mRNA_E-siliculosus-1a_M_contig92.17253.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: D7FR96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR96_ECTSI) HSP 1 Score: 402 bits (1034), Expect = 3.230e-139 Identity = 197/209 (94.26%), Postives = 200/209 (95.69%), Query Frame = 1
Query: 88 MRMLPVSAFHTTAVWAARYSRLLGLPSCLLKPPRRGDISLFKTTAQRDKHMASIQDGRGGHNRGVAAMPKVDGGVACTATLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATHPVNRLGEEILGV 714
MRM PVSAFHTTAVWAARYSRLLG+PSCLLKPPRRGDISLFKTTAQRDKHMASIQDGRGGH RG+ AMPKVDGGVACTATLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGAT PVNRL + V
Sbjct: 1 MRMPPVSAFHTTAVWAARYSRLLGIPSCLLKPPRRGDISLFKTTAQRDKHMASIQDGRGGHTRGMTAMPKVDGGVACTATLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAV 209
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A7S2GEU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GEU5_9STRA) HSP 1 Score: 148 bits (373), Expect = 7.410e-40 Identity = 71/118 (60.17%), Postives = 83/118 (70.34%), Query Frame = 1
Query: 340 VASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATHPVNRL 693
V +PE+ME GA ++ GD++ L GDLG GKTCFARGFV+ARVGDP L VTSPSYLLD +YEV DEDL +HHMDLYRL G L + F C+CL+EWPDRLG P RL
Sbjct: 49 VNTPEDMERFGATLARGSTAGDIIFLTGDLGAGKTCFARGFVKARVGDPYLRVTSPSYLLDQSYEVEDEDLIIHHMDLYRLSGTIGTVPLDLETKFRQCICLLEWPDRLGTDIPEERL 166
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A835Z1V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V9_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.790e-38 Identity = 74/125 (59.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 319 TATLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATHPVNRL 693
T T + + SPE ME+ G A GDV+LL GDLGTGKTCF+RGF+R DP L VTSPSYLLDNTYE D + +HHMDLYRL G DL VL IP + T VCLVEWPDRL P RL
Sbjct: 97 TYTSSLMIRSPESMEQLGQLLARGAEAGDVILLIGDLGTGKTCFSRGFIRECAEDPDLLVTSPSYLLDNTYEATDGTM-VHHMDLYRLSGADDLHVLNIPEILSTSVCLVEWPDRLQHLTPSVRL 220
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A7S2EJ05_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ05_TRICV) HSP 1 Score: 138 bits (347), Expect = 3.670e-36 Identity = 67/123 (54.47%), Postives = 83/123 (67.48%), Query Frame = 1
Query: 325 TLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATHPVNRL 693
TL +SV +PE+ME+ GA SGGDV+LL GDLG GKTC +RGFVRAR G G+ VTSP+YLL N+Y T++HMDLYRL+GG DL L + +CL+EWP RLG + P RL
Sbjct: 3 TLTLSVPTPEDMEDVGAVLSVGTSGGDVILLGGDLGAGKTCLSRGFVRARTGMEGMRVTSPTYLLSNSYPADGGRTTIYHMDLYRLKGGEDLEPLDMAKTLTDGICLIEWPSRLGESLPPARL 125
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A7S2XNM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNM5_9STRA) HSP 1 Score: 132 bits (333), Expect = 3.260e-33 Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 325 TLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATHPVNRL 693
+L + + +PE+ME+ GA GD +LL GDLG GKTC ARGFVRAR G ++VTSP+YLL NTYE D L +HHMDLYRL G DL L + V C+ L+EWP RLG+ P RL
Sbjct: 87 SLCLDIPTPEDMEDLGAVLSMGTGPGDSILLKGDLGAGKTCLARGFVRARTGMADISVTSPTYLLSNTYEADDGALLIHHMDLYRLSGDKDLEPLNMNYVLSNCLSLIEWPSRLGSLTPTVRL 209
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A7S4SUD7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SUD7_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.590e-32 Identity = 66/124 (53.23%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 325 TLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGT-DLRVLGIPGVFETCVCLVEWPDRLGATHPVNRL 693
+L++S+ + E+ME+ GA GGD +LL GDLG GKTCF+RGFVRAR G L VTSP+YLL NTYE D + +HHMDLYRL G DL L + V C+ L+EWP RLG + P RL
Sbjct: 186 SLQLSIPTSEDMEDVGAIISMGTKGGDTILLDGDLGAGKTCFSRGFVRARTGYIDLRVTSPTYLLSNTYEADDGNTIIHHMDLYRLSGNKEDLEPLDMEHVLTKCISLIEWPSRLGDSAPPERL 309
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: K0S9V1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9V1_THAOC) HSP 1 Score: 128 bits (321), Expect = 1.280e-31 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 325 TLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQG-GTDLRVLGIPGVFETCVCLVEWPDRLGATHPVNRL 693
+LE+++ +PE+ME+ G ++ GDV+LL GDLG GKTCF+RGFVRA+ G P VTSP+YLL N Y V D +L ++HMDLYRL G G DL L + VFE + L+EWP RL AT P RL
Sbjct: 73 SLELTIPTPEDMEDIGGLLSVNSLPGDVILLDGDLGAGKTCFSRGFVRAKTGLPDERVTSPTYLLSNAYSV-DSNLKVYHMDLYRLSGNGDDLAPLDLENVFENGISLIEWPSRL-ATKPETRL 194
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A7S2LPC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPC8_9STRA) HSP 1 Score: 122 bits (305), Expect = 4.550e-29 Identity = 64/127 (50.39%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 328 LEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRL--QGGTDLRVLGIPGVFETCVCLVEWPDRLGATH---PVNRL 693
L V + SPE ME GA D+ GDV+ L GDLG GKTCF+RGFVR RV P L VTSP++LL NTY +++ +HHMDLYRL +L L +P V E C+ ++EWP RL P NRL
Sbjct: 105 LHVKIESPEIMESLGAALAKDSVPGDVIFLDGDLGAGKTCFSRGFVRERVQRPRLRVTSPTFLLSNTYFCPQDEVEVHHMDLYRLFTNSKEELEPLDLPRVMEECISIIEWPSRLACYSDMIPPNRL 231
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A7S3M7Y0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7Y0_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.340e-27 Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 1
Query: 400 GDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGG-TDLRVLGIPGVFETCVCLVEWPDRL 666
GDV+LL GDLG GKT +RG ++A+ DP + VTSPSYLLDNTY + D +HHMDLYRL G T++ +LGIP +F++ +CLVEWP+RL
Sbjct: 17 GDVLLLQGDLGAGKTTLSRGIIQAKFRDPSMVVTSPSYLLDNTYRYGENDY-IHHMDLYRLPVGYTEMGILGIPSIFDSALCLVEWPNRL 105
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Match: A0A6A3KYY3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KYY3_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.300e-25 Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 346 SPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGT--DLRVLGIPGVFETCVCLVEWPDRLGA-THPVNRLGEEI 705
S +ME+ G GDV+ L GDLG GKTC ARGFVRA P LAVTSP+YLL NTY+ A E ++H+DLYRL T D+ LG+ FE + LVEWP+RL A + P RL EI
Sbjct: 56 SARDMEQLGQRLARGRQAGDVLFLHGDLGCGKTCLARGFVRALTQLPELAVTSPTYLLVNTYDEASELPAVYHVDLYRLDAVTEQDVAALGLAEAFEQGITLVEWPERLDAESAPTERLDVEI 178 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig92.17253.1 >prot_E-siliculosus-1a_M_contig92.17253.1 ID=prot_E-siliculosus-1a_M_contig92.17253.1|Name=mRNA_E-siliculosus-1a_M_contig92.17253.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=282bp MNLRSYIAYLNLVVHCSMRMLPVSAFHTTAVWAARYSRLLGLPSCLLKPPback to top mRNA from alignment at E-siliculosus-1a_M_contig92:112453..114172- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig92.17253.1 ID=mRNA_E-siliculosus-1a_M_contig92.17253.1|Name=mRNA_E-siliculosus-1a_M_contig92.17253.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1720bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:112453..114172- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:112453..114172- >mRNA_E-siliculosus-1a_M_contig92.17253.1 ID=mRNA_E-siliculosus-1a_M_contig92.17253.1|Name=mRNA_E-siliculosus-1a_M_contig92.17253.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1692bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:112453..114172- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |