mRNA_E-siliculosus-1a_M_contig92.17276.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17276.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17276.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Match: D7FKY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY9_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.230e-36
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARLSNGNNGSSPSGGDGRGE 252
            MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARLSN  NGSSPSGG GRGE
Sbjct:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARLSN--NGSSPSGGGGRGE 82
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Match: W7U0Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Z4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-8
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   16 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARL 201
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRKEAERR E   E +    ++E  +R +L
Sbjct:    4 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQL 65
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Match: K8Z8J1_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8J1_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 1.480e-8
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   16 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRARL 201
            F  ++++ VPA  VVGA MELFMLNTGFYDVALRKEAERR E   E +    ++E+ +R +L
Sbjct:   39 FLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMESTKRRQL 100
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Match: A0A482S9C6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9C6_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 1.500e-5
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEA 183
            MSS+     + + VP  FV+GAGMELFM+ TGFY +  RKEAERR +   + + R+AR+ A
Sbjct:    1 MSSNIIFQDLKRIVPICFVLGAGMELFMIKTGFYTIVTRKEAERRLDLWRQEEGRKARLRA 61
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Match: A0A6G0WTV1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTV1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.950e-5
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEE 153
            M+ +     +++ VPA FVVGAGMELFM+ TGFYD+  + EAE RA+ + E
Sbjct:    1 MAQASLRPFLVKLVPACFVVGAGMELFMVKTGFYDIVTKNEAEIRAQKKAE 51
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Match: A0A485L2A5_9STRA (Aste57867_14693 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2A5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.380e-5
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   28 MLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 141
            +++ VPA FVVGAGMELFM+ TGFYD+  + EAE RA+
Sbjct:   12 LIKLVPACFVVGAGMELFMVKTGFYDIVTKNEAEIRAQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FKY9_ECTSI1.230e-3696.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U0Z4_9STRA1.090e-856.45Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8Z8J1_NANGC1.480e-856.45Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A482S9C6_9ARCH1.500e-549.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0WTV1_9STRA2.950e-550.98Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L2A5_9STRA5.380e-563.16Aste57867_14693 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:295350..299210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size255
Model size1757
Exons3
Ec32 orthologEc-21_002320.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17276.1prot_E-siliculosus-1a_M_contig92.17276.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 296852..299210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936460.46007-UTR-E-siliculosus-1a_M_contig92:295349..2968511622936460.46007-UTR-E-siliculosus-1a_M_contig92:295349..296851Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 295350..296851 -
1696251089.2651184-UTR-E-siliculosus-1a_M_contig92:295349..2968511696251089.2651184-UTR-E-siliculosus-1a_M_contig92:295349..296851Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 295350..296851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936460.4791746-CDS-E-siliculosus-1a_M_contig92:296851..2969471622936460.4791746-CDS-E-siliculosus-1a_M_contig92:296851..296947Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 296852..296947 -
1696251089.2782881-CDS-E-siliculosus-1a_M_contig92:296851..2969471696251089.2782881-CDS-E-siliculosus-1a_M_contig92:296851..296947Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 296852..296947 -
1622936460.4937663-CDS-E-siliculosus-1a_M_contig92:297724..2977901622936460.4937663-CDS-E-siliculosus-1a_M_contig92:297724..297790Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 297725..297790 -
1696251089.2887728-CDS-E-siliculosus-1a_M_contig92:297724..2977901696251089.2887728-CDS-E-siliculosus-1a_M_contig92:297724..297790Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 297725..297790 -
1622936460.5347443-CDS-E-siliculosus-1a_M_contig92:299117..2992101622936460.5347443-CDS-E-siliculosus-1a_M_contig92:299117..299210Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 299118..299210 -
1696251089.2977347-CDS-E-siliculosus-1a_M_contig92:299117..2992101696251089.2977347-CDS-E-siliculosus-1a_M_contig92:299117..299210Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 299118..299210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17276.1

>prot_E-siliculosus-1a_M_contig92.17276.1 ID=prot_E-siliculosus-1a_M_contig92.17276.1|Name=mRNA_E-siliculosus-1a_M_contig92.17276.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=85bp
MSSSKFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEE
EYQARRARIEARRRARLSNGNNGSSPSGGDGRGE*
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mRNA from alignment at E-siliculosus-1a_M_contig92:295350..299210-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17276.1 ID=mRNA_E-siliculosus-1a_M_contig92.17276.1|Name=mRNA_E-siliculosus-1a_M_contig92.17276.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3861bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:295350..299210- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGCAGCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTGCCGGCGTC
TTTCGTTGTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGGTGAGTG
TTAAAGAAGCCTCTGGCAATCTCGCCGCATTTATTCTCGTTGACACTGCC
TCCTGCCTGTCAGCAGATCCGCGTAGGCGCGACAGCAACAGCACAGAGCT
ATAGCAGTGCTTCGCCTCCCGCTAGACTCCAGCTGCAGTCACCGAGTGTA
GGACACGTGCAATGACGGATTTTTTTATCAAATTCTGCTGAAGTGATGCG
TGTTCAAACTGGCTGTTGTGCAGCAGTGCCCACGTGCTGACTCGATCGAT
TGATCAAGCGATCTGCATGTCTGACTAACGGGATTGCGCAACAGCAGCAA
AGTATGTGTTCGTCGCCAGGGCTATACCCGGCGATGCAGCAAGGCTTTCC
CTTGGGGTGCTATACCGTGCAACTCACGTCAACAACGGTGTGCAATCCAT
CGATGCCGAGATGTTGCTTTTTTCTGACTACCGATAGACTCTACTCTGTG
CAGCATGTGGCTGTACAAATGCGATCCTGTCTGTGCAGTCACGAGGGGCA
TCACAACCCCTCAGTGTGTTATTGAAACCCGTGTGAAAACGTACCGACGC
AATAGCCACCTGTGGGCCCCCGGCTGACTCGCTGATGCACCCAGAAAACA
CGCCGAAAGGAAAGGCATACAACATCATGTCCAGAATGTATGGGACCTCA
CACACAAGCAAACTTTGTATCTCATATTTGAATACGAATGACGTGTTTTC
ATTGGTCAGCCGGTTAGCGCGGTCCGTGCCAGCTATTTCATGAAACACAC
ACACGTCCCTTTCTACCTTATGGACGCAAGTCTGCACCAGCCGGGGTCGC
ATAGGGGGAAGATGAACACAGGTTTCTTGGCCTTCCCTCTTTTGTCCTCT
GTAGGCACGTGACACGCGCCTATCGCGTTTTCATTCGTGGTCGATGTTTT
TCTCCAGGAAACACACGTAGAGTACATAGCACTCATGAAGAATCATTGAC
GTAGGCGTAGCACACGGTTCGCCTCGTCGAATGGAAGGGGCAGTTTGTTG
CTGGCAGCCTGTTCAGGGTGTCAGTCCGGTTTAGGTGTACGTGCTGCAGT
TTTCTTTGGACGTAAATAGCAGCTTCACGCGCCGGCGGCGCGGCCCTCTC
TTGTTCGCGAGCTTCCCACCCAGAAGCTCACATTTCGCGCTGCCCTTGAA
TGCCGCACACGAGCCGTGGGACGCGATTAATTATTGGAGTGCTGCTGAAA
GAAGCTGCTGCTCCTCATCTGCTAGTTTTTTCTGCGCAAGTTTTAAACAT
ACTCCCACTATTGTCGGTTGTTGTTAATGCTGCTGCTGCTGCTTCTGTCC
TTGCCTGCATCTGTGTGTAGGGCTTTTATGACGTGGCGTTGAGAAAAGAG
GCGGAGAGACGGGCGGAAGCAGAGGAGGAATACCAGGTCTGTGTCTGTGT
GTGTGAGAGAGAGAGAGAGAGAACCTCACTTGAGACACGCGTTCCATCGG
CACAATTCTGCCTCGAGTGGGTTCTTTTCGACGGGGTTTTGGTCGAATCG
TCGTGGCGAAATGTTTGATATGCGCAGCGCATGCGAGCGCAAGAGCACCA
GCGTTACCACGCTCGCTCAAGGCGGACCCCGATTGTCCGTCCGAAACCTA
AAACGGTACTGCTATGTATCTACCCCGAAATTTACGATCGGTGACTGTAA
AGAAAACGACCTGATATTATAGAAGGACGAGCGCATTACGTACCAAGGCA
ACTAACTGCCCATGTTCTTGCTAGCCATCTTTTCCGAAATTAATTAAGTA
CAAGGAGGCGGTCACGCCAGGACGTCTATAATAGCATGTATTCACCACCA
ACCTTTCCGGTGCTCTTTTTTTTTTTTTCGGGACGGCCGTTGTGTTGCTC
TGCTCCTTGATGGTGGTGGTGGTCTTGTTGTTCGTCGCCGTCGCCATCAT
CCACGCCTCGAAGGTTTGGTGCGGCAGAGTCACGCCAGGGTGTCTACCCA
GTGTCTAGCATGATTCACCACCATCCTTCCCGGTGCTCCATTTTTTCAGG
ACGACCTTTGTGTTTCTCTGTATTTTGGTTGTTCGTTGTGGCCATCGCGT
TCATCCAAGCTGTCATCGGTTTTAGACTTGGTTGCGGCGGTGACTGACCA
TTTTTTTTTTTTGTTGTGTGTGTTTTCGAACGATGTAACGGGGTTTTACC
TCTGGCGATGCAGGCGAGACGAGCTAGGATAGAGGCGCGGAGACGAGCGA
GACTCAGCAACGGCAACAACGGAAGCAGTCCAAGCGGAGGGGACGGGCGT
GGCGAATGATGCGCCGCGGTCTCACCCCCCGCCCCCGGGTAGTGGGCGCG
ATTCCGACACCATCAACAAAGACAACCTCAATAACGGGAGTACGTCGGCA
GGCGTGTCGCAGCGCGCGGGATTTTTTTTGGAAACCGGCTATTTTGCGCG
ATTGATTCGAGGAGGGCGTGATCACCTTATGGGCCGGTGACCTCTCCCTT
GCTTCCTTCCCTTTGTTTGGCTGAAAAAAAAAAAGAGGCGTTTTGCATTT
AGAGGCAGTTGGCGCGTCTGTTTGAAGGAGGTGCAATTCTTCACGATATC
GGTCGGTGATCTCCCTTTTGCTGCATTCCCGTCGTCGGCCGAGAGAAGTA
AGTGGTTGTGTGTCTGGAGATATTTTTTCGAGGATGTTTCAAGGAGGGGT
GTTCATGTTGTCGTTTCTGTGATCTGATCTCCCTCCCTTCCTCCCTTCTC
GTGGTTGGGAGAGAGGATGCTGGCGTGTGTGTGTTTGAGGAAAATTGTTG
CGAGGTTGGTTCGATTAGGTGTCTTCAAGTTACCGGTCGGTGATCTCCCG
CTGCTTCCTTGGCGTGTTGTTGGGTATAGAGAAGCGACAGTGATCCCTCG
CTTCCCAGGTGCAGCGCAACTAAGGCGAGCGAGACCCGCACTGTAAATAA
TACAATGGACGCGACTAGACCAAGGTCCGAGGCTACGCGGTCATGTTTTG
TTTTTTTTTAAGCTGCACTTTGGAAAAATCAACGGCGCAGCCGTCTCGAT
GTTTTATTTTTGGTAGTCCTCCTGATTCCCGTCTCTCTTTGCTGCTTTAG
GAGTTCGTTGTGGCTCGGTGGGCAACGAGCTTGCCTGTTTTACCCCGAAT
TAGTGAAAGTGGACTTCATCAGCGGGATACCTGCGCATTCATCGTGTTAG
ACCGCGCGACGGTGCTCTTGGTAGAGCTGCCTCATCCTGTCCTTCATCGA
GGCCCAAACTGGAGCCTTTTGCATATATGGCTCATGTTTCTGGGGGCCGG
CGCAGGTTTCCATGCAGGCAAAGCGACAACGCTTTCCGCGTAACCAGCCA
ACACTTGTGTGCTGTATCTTGCTGGTTGACCTGTGGGTCGCAGGTAGTGG
TACTACGGTTGATGTTGTGGTTGGTATTGTGTAGACATTTTCGCATTTTC
TTGCCCACCCCCATTTTTTTGCCCACCCCGAGGCGTTCATCTGTCTCAGC
AAGAAAACCGTCGGGCCATGGACCGGTTTATCTACAGTACCTACGACCCG
CCTTGATTGCTCGGCTAGACTACACGTTTGGTATTCATGCGTAATGCTAA
AACAGCTAAAGGAGGCTCACACTCCGCTCACGTTCGTAGCTGAGTACCTT
AGACCGGTTCCTTGGGGCTGGGGATCAGTGTGATCCAGGCGTACCTTCAT
CTGATCTCCACCTTTTTTTGGTAGTCTCCTCCTTGTCACATAATGCATAC
GGTAACTGATTGACAAGTAGAAATGTGTCACCTTGCTGACCACACCCCCA
AGGAGATGTAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:295350..299210-

>mRNA_E-siliculosus-1a_M_contig92.17276.1 ID=mRNA_E-siliculosus-1a_M_contig92.17276.1|Name=mRNA_E-siliculosus-1a_M_contig92.17276.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:295350..299210- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGCAGCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTGCCGGCGTC
TTTCGTTGTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGATGAGCA
GCAGCAAGTTCGCCACCGTCATGCTGCAGTTTGTGCCGGCGTCTTTCGTT
GTCGGAGCCGGCATGGAGCTGTTCATGCTCAACACGGGCTTTTATGACGT
GGCGTTGAGAAAAGAGGCGGAGAGACGGGCGGAAGCAGAGGAGGAATACC
AGGGCTTTTATGACGTGGCGTTGAGAAAAGAGGCGGAGAGACGGGCGGAA
GCAGAGGAGGAATACCAGGCGAGACGAGCTAGGATAGAGGCGCGGAGACG
AGCGAGACTCAGCAACGGCAACAACGGAAGCAGTCCAAGCGGAGGGGACG
GGCGTGGCGAATGAGCGAGACGAGCTAGGATAGAGGCGCGGAGACGAGCG
AGACTCAGCAACGGCAACAACGGAAGCAGTCCAAGCGGAGGGGACGGGCG
TGGCGAATGA
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