mRNA_E-siliculosus-1a_M_contig92.17245.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI) HSP 1 Score: 931 bits (2407), Expect = 0.000e+0 Identity = 494/507 (97.44%), Postives = 497/507 (98.03%), Query Frame = 1
Query: 160 MPSNAKTQVHNGIDMATKLSHVQGMGPKSADMSEGGVAKXXXXXXXXXXXXXXQKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGQPRDTGAGEGNDDLENGAKKEEATGSGGTHESASLAEHPLQSAVTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPEMAPEVVGRIESGAKRRLIGLSPRGMTTSTRNARARVAHVLDDEVMVEMDSHSLLGYRLVS 1680
MPSNAKTQV NGIDMATKLSHVQGMGPKSAD+SEGGVAKXXXXXXXXXXXXXXQKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHG PRDTGAGEGNDDLENGAKKEEA GSGGTHESASLAEHPLQSAVTSFD ALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPE LPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAA GDCRKPPPASNGG ELKLERRS+V MDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTP MAPEVVGRIESGAKRRL+GLSPRGMTTST NARARVAHVLDDEVMVEMDSHSLLGYRLVS
Sbjct: 1 MPSNAKTQVQNGIDMATKLSHVQGMGPKSADVSEGGVAKXXXXXXXXXXXXXXQKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGHPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAAGDCRKPPPASNGGAELKLERRSDVRMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGAKRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLVS 507
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: D0MYT7_PHYIT (Mediator of RNA polymerase II transcription subunit 17 n=18 Tax=Phytophthora TaxID=4783 RepID=D0MYT7_PHYIT) HSP 1 Score: 97.1 bits (240), Expect = 1.030e-16 Identity = 143/591 (24.20%), Postives = 243/591 (41.12%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRL---QHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPEMAPEVVGRIESGAKRRLIGLSPRGMTTSTRNARARVAHVLDDEVMVEMDSHSLLGYRLVSGESPSSGWSGRPGSGSPAKGGTCPEDDRSKGPMMTRSASLCQLALLYCGSLIREQQRTQEVAGTVVSSKSPVSREVGAWISAESGGSTTGG----ASTGGRLSAASTWKSVGRVLLHHLFRSEVVQGLANVSR--SMQKI-----------GL--PL--AVRWTHLEETYRTSALTLTVGHCFHFRASLDDGCGIVVSALPGLQNHADQRSVELQSAQDLEHFLLREVCRQIVL 2319
V A+ EL+QL++ +DL R +F+ ++ R + + +A E L LV K++Q+K + L + + L +T + + VF QG+ + + W+I AP HG + P + GEPL+VDCS+GSAG VP T + +L+ E G + + +A +++L + TG +F S AE D KLE E L E+++S L Q SVF EE+F TL EAL W + I A ++ G S+ + V HVLDDE+ + ++ L +LV +S S P + T + D + +T++ C+ LL IR + ++++ ++ + S +S G +++ + G+ G + T + T +V VL H+L ++EV + L VS + QK+ GL P+ +VR ++ ++T A T+ F + +++S L E+ + L F+ VC Q+ L
Sbjct: 116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVEAKQAQVKESGAILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFVPQTRSIADLA----YAELSRTEKGLVRVKTPEDFLARAIQIKLEAKDTGK-----EGAFTLPSPHLVPMTKAEMD--------------KLEDTPEDLKTLEERNVSILKAVQFSVFCEELFCTLMKEAL-QNTSKWT-----------------------DTAYNISKYAVKK------HGRDDSSTDTHISVLHVLDDEIQLRVNERYHLTIKLVDVKSLSKNKD--PRRAASISYSTPADSDEA---FLTQT---CRYTLLLLQQEIRTRHGRKDISRALLYTGSDISTTSGGGVNSSNSGAGAAGMGPASETDKHDNTPGTLATVLTVLAHNLLKNEVGRYLDEVSSVLAFQKLQSSASGRVLDDGLLQPICDSVRGVYVSPRWKTCAFDSTLS-AFDLNVGKNFSTEVLISGARILLQTGMASQREVSGVEGLREFVETTVCSQVAL 629
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A0P1A5X6_PLAHL (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5X6_PLAHL) HSP 1 Score: 93.2 bits (230), Expect = 1.680e-15 Identity = 80/268 (29.85%), Postives = 131/268 (48.88%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTG-MCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELK-LERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1416
V A+ EL+QL++ +DL R EF+ ++ R + + +A + E L +V KR+Q+K + L + K + +T K + VF G+ H+ + W+I APNHG + P + GEPL+VDCS+GSAG VP + + +L+ E G + + + ++ L + +TG + +++L FP + RT+ D N +LK LE R+ ++ +Q SVF EE+F TL EAL
Sbjct: 112 VIELQAAVAELHQLINSIDLIRRREFL----------EEMRCIRENTA-----LQKEELEHVVESKRAQVKESGTILLDGVKTIAKTVKKESVFFLGITHMLRKWKICAPNHGNIPKPFRAGEPLAVDCSYGSAGSSFVPQSQSIADMA----YAELSRTERGFVRVKTPENFLARTIQLTLKAKETGKLGKYTL--PFPTLIN-VTRTEMDASD--------NTPEDLKVLEERNLSIL-------KAVQFSVFCEELFYTLMKEAL 342
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A484EDK9_BRELC (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDK9_BRELC) HSP 1 Score: 84.7 bits (208), Expect = 7.100e-13 Identity = 79/274 (28.83%), Postives = 122/274 (44.53%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEA------QPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEALVD 1422
V+ A EL+QL++ +DL R EF+ ++ R + + +A E L +V KR+ +K + L + L +T + + +F QGV + ++W+I AP HG + P + GEPL+VDCS+GSAG VP +H + L E R E P N + +++L++ TG + S E D PA +LK VL + E + +Q S+F EE+F TL EAL D
Sbjct: 114 VSELQAATAELHQLINSIDLIRRHEFL----------EEMRCIRENTAPKR-----EELEYVVEAKRAHVKESGSILLNGVQALAKTVEKESIFFQGVTEMLRNWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSLFVP---------QHRSIADLAYAELSRTEKGLILVKTPENFLA-RTIQLKLIAKDTGK-----EGKYTLPSPPLLHKTKTEMDKLDDKPA-----DLK------VLSNRNESILKAVQFSIFCEELFYTLMKEALHD 346
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A3M6V7J4_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7J4_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.230e-12 Identity = 74/266 (27.82%), Postives = 117/266 (43.98%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1416
V A+ EL+QL++ +DL R +F+ ++ R + + +A E L LV K +Q+K + L + L +T + + VF QG++ + + W+I AP HG + P + GEPL+VDCS+GSAG VP + + L E R E + + F + + ++ + S+ S AE D P +++ ER VL +Q SVF EE+F TL EAL
Sbjct: 119 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVESKSAQVKESGTILLNGVEALAKTVEKESVFFQGIIQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSSFVPQNRS---------IADLAYAELSRTEKGLVRAKTPEDFLTRTIQLKLEANDIGKEGSYTLPSPTLIHMTKAELDGLHDTPED---LKVLEERNMSVL--------KAVQFSVFCEELFYTLMKEAL 349
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: H3GXL2_PHYRM (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXL2_PHYRM) HSP 1 Score: 83.6 bits (205), Expect = 1.560e-12 Identity = 84/269 (31.23%), Postives = 119/269 (44.24%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRL---QHSVFWEEVFETLKAEAL 1416
V A+ EL+QL++ +DL R +F+ ++ R + + +A E L LV K Q+K ++ L + + L +T + + VF QG+ H+ + W+I AP HG + P + GEPL+VDCS+GSAG P T + + L E R E +GL +RA P D RT AE D KLE E L E++IS L Q SVF EE+F TL EAL
Sbjct: 117 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVESKSEQVKESSTILLDGVEALAKTVEKESVFFQGITHMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFAPQTRS---------IADLAYAELSRTE------KGL------------------VRAKTP--EDFLARTIQAEMD--------------KLEDTPEDLKILEERNISVLKAVQFSVFCEELFYTLMKEAL 321
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A3F2S100_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S100_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.620e-12 Identity = 74/266 (27.82%), Postives = 116/266 (43.61%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1416
V A+ EL+QL++ +DL R +F+ ++ R + + +A E L LV K +Q+K L + + L +T + + VF QG+ + + W+I AP HG + P + GEPL+VDCS+GSAG P T + + +L E R E + + F + + ++ ++ S AE D + P +E ER VL +Q SVF EE+F TL EAL
Sbjct: 121 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKECGTILMDGVEELAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSIFAPQTRS---------IAELAFAELNRTEKGLVRVKTPEDFLTRTIQLKLEATGSGTEGNYTLPSPTVITMTKAEMDKLENTPEDQKILE---ERNVSVL--------KAVQFSVFCEELFYTLMKEAL 351
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A6A3Z337_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z337_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.120e-12 Identity = 72/266 (27.07%), Postives = 117/266 (43.98%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAEGDCRKPPPASNGGVELKLERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1416
V A+ EL+QL++ +DL R +F+ ++ R + + +A E L LV K +Q+K + L + + L +T + + VF QG+ + + W+I AP HG + P + GEPL+VDCS+GSAG P T + + L E R E + + F + + ++ + ++ A+ D + P V++ ER VL +Q SVF EE+F TL EAL
Sbjct: 118 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVEAKSAQVKESGTILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSIFAPQTRS---------IADLAYAELSRTEKGLVRVKTPEDFLTRTIQLRLEATDTGKEGNYTLPPPHLIHMTKADMDALEDTPED---VKILEERNVSVLR--------AVQFSVFCEELFYTLMKEAL 348
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A6H5K482_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K482_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 5.510e-12 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -3
Query: 2788 VQAWGCTLIGLIWLGLFARRVQRMQDLPAQAWVVSTKSN 2904
VQAWGCTLIGLIWLG FARRVQRMQDLPA+AW+VSTKSN
Sbjct: 519 VQAWGCTLIGLIWLGFFARRVQRMQDLPAEAWIVSTKSN 557
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Match: A0A2P4Y3J1_9STRA (Mediator of RNA polymerase II transcription subunit 17 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3J1_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 4.690e-11 Identity = 47/142 (33.10%), Postives = 75/142 (52.82%), Query Frame = 1
Query: 619 VTSFDKALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPETLPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFT 1044
V A+ EL+QL++ +DL R +F+ ++ R + + +A E L LV K +Q+K + L + + L +T + + VF G+ + + W+I AP HG + P + GEPL+VDCS+GSAG VP T
Sbjct: 116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKESGTILLDGVEALAKTVETESVFFHGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSTFVPQT 242 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig92.17245.1 >prot_E-siliculosus-1a_M_contig92.17245.1 ID=prot_E-siliculosus-1a_M_contig92.17245.1|Name=mRNA_E-siliculosus-1a_M_contig92.17245.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=859bp MPSNAKTQVHNGIDMATKLSHVQGMGPKSADMSEGGVAKPKSAEKDENGVback to top mRNA from alignment at E-siliculosus-1a_M_contig92:16098..21605+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig92.17245.1 ID=mRNA_E-siliculosus-1a_M_contig92.17245.1|Name=mRNA_E-siliculosus-1a_M_contig92.17245.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5508bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:16098..21605+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:16098..21605+ >mRNA_E-siliculosus-1a_M_contig92.17245.1 ID=mRNA_E-siliculosus-1a_M_contig92.17245.1|Name=mRNA_E-siliculosus-1a_M_contig92.17245.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5154bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:16098..21605+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |