mRNA_E-siliculosus-1a_M_contig92.17247.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17247.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17247.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.570e-26
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 3
Query:  123 CRILQPVVTQKSSSP*APLLTPPAVLCLRFLMREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
            CR+LQPVVTQKS S    L +PPAVLCLRFLMRE+ S  FPLCTHEL  ALST+   EAREKLTLQEKLA AG+RT D      RGYQLD+RGDR
Sbjct:  122 CRLLQPVVTQKSPS----LPSPPAVLCLRFLMREQFSTFFPLCTHEL--ALSTRPGAEAREKLTLQEKLAYAGVRTSDLTSRRFRGYQLDHRGDR 210          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.670e-19
Identity = 57/94 (60.64%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  123 CRILQPVVTQKSSSP*APLLTPPAVLCLRFLMREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGD 404
            CR+LQPVVTQKS  P  P L    V+ + F ++E  S LFPLCTHEL  ALST+   EAREKL +QEKLA AGIRTPD      R YQLD+RGD
Sbjct:   13 CRLLQPVVTQKS--PPLPSLLRYFVVVVVFTLKEF-STLFPLCTHEL--ALSTRPGAEAREKLNVQEKLAYAGIRTPDLTSRRFRSYQLDHRGD 101          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.270e-18
Identity = 48/64 (75.00%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
            MREE S LFPLCTHEL  ALST+   EAREKLTLQEKLA AGIRTPD      RGYQLD+RGDR
Sbjct:    1 MREEFSTLFPLCTHEL--ALSTRPGTEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.380e-16
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLA-CAGIRTPDPGH*NGRGYQLDYRGDR 407
            MREE S LFPLCTHEL  ALST+   EAREKLTLQEKLA CAGIRTPD      RGY+LD++GDR
Sbjct:    1 MREEFSTLFPLCTHEL--ALSTRPGAEAREKLTLQEKLASCAGIRTPDLTSRRFRGYRLDHQGDR 63          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.520e-16
Identity = 49/67 (73.13%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDRQSY 416
            MREE S LFPLCTHEL  ALST+   EAREKLTLQEKLA AGIRTPD      RGYQLD+RGDR S+
Sbjct:    1 MREEFSTLFPLCTHEL--ALSTRPGVEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRLSF 65          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5KCF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.520e-16
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
            MREE S LFPLCTHE  ++  ++AR  AREKLT+QEKLA AGIRTPD      RG+QLD+RGDR
Sbjct:    1 MREEFSTLFPLCTHERALSTISRARAGAREKLTVQEKLAYAGIRTPDLTSRRVRGFQLDHRGDR 64          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.530e-15
Identity = 48/64 (75.00%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
            MREE S LFPLCTHEL  ALST    EAREKLTLQEKLA AGIRTPD      RGYQLD+RGDR
Sbjct:    1 MREEFSTLFPLCTHEL--ALSTGPGAEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5K967_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K967_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.730e-15
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDRQ 410
            MREE S L PLCTH L  ALST++  EAREKLTLQEKLA +GIRTPD      R YQLD++GDRQ
Sbjct:    1 MREEFSTLVPLCTHAL--ALSTRSGAEAREKLTLQEKLAYSGIRTPDLTSRRFRSYQLDHKGDRQ 63          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JZN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.000e-15
Identity = 45/63 (71.43%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGD 404
            MREE S LFPL THEL  ALST+   EAREKLTLQEKLA AG RTPD      RGYQLD+RGD
Sbjct:    1 MREEFSTLFPLRTHEL--ALSTRPGAEAREKLTLQEKLANAGSRTPDLTSKRFRGYQLDHRGD 61          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.150e-14
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  183 TPPAVLCLRFLMREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQ 386
            +PPA+LCLRFL+R E S LF LCTH L  ALST+   EAREKLTLQEKLA AGIRTPD      RGYQ
