mRNA_E-siliculosus-1a_M_contig92.17265.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17265.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17265.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 3.590e-86
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 MNEDNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQEAPRK 420
            MNEDNGVQISFD+ECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLR+KASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQEAPRK
Sbjct:    1 MNEDNGVQISFDEECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQEAPRK 140          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.510e-48
Identity = 83/130 (63.85%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    7 EDNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETL 396
            ++  VQ+SFD+ECR+RVLDP+ FKHSE LEE C+ F  K++ FNA+VH IV VL  +A+RI+K+KLRAIG RNKV+GE E+R R++ +LQ ++KEKM ELDR N+QYQSLLR+E+EQ ALIERLSNSE++
Sbjct:    6 QEEKVQVSFDEECRVRVLDPDVFKHSEELEENCKAFATKMQAFNAAVHGIVAVLDAHASRIEKQKLRAIGMRNKVDGEAEHRARQRMALQVLIKEKMSELDRNNVQYQSLLRVEAEQQALIERLSNSESV 135          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.260e-40
Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = 1
Query:    7 EDNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 390
            E+N V I FD+E R+RVLDPE+FKH+E L E+C GFV KI++F+ +VH +V+VL   A +I++EKLRAIGQRN VE E+E R  KK +LQ+ + EKM EL+R N QY SL+ +E+EQLALIE+LSN E
Sbjct:    2 EENRVPICFDEESRVRVLDPEKFKHTEELAEQCTGFVSKIQDFSGTVHVLVDVLGAQADKIEREKLRAIGQRNMVESEVENRESKKRALQSQINEKMAELERFNKQYNSLVNLEAEQLALIEKLSNHE 129          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A6V2PVC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PVC6_HETAK)

HSP 1 Score: 140 bits (353), Expect = 2.540e-40
Identity = 76/129 (58.91%), Postives = 103/129 (79.84%), Query Frame = 1
Query:   10 DNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETL 396
            D  V+ISFDDE +IRVLD E+FKH+E LE EC  FV KI++F+++VH++VEVL + A RI+  KL+AIGQRN+VEGE E R R++ +L TM+ EK  ELDR  LQYQSL  +E+EQLALIE+L+N++++
Sbjct:    2 DEKVEISFDDEYKIRVLDAEKFKHTEELERECTDFVKKIQDFHSNVHSLVEVLDKQAKRIEHAKLKAIGQRNQVEGERENRERQRIALNTMIAEKKAELDRYTLQYQSLKGVEAEQLALIEKLTNNDSI 130          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A7S2BU93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU93_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.950e-40
Identity = 76/131 (58.02%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    1 MNEDNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSET 393
            ++++  V I FDDE RIRVL PE+FKH+E L E+C  FV+KI +F+ +VH +VEVL   A +I+ EKL+AIGQRN VE E E R R++ +LQ+ + EKM ELDR   QYQSL R+E+EQLALIE+LSN+ET
Sbjct:   22 VDDEKKVNICFDDESRIRVLSPEKFKHTEELAEQCTAFVNKIEDFSGTVHVLVEVLDAQAKKIELEKLKAIGQRNMVESETENRARRQLALQSQINEKMAELDRYAKQYQSLARVEAEQLALIEKLSNNET 152          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A7S2V367_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V367_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.230e-38
Identity = 72/124 (58.06%), Postives = 99/124 (79.84%), Query Frame = 1
Query:   19 VQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 390
            V ISFDD+ RIRVLD E++KH+E LE+EC+ FV KI+ FN +VHT+VEVL   A RI+  KL+AIGQRN+VEGE E+R R++ +L T++ EK  ELDR  LQ+QSL+ +E+EQ A++ERL+N++
Sbjct:    6 VSISFDDDYRIRVLDSEKYKHTEELEKECKEFVQKIQTFNTTVHTLVEVLDAQAKRIENAKLKAIGQRNQVEGEREHRERQRIALNTLIAEKKAELDRYTLQHQSLVIVEAEQAAMVERLTNND 129          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A7S2GG26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG26_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.990e-33
Identity = 65/130 (50.00%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 MNEDNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 390
            M  D+ V I FDDEC+IRVL PE+F H++ L E+C  FV+KI +F+ +VH +VE+L   A  I+ EKLR IGQRN+VE E+++R R++ +LQ  + EK  EL+R +  Y SL+RIE+EQ  L++  SNS+
Sbjct:    5 MKNDDKVNICFDDECKIRVLSPEKFDHTKELAEQCTAFVNKIADFSDTVHVLVEILDSQAKMIETEKLRTIGQRNRVESEMDHRSRQQLALQAQIAEKKAELERCSKHYDSLVRIEAEQNKLLKNFSNSD 134          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A7S1CRI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRI3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.210e-31
Identity = 67/127 (52.76%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   10 DNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 390
            D+ V I+FDD+ R+RVL+ ++F  +  LEE C  FV KI  FNA+VH++VEVL  +AA I+KEKLRAIG RN  E E E R R+K  ++ ++ EK   LDR   QY+SL ++E EQ ALIE+LSN+E
Sbjct:    2 DSNVTITFDDKYRVRVLEADKFDQTRALEEACSTFVQKIEAFNATVHSLVEVLSTSAAAIEKEKLRAIGARNLSEAEPETRERRKKQIRALIAEKRAALDRLQRQYESLEKVEGEQRALIEKLSNNE 128          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: A0A067BLY1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLY1_SAPPC)

HSP 1 Score: 112 bits (280), Expect = 3.270e-29
Identity = 65/129 (50.39%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   13 NGVQ---ISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 390
            N VQ   I FDDE R+RVL+ E+F H++ LE EC  FV K+ +F+++V  ++E++   A RI+ EKL+AIGQRN+V+ E+E R R+K  L+ ++KEK  EL+R   QY SL +IE EQ  LIE+LSN+E
Sbjct:    4 NDVQLPRICFDDEYRVRVLELEKFVHTQELETECNQFVSKMEDFHSTVKGVLEIMEAQAKRIELEKLKAIGQRNRVDNEIENRNRQKLMLEVLIKEKQTELERFCQQYISLTKIEDEQQQLIEKLSNNE 132          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Match: H3GSG3_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GSG3_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 9.310e-29
Identity = 58/122 (47.54%), Postives = 88/122 (72.13%), Query Frame = 1
Query:   25 ISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 390
            I FDD+C++RVLD +   H++ L++E   F  K+ EF+  V  ++EV+   A RI++EKL+AIGQRN+V+ E+E R+R+K  L+  +KEK  EL+R NLQ+QSL +I  EQ  L+++LSN+E
Sbjct:   11 ICFDDDCQVRVLDKDNITHTQELDQESNQFATKLEEFHEIVKGVLEVMEGQAKRIEREKLKAIGQRNRVDSEVENRIRQKQMLELQIKEKKTELERYNLQFQSLTKIADEQQVLMDKLSNNE 132          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA8_ECTSI3.590e-8698.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJD0_9STRA2.510e-4863.85Intraflagellar transport protein 20 n=1 Tax=Tribon... [more]
A0A7S2W6I1_9STRA1.260e-4059.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V2PVC6_HETAK2.540e-4058.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BU93_9STRA4.950e-4058.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2V367_9STRA1.230e-3858.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GG26_9STRA1.990e-3350.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1CRI3_9STRA2.210e-3152.76Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A067BLY1_SAPPC3.270e-2950.39Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
H3GSG3_PHYRM9.310e-2947.54Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:186164..187693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size423
Model size423
Exons2
Ec32 orthologEc-26_002460.1
Ec32 ortholog descriptionIntraflagellar transport protein 20
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2AFZ8@1,2RYYR@2759
EggNOG free text desc.opsin transport
GOsGO:0000139,GO:0001655,GO:0001736,GO:0001738,GO:0001750,GO:0001822,GO:0002009,GO:0002046,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005801,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005902,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007164,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008283,GO:0008306,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009888,GO:0009894,GO:0009966,GO:0009987,GO:0010506,GO:0010646,GO:0010970,GO:0012505,GO:0014706,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016241,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031503,GO:0031514,GO:0031984,GO:0032391,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034067,GO:0034613,GO:0035051,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0036372,GO:0036477,GO:0042073,GO:0042461,GO:0042490,GO:0042692,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044292,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048583,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051716,GO:0055007,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060429,GO:0060491,GO:0060537,GO:0060828,GO:0061061,GO:0061351,GO:0061512,GO:0061842,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072001,GO:0072359,GO:0072657,GO:0072659,GO:0090102,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098791,GO:0098858,GO:0098862,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1902636,GO:1990778,GO:2000785
KEGG koko:K16473
Preferred nameIFT20
Seed eggNOG ortholog2880.D7FRA8
Seed ortholog evalue1.9e-66
Seed ortholog score258.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936458.4400382-CDS-E-siliculosus-1a_M_contig92:186163..1863581622936458.4400382-CDS-E-siliculosus-1a_M_contig92:186163..186358Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 186164..186358 -
1696251088.2382338-CDS-E-siliculosus-1a_M_contig92:186163..1863581696251088.2382338-CDS-E-siliculosus-1a_M_contig92:186163..186358Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 186164..186358 -
1622936458.4592931-CDS-E-siliculosus-1a_M_contig92:187465..1876931622936458.4592931-CDS-E-siliculosus-1a_M_contig92:187465..187693Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 187466..187693 -
1696251088.253415-CDS-E-siliculosus-1a_M_contig92:187465..1876931696251088.253415-CDS-E-siliculosus-1a_M_contig92:187465..187693Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 187466..187693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17265.1prot_E-siliculosus-1a_M_contig92.17265.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 186164..187693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17265.1

>prot_E-siliculosus-1a_M_contig92.17265.1 ID=prot_E-siliculosus-1a_M_contig92.17265.1|Name=mRNA_E-siliculosus-1a_M_contig92.17265.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=141bp
MNEDNGVQISFDDECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVH
TIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRKKASLQTMLKEKML
ELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQEAPRK*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig92:186164..187693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17265.1 ID=mRNA_E-siliculosus-1a_M_contig92.17265.1|Name=mRNA_E-siliculosus-1a_M_contig92.17265.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:186164..187693- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAACGAAGACAACGGCGTACAGATATCCTTCGACGATGAGTGCCGCAT TCGTGTTCTGGATCCAGAACAGTTCAAGCACTCCGAGATGCTAGAAGAAG AATGCCGGGGATTTGTCGACAAGATCCGAGAATTCAACGCCTCAGTCCAC ACGATCGTGGAGGTCTTGCACGAGAATGCAGCACGAATCGACAAGGAAAA GCTACGAGCTATTGGGCAACGAAATAAGGTATGAGACTCCTTGCTGCTTG TGTGAAACTCATTCTATCTCAGTGCAATTCGGTAGCAGTCCCTGGGCTTT ACCCTCGGTTTGCCCTTTGTTCGAATTTCTTCTGGAGACCCCGACACCGG AGAACCACTTCATTGTTGCGTGGAGCGGGAGCTCTGTGCTCTGTGCTCTG TGCATGCTGTATGCATATGGAGAATAAGAATAGCGAACGTCATTTCGCGT AAGCCCCCATTTACAGCACAGGACCACAGGTAGCTACATTGAACACCAGG GTTCAAGATCTGCAGTCCAAAGTCCCGCATAACTCACATCTTGTACATAC ATTGACATCCGACGCAGAGAGTGGAATTTCGAACAAACTCCGACTGGGTG CACACTCATTTGCCTCGACCATGGGTGAATCTTGCGAGGGGGGCGTCATT GGCTGTAAGTCTGATATGCATACTCGTGTACATTTGCTGTTCGGTAGGGT GCGATACGTCTTCTATACTATGCGTATCTCTATATAGTCTACCGATATTT CCACGGGTAGCCAAACAGGGCGTATCCCAGACTACAATCTCACAGACTCA GTGGTATGAGGTCGACGGCTGCCTCTACCATTGCAGCGACAGCCTGTGGG AATCAAAACCATGGCCTACAGCAGTCTAGACTTGCGACAAAGGTCATAAT GGATTTCTCCCATCGTAAGTTCTATATTCTTTTTAGAGGTTATCCGGGTC TTTGGCCGGAAAGTACTCGATACGGCACACATGTTGCGTGTTTCCGTCCA ATCTTTGTTGGTTCCCAGTCTACACCTTCGGGACACACGTTTGCCGCACC GGCTGGGGTCAACCAGGAGGAAGGCAAAACACAGCATTTTTCCGTCCACC ACCTGTGGTCTGGCCTTCTACTTTTAACGCGAGAAGGGTTCAGCCGCCCT CTCCTCTATATTCGCGTACTCACGACCGATTGTGCTCTTGCCACTGCTAA ACTGCGGGCTTCATCAATTCGGAGAGATTCGAAACCACACCCTAGATTCA GAGGGTTTGCAAGGTTACCAACTGAGTCACGGTACACACACACACCCTGA ATGACCCCCTTCTACAACCCCCGTTTGCTTGCCAGGTCGAGGGGGAGCTA GAGTATCGTCTGCGAAAAAAAGCTTCTCTCCAGACAATGCTTAAGGAAAA GATGCTGGAGCTGGATCGTCAGAACCTTCAGTACCAGTCTCTTTTGAGGA TCGAGAGCGAACAGCTAGCCTTGATCGAGCGGCTCAGCAATAGCGAGACA CTCACAGAGCAGGAAGCCCCACGCAAGTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:186164..187693-

>mRNA_E-siliculosus-1a_M_contig92.17265.1 ID=mRNA_E-siliculosus-1a_M_contig92.17265.1|Name=mRNA_E-siliculosus-1a_M_contig92.17265.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:186164..187693- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAACGAAGACAACGGCGTACAGATATCCTTCGACGATGAGTGCCGCAT
TCGTGTTCTGGATCCAGAACAGTTCAAGCACTCCGAGATGCTAGAAGAAG
AATGCCGGGGATTTGTCGACAAGATCCGAGAATTCAACGCCTCAGTCCAC
ACGATCGTGGAGGTCTTGCACGAGAATGCAGCACGAATCGACAAGGAAAA
GCTACGAGCTATTGGGCAACGAAATAAGATGAACGAAGACAACGGCGTAC
AGATATCCTTCGACGATGAGTGCCGCATTCGTGTTCTGGATCCAGAACAG
TTCAAGCACTCCGAGATGCTAGAAGAAGAATGCCGGGGATTTGTCGACAA
GATCCGAGAATTCAACGCCTCAGTCCACACGATCGTGGAGGTCTTGCACG
AGAATGCAGCACGAATCGACAAGGAAAAGCTACGAGCTATTGGGCAACGA
AATAAGGTCGAGGGGGAGCTAGAGTATCGTCTGCGAAAAAAAGCTTCTCT
CCAGACAATGCTTAAGGAAAAGATGCTGGAGCTGGATCGTCAGAACCTTC
AGTACCAGTCTCTTTTGAGGATCGAGAGCGAACAGCTAGCCTTGATCGAG
CGGCTCAGCAATAGCGAGACACTCACAGAGCAGGAAGCCCCACGCAAGTA
AGTCGAGGGGGAGCTAGAGTATCGTCTGCGAAAAAAAGCTTCTCTCCAGA
CAATGCTTAAGGAAAAGATGCTGGAGCTGGATCGTCAGAACCTTCAGTAC
CAGTCTCTTTTGAGGATCGAGAGCGAACAGCTAGCCTTGATCGAGCGGCT
CAGCAATAGCGAGACACTCACAGAGCAGGAAGCCCCACGCAAGTAA
back to top