 273 LRVEGGGNLFSLDYPALIREMLAKIRENIKTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKVVSHIGGGSGVSYITGWLSAFACFNKDGKFMGRNTEIPGTGSYRDTAVPDKSNECEYPLIETSQICHNVVSCPVKINDNGVEYDSTLFVGQVALEARNGGEGGYPTIRPRNDWCLAVPAK 535
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5KQX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX2_9PHAE) HSP 1 Score: 326 bits (835), Expect = 2.820e-103 Identity = 164/260 (63.08%), Postives = 190/260 (73.08%), Query Frame = 1
Query: 559 VVGNGRL*T------LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTG------------EGGEFPLV--TSLCHNVVSCPVAIDD--NGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
VV +G L T +I+DLLG IRQNIKSPELADWFRPGFSTTTE DEVCAAATAMASLQ YF ++M CGIPSVTL GTV DWKLLREK+ER+LEFEV NPEG+VM++WVGYLRKVCDGFVESAEHP S T+ FWD+V + + GSGV + TGWVS F+CF+ DG F+GK T + EFP++ +CHNVVSCPV I D + EYD TLF GQ AER G PT+RPR+DWC+AVAVK
Sbjct: 68 VVSDGTLRTTADYPRMIRDLLGLIRQNIKSPELADWFRPGFSTTTERDEVCAAATAMASLQNYFEFRMRRGCGIPSVTLRGTVRDWKLLREKVERLLEFEVDGNPEGEVMQIWVGYLRKVCDGFVESAEHPGSPETLEFWDRVLTDKRGGSGVNYITGWVSAFTCFNSDGKFLGKRTKLRSFDENLKIVEKEVEFPIIGGRDICHNVVSCPVKIVDVSDRREYDGTLFAGQTVCEAERPGATGHPTVRPRSDWCMAVAVK 327
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D8LB67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB67_ECTSI) HSP 1 Score: 323 bits (829), Expect = 1.220e-102 Identity = 165/261 (63.22%), Postives = 189/261 (72.41%), Query Frame = 1
Query: 553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTG------------EGGEFPLVTS--LCHNVVSCPVAIDDN--GYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
+RV +G L T +I+DLLG IRQNIKSPE ADWFRPGFSTTTE DEVCAAATAMASLQ YF Y M RCGIPSVTLMGTV DWKLLREKIER+LEFEV NP+GKVM+ WVGYLRKVCDGFVESAEHP S T+ FWD+V +H GSGV++ TGWVS F+CF D +F+GK T + FP++ +C +VVSCPV I D G EYD TLF GQ AER + G PT+RPR+DWC+AVAVK
Sbjct: 49 LRVSSDGTLHTADYPRMIRDLLGLIRQNIKSPEFADWFRPGFSTTTEKDEVCAAATAMASLQAYFEYTMMYRCGIPSVTLMGTVGDWKLLREKIERLLEFEVDGNPQGKVMQTWVGYLRKVCDGFVESAEHPGSPETLEFWDRVLTHEPEGSGVSYITGWVSAFTCFGSDVNFLGKRTKFMSRDENRNIVEKDWGFPMIPDQEICIDVVSCPVKIIDATVGREYDGTLFAGQTVCEAERPGETGHPTVRPRSDWCMAVAVK 309
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: A0A6H5L0H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H3_9PHAE) HSP 1 Score: 324 bits (830), Expect = 4.940e-100 Identity = 160/264 (60.61%), Postives = 192/264 (72.73%), Query Frame = 1
Query: 553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNTG---------------EGGE--FPLVTS--LCHNVVSCPVAIDDNGYEYDATLFTGQVAYRAERGAKGGSPTIRPRNDWCLAVAVK 1272
+RV G G L + LI+++LGKIRQN+K PELADWF+PGF+TT TDEV AAATA+ SLQ YF+Y++ L CG+PSVTLMGTV+DWKLLR K+ER+L+FEV DNPE VMEVWVGYLR+VCDGFVESAEHPDS T+ WDKV H GSGV++ TGW+ F+CF+KDG F+G+NT E GE +PL+ + +CHN VSCPV I+DNG EYD TLF GQVA A G +GG P RPRN WCLAV K
Sbjct: 222 LRVEGGGNLFSAETPVLIREMLGKIRQNVKMPELADWFKPGFTTTANTDEVAAAATAITSLQAYFSYEIHLECGLPSVTLMGTVQDWKLLRAKVERLLDFEVKDNPEEDVMEVWVGYLREVCDGFVESAEHPDSTETLQVWDKVVPHIGGGSGVSYITGWLPAFACFNKDGKFMGRNTNKARIGLNRGGNAVRDESGECKYPLIDTGEICHNAVSCPVKINDNGVEYDGTLFVGQVALEARNGGEGGYP--RPRNGWCLAVPAK 483
