mRNA_E-siliculosus-1a_M_contig92.17249.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17249.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17249.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: D7FYM6_ECTSI (Thioredoxin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM6_ECTSI)

HSP 1 Score: 528 bits (1361), Expect = 1.650e-189
Identity = 263/270 (97.41%), Postives = 268/270 (99.26%), Query Frame = 1 
Query:    1 MAGETIVHRRRWARFVHLYYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQEFRTTSYSRQGLRGKR 810
            MAGE IVHRRRWARFVHL+YVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETE+IGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGRE+CRLPTFASDGSV+RARMDERGVI YFELDQEFRTTSYSR+GLRGKR
Sbjct:    1 MAGENIVHRRRWARFVHLHYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEIIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREVCRLPTFASDGSVVRARMDERGVINYFELDQEFRTTSYSRRGLRGKR 270
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A6H5JZG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 9.650e-62
Identity = 108/133 (81.20%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:  166 EVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAV 564
            EVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT               EVSTLNPGEFQSMVRSSSAQAPG+RVAWLVMFHADWCSSS NLQPMFGALARR      RF +
Sbjct:    2 EVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT---------------EVSTLNPGEFQSMVRSSSAQAPGDRVAWLVMFHADWCSSSRNLQPMFGALARRCVRCGFRFMI 119
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A6V1S3B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S3B1_HETAK)

HSP 1 Score: 170 bits (431), Expect = 2.730e-48
Identity = 99/254 (38.98%), Postives = 146/254 (57.48%), Query Frame = 1 
Query:   40 RFVHLYYVVNAALVLNYGIVRWYMSAP-RLTSQATWTGFSQETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNR-----RFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQEFRTTSY 783
            RF+H YY+ N  L+L Y +VR+    P  L    T  GF++E E+I LA   L+ K+ + AT D++L + F+ GK A   LLF++  P    YL++    +L V  P  +L   + ++  G FQ +V++        R A LVMFH DWC      +P+F  +A R+          RFA VD+V  PE A++  ++ +GTSKQLPT  LF  G E+ R+PTF SDG V++   D +G++K+FELD++F  TSY
Sbjct:    7 RFLHPYYLTNFLLLLIYPLVRFTYGIPDSLRDTRTMLGFTKEVEMILLAFVALIVKFARAATLDQYLDKVFLFGKMANGALLFYINRPFATGYLVI-AFVTLAVLNPPKILNLSIESMGMGTFQEVVKNCR----DPRRAALVMFHCDWCKDCTLTEPIFSRIADRFRGGGXXXGPYRFAKVDLVRFPELADEYAVDVSGTSKQLPTFILFYKGEEVKRMPTFKSDGQVVKTGFDVKGMMKWFELDKDFTQTSY 255
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A1X6P1N4_PORUM (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1N4_PORUM)

HSP 1 Score: 110 bits (276), Expect = 2.310e-25
Identity = 77/268 (28.73%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:    7 GETIVHRRRWARFVHLYYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRA-RMDERGVIKYFELDQEFRTTSYSRQGLRGK 807
              +++ R   +RF+  YY++NA L+  + + R     P   +     GF++E+++   A    V++     T D +L+   +  + A+ V+LFF+       ++IL+T   LV P PR   P+ VS LN   F   V  +  +     V WL   HA W      L P+   L   Y     R+A +D     + A DL+++TA TS+QLPT+ +F+ G+E+ RLPT   DG  +   +M    +++   LD+  R      +  R K
Sbjct:    2 APSLISRFFSSRFLSPYYLLNAILIGAFVLFR-IRDPPAELATVDPMGFTKESQIYFCAGLMYVTRALSAPTLDVYLSSVLLFTRVAIIVVLFFMSPALAAVFVILFTFVGLVFPQPRATTPAAVSVLNRVSFAERVTRNKHKTI--TVVWL---HAPWSPRCTGLAPLLNRLVAAYDHPRLRWAKLDASVWTDVAADLDVSTAATSQQLPTVVVFSQGKELARLPTLGRDGGKLEGLKMTYASLVEGLGLDERLRVAEAWEEEARNK 263
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A8B7Y1N7_ACAPL (thioredoxin-related transmembrane protein 2-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y1N7_ACAPL)

HSP 1 Score: 106 bits (265), Expect = 8.730e-24
Identity = 61/211 (28.91%), Postives = 103/211 (48.82%), Query Frame = 1 
Query:  160 ETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQEFRTTSYSRQ 792
            ET V+      LV K RK+ +F E+LA+ F+ GK A AVL F+    + + Y++L     +V P P +     V+  N    +  + SS       RV WL+ F+  W        P+F  L+  Y+  + +F  +D+  + + A+   ++ +  S+QLPTL LF  G+E  R P   S G+ ++    +  +I  + L+  ++TT    Q
Sbjct:   55 ETNVLFFLGCILVVKNRKLPSFREYLAKMFMFGKVANAVLFFYADFRYAILYVVLALVVLIVFPEPIYCGRQNVTYFNSSTLEEELTSSP------RVTWLIEFYTPWSGRCQRFAPVFADLSLSYSHNHLKFGKIDVGRYTDVAKKYKVDVSSLSQQLPTLVLFEGGKETLRKPGRNSKGATVKHHFTKENIISDYNLETLYQTTKSKAQ 259
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: UPI001AAD9EB8 (thioredoxin-related transmembrane protein 2 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI001AAD9EB8)

HSP 1 Score: 92.4 bits (228), Expect = 2.440e-18
Identity = 64/254 (25.20%), Postives = 116/254 (45.67%), Query Frame = 1 
Query:   34 WARFVHLYYVVNAALVLNYGIVRWYMSAPRLTSQAT-----------WTGFSQETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQ 762
            W      YY+++A L +++ ++R    +P  T+  T           W    +E E++   +A ++ K R+  T ++ +   F+  K A  +L F + +   + Y+ L     +    P ++ P  +   N    +  ++S        RV WLV F A+W S   +  P++  L+ +Y     +F  VDI  +P+ +    ++T+  SKQLPTL LF SG+E+ R P     G  +        VI+ F L++
Sbjct:   18 WRWVSQPYYLLSALLSVSFVMIR--KISPVCTALPTQREDGNPCDFDW----REVEILMFLSAIVMMKNRRSITIEQHVGNIFMFSKVANTILFFRLDLRMGLLYVTLCLVFLMTCKPPLYMGPEHIKYFNDKTMEEEMQSD------RRVTWLVEFFANWSSECQSFAPIYAELSLKYNCAGLKFGKVDIGRYPDVSTKYGVSTSPLSKQLPTLILFQSGKEVLRRPQVDKKGRAVSWSFTPENVIREFNLNE 259
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A6Q2YXK4_ESOLU (Thioredoxin domain-containing protein n=3 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2YXK4_ESOLU)

HSP 1 Score: 90.5 bits (223), Expect = 1.430e-17
Identity = 55/213 (25.82%), Postives = 101/213 (47.42%), Query Frame = 1 
Query:  157 QETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQEFRTTSYSRQG 795
            +E E++   +A ++ K R+  T ++     F+  K A  +L F + I   + Y  L TA  +    P ++ P  +   +     + +   S      RV W+V F+A+W S   +   +F  L+ +Y     RF  +D   + E A+   ++T+  ++QLP+L LF SGRE+ R P   S    +     E  VI+ F L++ ++ +   ++G
Sbjct:   64 REVEILMFLSAIVMMKNRRAITLEQHAGNLFMFSKVANVILFFRLDIRLGILYFALITAFVMTCKQPLYMGPEYIKYFSDKTIDAELNQDS------RVTWIVEFYANWSSECQSFASVFANLSLKYNCTGLRFGKIDAGRYDEVAKRYQVSTSPLARQLPSLVLFQSGREVMRRPMVDSKRRAVSWTFSEENVIREFNLNELYQASKQMKKG 270
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A6I9XCY0_9HYME (thioredoxin-related transmembrane protein 2 homolog n=2 Tax=Formicidae TaxID=36668 RepID=A0A6I9XCY0_9HYME)

HSP 1 Score: 89.0 bits (219), Expect = 3.030e-17
Identity = 66/224 (29.46%), Postives = 109/224 (48.66%), Query Frame = 1 
Query:   55 YYVVNAALVLNYGIV-RWYMSAPRLTSQATWTGFSQETEVIGLATATLVSKYRKMA--TFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGE-FQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIR 714
            YY++N  L ++Y +  R+ +    +  Q       +ETE++      ++ + RK    T   +L   FV  K A  +L F+  +   + +  ++  C+L++P P +  P  V  L+  +  Q  ++  +      RV WLV F+  W  +     P+F  L+  Y  +N +F  VDI  +P+ A+   I+ A TSKQLPTL LF SGREI R P     G  ++
Sbjct:   14 YYLINILLSISYILSKRFPVICNYIFVQDDCELDGRETEILFFLMIVIMMRTRKTGSVTMINYLTSSFVYTKVANLILWFYADVRMGILFAFIFILCALILPEPTYQGPENVIYLHGADGLQEELQRDT------RVVWLVAFYTAWNPACVTFAPIFSELSVEYTLENFKFGKVDIGRYPDAAKRHRISDASTSKQLPTLILFKSGREIERRPYMDHKGKFVK 231
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: A0A674BB55_SALTR (Thioredoxin-related transmembrane protein 2-B-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674BB55_SALTR)

HSP 1 Score: 86.3 bits (212), Expect = 3.390e-16
Identity = 52/213 (24.41%), Postives = 99/213 (46.48%), Query Frame = 1 
Query:  157 QETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQEFRTTSYSRQG 795
            +E E++   +A ++ K R+  T ++     F+  K A  +L F + I   ++Y  L  A  +    P ++ P  +   +       +   +      RV W+V F+A+W     +  P+F  L+ +Y     RF  +D   + E A+   ++T+  +KQLP+L LF SGRE+ R P   +    +     E  +I+ F L++ +  +   ++G
Sbjct:   64 REVEILMFLSAIVMMKNRRAITLEQHAGNLFMFSKVANVILFFRLDIRLGIFYFALCIAFVMTCKPPLYMGPEYIKYFSEKTIDEELNHDT------RVTWIVEFYANWSPECQSFAPVFADLSLKYNCAGLRFGKIDAGRYGEVAQRYKVSTSPLAKQLPSLVLFQSGREVMRRPMVDNKCRAVSWTFSEENIIREFNLNELYEASKKIKKG 270
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Match: UPI0015FAFC08 (thioredoxin-related transmembrane protein 2-like isoform X1 n=2 Tax=Oncorhynchus keta TaxID=8018 RepID=UPI0015FAFC08)

HSP 1 Score: 86.3 bits (212), Expect = 3.490e-16
Identity = 52/204 (25.49%), Postives = 95/204 (46.57%), Query Frame = 1 
Query:  157 QETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYFELDQEF 768
            ++ E++   +A ++ K R+  T ++     F+  K A  +L F + I   ++Y  L  A  +    P ++ P  +   +       +   +      RV W+V F+A+W     +  P+F  L+ +Y     RF  +D   + E A+   ++T+  +KQLPTL LF SGRE+ R P   +    +     E  +I+ F L++ F
Sbjct:   45 RKVEILMFLSAIVMMKNRRAITLEQHAGNLFMFSKVANVILFFRLDIRLGIFYFALCIAFVMTCKPPLYMGPEYIKYFSEKTIDEELNHDT------RVTWIVEFYANWSPQCQSFAPVFAXLSLKYNCAGLRFGKIDAGRYGEVAQRYKVSTSPLAKQLPTLVLFQSGREVMRRPMVDNKCRAVSWTFSEENIIREFNLNELF 242
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FYM6_ECTSI1.650e-18997.41Thioredoxin-like protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JZG0_9PHAE9.650e-6281.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1S3B1_HETAK2.730e-4838.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1X6P1N4_PORUM2.310e-2528.73Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
A0A8B7Y1N7_ACAPL8.730e-2428.91thioredoxin-related transmembrane protein 2-like n... [more]
UPI001AAD9EB82.440e-1825.20thioredoxin-related transmembrane protein 2 n=2 Ta... [more]
A0A6Q2YXK4_ESOLU1.430e-1725.82Thioredoxin domain-containing protein n=3 Tax=Esox... [more]
A0A6I9XCY0_9HYME3.030e-1729.46thioredoxin-related transmembrane protein 2 homolo... [more]
A0A674BB55_SALTR3.390e-1624.41Thioredoxin-related transmembrane protein 2-B-like... [more]
UPI0015FAFC083.490e-1625.49thioredoxin-related transmembrane protein 2-like i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:48116..52561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size813
Model size813
Exons7
Ec32 orthologEc-26_002790.1
Ec32 ortholog descriptionThioredoxin-like protein
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko01000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.3.1.225
EggNOG OGsKOG0914@1,KOG0914@2759
EggNOG free text desc.thioredoxin-related transmembrane protein
KEGG koko:K20030
Preferred nameTMX2
Seed eggNOG ortholog2880.D7FYM6
Seed ortholog evalue3.7e-148
Seed ortholog score530.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936455.1329002-CDS-E-siliculosus-1a_M_contig92:48115..481991622936455.1329002-CDS-E-siliculosus-1a_M_contig92:48115..48199Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 48116..48199 -
1696251086.5610027-CDS-E-siliculosus-1a_M_contig92:48115..481991696251086.5610027-CDS-E-siliculosus-1a_M_contig92:48115..48199Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 48116..48199 -
1622936455.1519487-CDS-E-siliculosus-1a_M_contig92:48433..484971622936455.1519487-CDS-E-siliculosus-1a_M_contig92:48433..48497Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 48434..48497 -
1696251086.5745943-CDS-E-siliculosus-1a_M_contig92:48433..484971696251086.5745943-CDS-E-siliculosus-1a_M_contig92:48433..48497Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 48434..48497 -
1622936455.1701164-CDS-E-siliculosus-1a_M_contig92:48610..487421622936455.1701164-CDS-E-siliculosus-1a_M_contig92:48610..48742Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 48611..48742 -
1696251086.5851572-CDS-E-siliculosus-1a_M_contig92:48610..487421696251086.5851572-CDS-E-siliculosus-1a_M_contig92:48610..48742Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 48611..48742 -
1622936455.1954062-CDS-E-siliculosus-1a_M_contig92:49468..496701622936455.1954062-CDS-E-siliculosus-1a_M_contig92:49468..49670Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 49469..49670 -
1696251086.5993683-CDS-E-siliculosus-1a_M_contig92:49468..496701696251086.5993683-CDS-E-siliculosus-1a_M_contig92:49468..49670Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 49469..49670 -
1622936455.2173898-CDS-E-siliculosus-1a_M_contig92:49873..500451622936455.2173898-CDS-E-siliculosus-1a_M_contig92:49873..50045Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 49874..50045 -
1696251086.6105444-CDS-E-siliculosus-1a_M_contig92:49873..500451696251086.6105444-CDS-E-siliculosus-1a_M_contig92:49873..50045Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 49874..50045 -
1622936455.2353513-CDS-E-siliculosus-1a_M_contig92:50415..504991622936455.2353513-CDS-E-siliculosus-1a_M_contig92:50415..50499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 50416..50499 -
1696251086.619273-CDS-E-siliculosus-1a_M_contig92:50415..504991696251086.619273-CDS-E-siliculosus-1a_M_contig92:50415..50499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 50416..50499 -
1622936455.2565062-CDS-E-siliculosus-1a_M_contig92:52486..525611622936455.2565062-CDS-E-siliculosus-1a_M_contig92:52486..52561Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 52487..52561 -
1696251086.6288629-CDS-E-siliculosus-1a_M_contig92:52486..525611696251086.6288629-CDS-E-siliculosus-1a_M_contig92:52486..52561Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 52487..52561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17249.1prot_E-siliculosus-1a_M_contig92.17249.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 48116..52561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17249.1

>prot_E-siliculosus-1a_M_contig92.17249.1 ID=prot_E-siliculosus-1a_M_contig92.17249.1|Name=mRNA_E-siliculosus-1a_M_contig92.17249.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=271bp
MAGETIVHRRRWARFVHLYYVVNAALVLNYGIVRWYMSAPRLTSQATWTG
FSQETEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIP
HMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGER
VAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAED
LNINTAGTSKQLPTLALFASGREICRLPTFASDGSVIRARMDERGVIKYF
ELDQEFRTTSYSRQGLRGKR*
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mRNA from alignment at E-siliculosus-1a_M_contig92:48116..52561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17249.1 ID=mRNA_E-siliculosus-1a_M_contig92.17249.1|Name=mRNA_E-siliculosus-1a_M_contig92.17249.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4446bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:48116..52561- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCAGGAGAAACTATCGTTCATCGGAGACGATGGGCACGCTTCGTACA
TCTTTACTACGTAGTTAACGCGGCGGTGAGTATATCTTGAGAGTTTTCCT
TAGGAAAGGTTCGTACAGCAGCAGCAACACTTTGTATCAGCGGCACGTAC
TCACTCAGAGCTCGGCACCCCGCGGCTACACCGGGTATCTACTCTCTGAC
AGTCCGTGGAGCGAGCTAGTGACCTGTGAAAGGTTTGGCTTTTGAAGCTC
GACTACTGCACCCACAAGTATTTGCGGAGGTAAATCGTCAGTTGGGATGA
ATGTATACATAACTTGTACTGGTACAGCAGTAGCAGTTTTCGCTTTTACC
GAAACGAGACCCCCCGTCCTGCCGCTTGGAAAGCTACACGGCAGTACAGA
GCTCTATATTACTACTGCTGTGTCACTGGCTGTTAGATGCTGTTATCCGG
TTCTCTCCAGAAATAAACAGCAGTGTCCTATTACTAGATTGGGAGTGTTT
TTGTTCTGTTTTACCCGATTATTTACAGCATCCTTTGCCGACCGATCTCG
ATTTTGACCGAGGTCGAAACTAATGCAGCAACGACCGATTTGCAGCACCC
AATAATGAGACGTTCACGAGACCACGTGCGACCATTCGGGGGAAGTGTAG
CGCAATAAACGAAGAGTGAGCTATCACAATGAACAGCGGTTGGCATTATC
TCCAACAACATATCACGTATTCTGTGCCTACCTTGACACCGTTTCCCTCA
AACCAAGGTAATAAACAGAAATTCGCAAAGCCTAGTCTACACCAGCAGTA
GCTGCATCTTCAAGACAAAACAGGCTACATGGTGGGTGTGCAAACAAGGT
CCAAACAAGGTCATTGCGTTGTGGAGTGCCGACCCGGGCATATATTCCAG
TTAGGAAATCATGGAGCAAGGGCATGCCCGTTGGAACGCCCAGATCTGTT
GCTGGGGCCGTGCTGTCGAAGGCTGCAGCTTCGGTCCGAAAATTCCGCAA
ATCTGGCCGTACCAATTCACGATCCGCTGCTGTACGTACGGTCACAGACC
AATCCCCCGAACTGCGGGCCGTGCAATGCAGCTAGTGGTGTAAGCTACTG
GTGAAGACCAGGAGTTCGGGGGTTTGGATCTGTGACGGCGCGCACAGCAG
TGGATCGTGAACGGTATAGACACAAGAGTTTTTTGCGGACTTTTCGGACA
GCAGCCGCAGCCTTCGACAGCACGGCCCCAGCAGCAACAGATGGGCGTGC
CATGCCATGCTGCTGCCCCATGATGTCCTCTACTGGAATATATCATAGGT
CAGGACTCCACACGCCGGAAGGTCGTTTTGGATACATAGTTTGGCCTGCT
AATATTGGACTTGTATTACAATACAACTGGTTGTCATTGTTGGCAAGAAC
CCTTAACCGTCGGTGTCGTCTCTGTTGTCTGTGAGAAATCCGGTCCGGTC
AGAGGGGGCGCAAATTCGGCGTCCTGTGTAGCTAGTAGACGTCTTCGAAA
ACCGGACTGCTGCAACAGTAGCATCCTAGCTCGTAGCTTACTCGATACGA
AAGGCTCGTTTTGAAAAATCGCGGACCGATCTGTCTTTCCACCGCCAGAG
ATTGGGTAGAACAGCGTCGCACGGGCCTTGCGGATAGGCATGCGCGGGCG
AACCATGGTAATGCTTTGCAATCCAATCTACTCACACACGAGCGGAAGAT
GTTTTTAATACGATGGTAGGTTCGTCAGGAAGCTAGACCTTGGAAAACGT
TTATACTCCGGCTGGTGAGCCCAACATTACACCGAAAAGGGTATAGAATC
TGACTTTCAGGAGGGCGTTCGGCTTGTGAACGCTGTTTGGGATCTCACAC
GTTTCTGGTGCTGCTTTGGGATTTGAACCCACCCTCGGCTGTTCACCGGC
CTTTTTGTTGTCGAACGTTTTGAACAAACAAGATGCCATTATATGGGATT
TGATGGGGAAGCCGATCAATGAGTAAGCGGTGCGAGTCACGCCAACAAAC
ACGGCATGCCGTCGGTGCATAACTTAGTTCCATCACGACGCGCGCTTCTC
CGTTCCGTTTAGCTGGTGCTGAACTATGGCATAGTACGGTGGTACATGTC
TGCGCCTCGGCTTACATCGCAGGCGACTTGGACTGGTTTTTCACAGGTGA
GCACAAACCTGTTTTTGACCATCGAGCTCTATGTATTAGTTGGTGAAGCG
TCGTAGGGAGAGAGTATTTTTGTCCCCCAAGTGACGAAGGGGCTGGGGTA
GGACGGATTGTTGTTCGGTGTACGTCAATTCTTCTTCCACGTGTGTAAAG
CATGGCGTAGGTTCGTTGAAGGTTTATAGCTATAGGTATGAACGGCAGTG
AGTCATTTGCTGCGGGCCTGCTTTTCACCAATAGCCAAGAGTCATCTGGA
CAGCACACGCTGATCTATCTACTCTGATGTTAAGATGGTAGCAAGACATG
CTGTGTGAAGGCACTGGTTGATCCTTCGTGTCTTGTGTTGAAAATCAATT
GCAATCACGTGCGCAGGAAACGGAGGTGATCGGTCTAGCCACAGCTACTC
TGGTCTCGAAGTACCGCAAAATGGCGACGTTCGACGAATTTCTCGCACGG
TTTTTCGTCATCGGAAAGGCTGCTGTGGCAGTGCTCCTGTTTTTCGTGGG
CATCCCCCACATGGTGTGGTACCTCATCCTATGGACAGGTATGCTCCCTG
TATGATACATCCCGTTACGCTCTGGAAGGCATTTGCGATTTGCGGTATCG
GCCAGTATCTGTTTGTTGTTTTGTCCATGGATGAACGCTCGTTGCGTGGT
ATGCATGGCCCGTTTCTTCCACCAAACGGTGCTGTACTGTGGTGAACGAC
TTCTAGTTGGCAACTCCCAACGCGAACCCCGCGCCTCCCAGCTTGTTCGC
TGGTGGTGCCGTACCCCCGTTTCGTGTTGCCCTCAGAAGTTTCAACTCTT
AACCCGGGAGAGTTCCAGTCCATGGTGAGATCATCGTCAGCACAAGCACC
CGGCGAGCGAGTTGCTTGGTTGGTTATGTTCCACGCGGACTGGTGCAGCT
CGAGCCACAACCTGCAGCCAATGTTCGGTGCACTTGCAAGGAGGTGCGTG
CGATGTGGCTTTCGTTTCATGATATTTTGGTTTCGCTGCACCATCGCGAC
GAGAGGATTCGACGAGGGTATAGCGTTTAAGGGCTCCCTCTTGGTTACAG
ATCTGTGTTGCGCAACAAACACCGTTATCAAGCGCTTGAGGGCGCTTTTT
TTCCGGAATTTGCTGCAATGTAGAATTTGCGTTGTCACCCGAACTTTCGT
GAATTGATTGCGTTTTCGCACGGGGATCGGAGAGATGACACGAGGGTGCG
TTTTGTCTTTTTCCTGACCCCGGCAAACCCACTTACAAGGTGAGGTGGCG
TACGACCTCTGGTTACTCCGACAGACTCACACAAGTACACTTTGTCACAA
CGCTTTAGCACGGGCCAACCGTTGCTGCCGTTGGTCCTGTCCCTTGCCCC
GGCCAAAAGTGCGCACCCGCCATCAACTATTATTCGCTGTATCGTTTGTC
AGCGTCGCACGGATAGATAGGAGAGTTCGCACGGTGGTACGATTTCTCCG
ATTCCTTCGGTAAAGGAACTCTGGGTGAATAGGGCTGAAGGTCGTTAATA
TATGAACAATAGGAGTATGCTGCTTGCCCGCCAGAAATCGAACGCGAGGC
AAAGCTGTGAACATGATGTGCGCATTACTGTTATAACGGAAGTTGCGCTA
CAGCTGCTGCTGAACGTCGTGGATGTCGACTCTGGCCTATACTATCCTAT
CCTACTTTTATGGGGTCAGATATGCGGACAAGAATCGGCGGTTTGCAGTT
GTGGATATCGTGGCTCATCCCGAGACGGCTGAAGACCTCAACATCAACAC
GGCCGGGACGAGCAAGCAACTTCCAACCCTGGCACTCTTTGCTTCCGGAA
GGTGGGCCCGGTCCCTTGTTTTTGATGGGTGCGACATGCACTGCTCTCTC
TAGCTGTTTGCATGGTACTGAACTTTGGTGAAAACGTCGCCTCGTTTCAT
TTTCTGTCCATCAGGGAAATTTGCAGGCTGCCGACATTTGCTTCGGATGG
AAGCGTCATTCGGGCTCGAATGGATGAGGTAAGCAGCGGGAGTGATGCAC
ACGTACTACCTCCTGCTGGACGAATATATGCCCCTGTCGGCGGGTCACCC
GACCCAAAATTCCGTGCGTGCCCAGTACTGTCTGTTCTCTACAACCGCAG
GACGTTGGACTTTCTCGCGGAATTGCGGAATTTACTGTGTCCAGGTTCTG
TCCCCACACCGGCGTGCCGCTGCTGTGCCCATCACCGCGTTTGTGTTTTC
CTTTCGCGACAGCGTGGCGTGATCAAGTACTTCGAACTAGACCAAGAGTT
CAGGACAACCAGCTACTCTCGCCAAGGGTTAAGAGGGAAAAGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:48116..52561-

>mRNA_E-siliculosus-1a_M_contig92.17249.1 ID=mRNA_E-siliculosus-1a_M_contig92.17249.1|Name=mRNA_E-siliculosus-1a_M_contig92.17249.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1626bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:48116..52561- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCAGGAGAAACTATCGTTCATCGGAGACGATGGGCACGCTTCGTACA
TCTTTACTACGTAGTTAACGCGGCGATGGCAGGAGAAACTATCGTTCATC
GGAGACGATGGGCACGCTTCGTACATCTTTACTACGTAGTTAACGCGGCG
CTGGTGCTGAACTATGGCATAGTACGGTGGTACATGTCTGCGCCTCGGCT
TACATCGCAGGCGACTTGGACTGGTTTTTCACAGCTGGTGCTGAACTATG
GCATAGTACGGTGGTACATGTCTGCGCCTCGGCTTACATCGCAGGCGACT
TGGACTGGTTTTTCACAGGAAACGGAGGTGATCGGTCTAGCCACAGCTAC
TCTGGTCTCGAAGTACCGCAAAATGGCGACGTTCGACGAATTTCTCGCAC
GGTTTTTCGTCATCGGAAAGGCTGCTGTGGCAGTGCTCCTGTTTTTCGTG
GGCATCCCCCACATGGTGTGGTACCTCATCCTATGGACAGGAAACGGAGG
TGATCGGTCTAGCCACAGCTACTCTGGTCTCGAAGTACCGCAAAATGGCG
ACGTTCGACGAATTTCTCGCACGGTTTTTCGTCATCGGAAAGGCTGCTGT
GGCAGTGCTCCTGTTTTTCGTGGGCATCCCCCACATGGTGTGGTACCTCA
TCCTATGGACAGCTTGTTCGCTGGTGGTGCCGTACCCCCGTTTCGTGTTG
CCCTCAGAAGTTTCAACTCTTAACCCGGGAGAGTTCCAGTCCATGGTGAG
ATCATCGTCAGCACAAGCACCCGGCGAGCGAGTTGCTTGGTTGGTTATGT
TCCACGCGGACTGGTGCAGCTCGAGCCACAACCTGCAGCCAATGTTCGGT
GCACTTGCAAGGAGCTTGTTCGCTGGTGGTGCCGTACCCCCGTTTCGTGT
TGCCCTCAGAAGTTTCAACTCTTAACCCGGGAGAGTTCCAGTCCATGGTG
AGATCATCGTCAGCACAAGCACCCGGCGAGCGAGTTGCTTGGTTGGTTAT
GTTCCACGCGGACTGGTGCAGCTCGAGCCACAACCTGCAGCCAATGTTCG
GTGCACTTGCAAGGAGATATGCGGACAAGAATCGGCGGTTTGCAGTTGTG
GATATCGTGGCTCATCCCGAGACGGCTGAAGACCTCAACATCAACACGGC
CGGGACGAGCAAGCAACTTCCAACCCTGGCACTCTTTGCTTCCGGAAGAT
ATGCGGACAAGAATCGGCGGTTTGCAGTTGTGGATATCGTGGCTCATCCC
GAGACGGCTGAAGACCTCAACATCAACACGGCCGGGACGAGCAAGCAACT
TCCAACCCTGGCACTCTTTGCTTCCGGAAGGGAAATTTGCAGGCTGCCGA
CATTTGCTTCGGATGGAAGCGTCATTCGGGCTCGAATGGATGAGGGAAAT
TTGCAGGCTGCCGACATTTGCTTCGGATGGAAGCGTCATTCGGGCTCGAA
TGGATGAGCGTGGCGTGATCAAGTACTTCGAACTAGACCAAGAGTTCAGG
ACAACCAGCTACTCTCGCCAAGGGTTAAGAGGGAAAAGGTAGCGTGGCGT
GATCAAGTACTTCGAACTAGACCAAGAGTTCAGGACAACCAGCTACTCTC
GCCAAGGGTTAAGAGGGAAAAGGTAG
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