Sbjct:  829 SPPAILCLRFLLRGEFSTLFTLCTHGL--ALSTRPGAEAREKLTLQEKLAYAGIRTPDLTSRRLRGYQ 894          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYQ0_9PHAE1.570e-2670.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLU5_9PHAE4.670e-1960.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMV9_9PHAE4.270e-1875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFW4_9PHAE2.380e-1672.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L694_9PHAE3.520e-1673.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCF7_9PHAE4.520e-1665.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5P9_9PHAE2.530e-1575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K967_9PHAE2.730e-1567.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZN8_9PHAE3.000e-1571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L041_9PHAE1.150e-1469.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:30298..30959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size153
Model size662
Exons1
Ec32 orthologEc-04_005180.3
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17247.1prot_E-siliculosus-1a_M_contig92.17247.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 30513..30665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936454.576914-UTR-E-siliculosus-1a_M_contig92:30297..305121622936454.576914-UTR-E-siliculosus-1a_M_contig92:30297..30512Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 30298..30512 +
1696251086.2623193-UTR-E-siliculosus-1a_M_contig92:30297..305121696251086.2623193-UTR-E-siliculosus-1a_M_contig92:30297..30512Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 30298..30512 +
1622936454.6087818-UTR-E-siliculosus-1a_M_contig92:30665..309591622936454.6087818-UTR-E-siliculosus-1a_M_contig92:30665..30959Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 30666..30959 +
1696251086.2843418-UTR-E-siliculosus-1a_M_contig92:30665..309591696251086.2843418-UTR-E-siliculosus-1a_M_contig92:30665..30959Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 30666..30959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936454.592013-CDS-E-siliculosus-1a_M_contig92:30512..306651622936454.592013-CDS-E-siliculosus-1a_M_contig92:30512..30665Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 30513..30665 +
1696251086.2736902-CDS-E-siliculosus-1a_M_contig92:30512..306651696251086.2736902-CDS-E-siliculosus-1a_M_contig92:30512..30665Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 30513..30665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17247.1

>prot_E-siliculosus-1a_M_contig92.17247.1 ID=prot_E-siliculosus-1a_M_contig92.17247.1|Name=mRNA_E-siliculosus-1a_M_contig92.17247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=51bp
MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH
*
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mRNA from alignment at E-siliculosus-1a_M_contig92:30298..30959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17247.1 ID=mRNA_E-siliculosus-1a_M_contig92.17247.1|Name=mRNA_E-siliculosus-1a_M_contig92.17247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:30298..30959+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAGAACTCTACGTCAGCGGCAGCAACCCCGTGAGAAACCATTCGTTGGCT AGCGGGATGGACCTATTATTATTGTATATTATTTTTGACTTCACTTCAAT CCATCAGCGCTCACAGCATTTGTGTCGTATACTCCAACCCGTGGTCACAC AGAAGAGTTCCTCTCCCTGAGCCCCCCTACTCACCCCTCCTGCGGTGCTT TGCCTTCGATTTTTAATGCGAGAAGAGTGCAGCATTCTCTTCCCTCTGTG TACACACGAACTACTAATAGCGCTTTCCACCCAGGCCAGGAAGGAAGCGA GAGAAAAACTCACTTTGCAAGAAAAGCTCGCTTGCGCCGGAATTCGAACC CCTGACCCTGGCCACTAGAACGGTCGAGGGTACCAACTAGACTACCGGGG AGACCGGCAGTCTTATGGCCCTGGAAAATACTCCTCGAACCAACATCAAC GCCACCACAACATGACAGGTGGTACTTATCGCTCCTGTTCACTTCGCTCT GCTGTGATTAACCTACCACGCACTCTGTCTAAATAGCTCCGAGTGTTAGA TACGCGCATGTACTGTATGGCGCTAGCACGCCCAACCAACACAGACTGGG TAGGCGGTGAAGCCCAGATAACTGCGTCCGGATGGTAGCTGAGCGTATGC ATACATACGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:30298..30959+

>mRNA_E-siliculosus-1a_M_contig92.17247.1 ID=mRNA_E-siliculosus-1a_M_contig92.17247.1|Name=mRNA_E-siliculosus-1a_M_contig92.17247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:30298..30959+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGAGAAGAGTGCAGCATTCTCTTCCCTCTGTGTACACACGAACTACT
AATAGCGCTTTCCACCCAGGCCAGGAAGGAAGCGAGAGAAAAACTCACTT
TGCAAGAAAAGCTCGCTTGCGCCGGAATTCGAACCCCTGACCCTGGCCAC
TAGATGCGAGAAGAGTGCAGCATTCTCTTCCCTCTGTGTACACACGAACT
ACTAATAGCGCTTTCCACCCAGGCCAGGAAGGAAGCGAGAGAAAAACTCA
CTTTGCAAGAAAAGCTCGCTTGCGCCGGAATTCGAACCCCTGACCCTGGC
CACTAG
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