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7G2F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F1_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.960e-76 Identity = 120/172 (69.77%), Postives = 145/172 (84.30%), Query Frame = 1
Query: 559 VVGNGRL*TL-----IKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFI 1059
V G G L +L I+++L KIR+NIK+PELADWF+PGF+TTT+TDEV AAATAMASLQ YF+Y++ CG+PSVTLMGTV+DWKLLR K+ER+L+FEV+DNPEG VMEVWVGYLRKVCDGFVESAEHPDS T+ FWDKV SH GSGV++ TGW+S F+CF+KDG F+
Sbjct: 90 VEGGGNLFSLDYPALIREMLAKIRENIKTPELADWFKPGFTTTTDTDEVAAAATAMASLQAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKVVSHIGGGSGVSYITGWLSAFACFNKDGKFM 261
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D8LQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ89_ECTSI) HSP 1 Score: 249 bits (637), Expect = 3.360e-75 Identity = 124/179 (69.27%), Postives = 140/179 (78.21%), Query Frame = 1
Query: 538 ADSGWVRVVGNGRL*TLIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPE-GKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKVFSHRYFGSGVTFTTGWVSTFSCFDKDGSFIGKNT 1071
A G +R R+ I+DLLG IRQNIKSPELADWFRPGFSTTTE DEVCAAATAMASLQ YF Y CGIPSVTL GTV DWKLLREKIER+LEFEV NPE KVM++WVGYLRKVCDGFV+SAEHP S T+ FWD+V + + GSGV + TGWVS F+CF+ DG F+GK+T
Sbjct: 52 ASDGTLRTADYPRM---IRDLLGLIRQNIKSPELADWFRPGFSTTTERDEVCAAATAMASLQGYFEYSFMCGCGIPSVTLRGTVGDWKLLREKIERLLEFEVDGNPEEDKVMQIWVGYLRKVCDGFVKSAEHPGSPETLEFWDRVLTDKRQGSGVNYITGWVSAFTCFNSDGKFLGKHT 227
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Match: D7FL09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL09_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.560e-73 Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 1
Query: 553 VRVVGNGRL*T-----LIKDLLGKIRQNIKSPELADWFRPGFSTTTETDEVCAAATAMASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVGFWDKV 969
+ V G G L T LIKDLLG+IRQNIKSPELADWFRPGFST+TETDEVCAAATAMASLQ YF + MCL C IPSVTLMGTVEDW+LLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATV FW KV
Sbjct: 49 LTVEGYGSLETADYAKLIKDLLGQIRQNIKSPELADWFRPGFSTSTETDEVCAAATAMASLQAYFEHTMCLACSIPSVTLMGTVEDWELLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVDFWAKV 192 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig92.17285.1 >prot_E-siliculosus-1a_M_contig92.17285.1 ID=prot_E-siliculosus-1a_M_contig92.17285.1|Name=mRNA_E-siliculosus-1a_M_contig92.17285.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=189bp MASLQEYFNYKMCLRCGIPSVTLMGTVEDWKLLREKIERMLEFEVLDNPEback to top mRNA from alignment at E-siliculosus-1a_M_contig92:401671..406358- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig92.17285.1 ID=mRNA_E-siliculosus-1a_M_contig92.17285.1|Name=mRNA_E-siliculosus-1a_M_contig92.17285.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:401671..406358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:401671..406358- >mRNA_E-siliculosus-1a_M_contig92.17285.1 ID=mRNA_E-siliculosus-1a_M_contig92.17285.1|Name=mRNA_E-siliculosus-1a_M_contig92.17285.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:401671..406358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |