mRNA_E-siliculosus-1a_M_contig92.17247.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.570e-26 Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 3
Query: 123 CRILQPVVTQKSSSP*APLLTPPAVLCLRFLMREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
CR+LQPVVTQKS S L +PPAVLCLRFLMRE+ S FPLCTHEL ALST+ EAREKLTLQEKLA AG+RT D RGYQLD+RGDR
Sbjct: 122 CRLLQPVVTQKSPS----LPSPPAVLCLRFLMREQFSTFFPLCTHEL--ALSTRPGAEAREKLTLQEKLAYAGVRTSDLTSRRFRGYQLDHRGDR 210
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 4.670e-19 Identity = 57/94 (60.64%), Postives = 65/94 (69.15%), Query Frame = 3
Query: 123 CRILQPVVTQKSSSP*APLLTPPAVLCLRFLMREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGD 404
CR+LQPVVTQKS P P L V+ + F ++E S LFPLCTHEL ALST+ EAREKL +QEKLA AGIRTPD R YQLD+RGD
Sbjct: 13 CRLLQPVVTQKS--PPLPSLLRYFVVVVVFTLKEF-STLFPLCTHEL--ALSTRPGAEAREKLNVQEKLAYAGIRTPDLTSRRFRSYQLDHRGD 101
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 4.270e-18 Identity = 48/64 (75.00%), Postives = 50/64 (78.12%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
MREE S LFPLCTHEL ALST+ EAREKLTLQEKLA AGIRTPD RGYQLD+RGDR
Sbjct: 1 MREEFSTLFPLCTHEL--ALSTRPGTEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW4_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.380e-16 Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLA-CAGIRTPDPGH*NGRGYQLDYRGDR 407
MREE S LFPLCTHEL ALST+ EAREKLTLQEKLA CAGIRTPD RGY+LD++GDR
Sbjct: 1 MREEFSTLFPLCTHEL--ALSTRPGAEAREKLTLQEKLASCAGIRTPDLTSRRFRGYRLDHQGDR 63
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 3.520e-16 Identity = 49/67 (73.13%), Postives = 52/67 (77.61%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDRQSY 416
MREE S LFPLCTHEL ALST+ EAREKLTLQEKLA AGIRTPD RGYQLD+RGDR S+
Sbjct: 1 MREEFSTLFPLCTHEL--ALSTRPGVEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRLSF 65
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5KCF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF7_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 4.520e-16 Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
MREE S LFPLCTHE ++ ++AR AREKLT+QEKLA AGIRTPD RG+QLD+RGDR
Sbjct: 1 MREEFSTLFPLCTHERALSTISRARAGAREKLTVQEKLAYAGIRTPDLTSRRVRGFQLDHRGDR 64
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.530e-15 Identity = 48/64 (75.00%), Postives = 49/64 (76.56%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDR 407
MREE S LFPLCTHEL ALST EAREKLTLQEKLA AGIRTPD RGYQLD+RGDR
Sbjct: 1 MREEFSTLFPLCTHEL--ALSTGPGAEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5K967_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K967_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.730e-15 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGDRQ 410
MREE S L PLCTH L ALST++ EAREKLTLQEKLA +GIRTPD R YQLD++GDRQ
Sbjct: 1 MREEFSTLVPLCTHAL--ALSTRSGAEAREKLTLQEKLAYSGIRTPDLTSRRFRSYQLDHKGDRQ 63
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5JZN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN8_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 3.000e-15 Identity = 45/63 (71.43%), Postives = 47/63 (74.60%), Query Frame = 3
Query: 216 MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQLDYRGD 404
MREE S LFPL THEL ALST+ EAREKLTLQEKLA AG RTPD RGYQLD+RGD
Sbjct: 1 MREEFSTLFPLRTHEL--ALSTRPGAEAREKLTLQEKLANAGSRTPDLTSKRFRGYQLDHRGD 61
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.150e-14 Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 3
Query: 183 TPPAVLCLRFLMREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGH*NGRGYQ 386
+PPA+LCLRFL+R E S LF LCTH L ALST+ EAREKLTLQEKLA AGIRTPD RGYQ
Sbjct: 829 SPPAILCLRFLLRGEFSTLFTLCTHGL--ALSTRPGAEAREKLTLQEKLAYAGIRTPDLTSRRLRGYQ 894 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig92.17247.1 >prot_E-siliculosus-1a_M_contig92.17247.1 ID=prot_E-siliculosus-1a_M_contig92.17247.1|Name=mRNA_E-siliculosus-1a_M_contig92.17247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=51bp MREECSILFPLCTHELLIALSTQARKEAREKLTLQEKLACAGIRTPDPGHback to top mRNA from alignment at E-siliculosus-1a_M_contig92:30298..30959+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig92.17247.1 ID=mRNA_E-siliculosus-1a_M_contig92.17247.1|Name=mRNA_E-siliculosus-1a_M_contig92.17247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:30298..30959+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:30298..30959+ >mRNA_E-siliculosus-1a_M_contig92.17247.1 ID=mRNA_E-siliculosus-1a_M_contig92.17247.1|Name=mRNA_E-siliculosus-1a_M_contig92.17247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:30298..30959+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |