mRNA_E-siliculosus-1a_M_contig92.17243.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17243.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17243.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: D7FYM1_ECTSI (NLE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM1_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 1.580e-119
Identity = 181/218 (83.03%), Postives = 183/218 (83.94%), Query Frame = 1
Query:    1 MLASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALSKFTPEEAQAVALERYNLAR 654
            MLASGGGDMTVRFWDVQTSLPRFTCR                               PSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKV    WNVEGEGRKLGILVRTLVGHGHRVNTLALSCEA+LRTGPFGKEECALKA+SKFTPEEAQAVALERYNLAR
Sbjct:  169 MLASGGGDMTVRFWDVQTSLPRFTCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKV----WNVEGEGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTPEEAQAVALERYNLAR 382          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: A0A7S2V738_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V738_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.900e-89
Identity = 126/176 (71.59%), Postives = 140/176 (79.55%), Query Frame = 1
Query:   13 GGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCE 540
            GGGD TVRFWD  T +PR TCRGH+HHVLCTAW+P+G+RFASADRKGEI LW+P  G   G PL  HKQWVT L+WEPLHRN   ER+ASSSKD  +KIWNTRTGRCE++LSGH  SVE + WGGEGLLYSASRDRTIKV    W VE  G+    LVRTLVGHGHRVNTLALS +
Sbjct:    1 GGGDTTVRFWDTNTCMPRRTCRGHKHHVLCTAWSPDGRRFASADRKGEIILWNPDSGEMVGTPLKGHKQWVTYLSWEPLHRNPRAERMASSSKDTTVKIWNTRTGRCELSLSGHTQSVECVKWGGEGLLYSASRDRTIKV----WAVEDRGQ----LVRTLVGHGHRVNTLALSSD 168          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: A0A836CH64_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH64_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.860e-81
Identity = 133/217 (61.29%), Postives = 149/217 (68.66%), Query Frame = 1
Query:    4 LASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALSKFTPEEAQAVALERYNLAR 654
            LASGGGDMTVRFWDV T  PRFTCR                               P+ G   G PL +HKQWVTSL+WEP+H+N+A ERLASSSKD L+K+WN RTGRC VTLSGHADSVE + WGGEGLLYSASRDR    N+ VW+++GEGRK GILVRTL GHGHRVNTLALSCE  LRTGPFG      K ++  TPEEAQA AL RY  A+
Sbjct:  163 LASGGGDMTVRFWDVNTCTPRFTCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATGQPIGSPLVSHKQWVTSLSWEPMHKNAACERLASSSKDGLVKVWNVRTGRCLVTLSGHADSVECVKWGGEGLLYSASRDR----NIMVWSMDGEGRKFGILVRTLAGHGHRVNTLALSCEYVLRTGPFGH-----KPVTFATPEEAQAAALARYQEAK 370          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: K0TNB6_THAOC (NLE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNB6_THAOC)

HSP 1 Score: 258 bits (660), Expect = 4.700e-80
Identity = 114/184 (61.96%), Postives = 140/184 (76.09%), Query Frame = 1
Query:   13 GGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPF 564
            GGGD TVRFWDV TS PR TCRGH+ HVLCT+W+P+G RFAS D++G + LWDP+KG   G  + AH +W+T +AWEP+H N++ ERL ++SKD   K+WNTRT RCE T+SGH DS+E + WGGEGL+Y+ASRDRTIKV    WN      + G+LVRTL GHGHRVN LALSC+   RTGPF
Sbjct:  203 GGGDATVRFWDVNTSTPRHTCRGHKDHVLCTSWSPDGLRFASGDKRGNLILWDPTKGTASG-TIKAHSKWITGMAWEPMHSNASCERLVTASKDGHAKVWNTRTRRCEATMSGHLDSIEGVRWGGEGLVYTASRDRTIKV----WNANEAKGRTGLLVRTLTGHGHRVNALALSCDYVCRTGPF 381          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: UPI0010A032B1 (notchless protein homolog 1-like n=1 Tax=Grammomys surdaster TaxID=491861 RepID=UPI0010A032B1)

HSP 1 Score: 215 bits (547), Expect = 5.130e-66
Identity = 108/218 (49.54%), Postives = 138/218 (63.30%), Query Frame = 1
Query:    4 LASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALS-KFTPEEAQAVALERYNLAR 654
            LASG GD TVRFWD+ T  P FTC+GHRH VL  +W+P+GK+ AS  + G+I LWDPS G+Q G+ L+ H         EPLH N     +ASSSKD  +++W+T  GRCE  L+GH  SV  + WGG+GLLYSAS+DRTIKV    W         G+L RTL GHGH VNT+ALS + +LRTG F   +  + A   + + +E +  A  RYNL R
Sbjct:   39 LASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGMQVGRTLTGHXXXXXXXXXEPLHMNPECRYVASSSKDGSVRVWDTTAGRCEQILTGHTQSVTCLRWGGDGLLYSASQDRTIKV----WRAHD-----GVLCRTLQGHGHWVNTMALSTDYALRTGAFEPADATVNAQDLQGSLKELKERASSRYNLVR 247          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: G1N4Q4_MELGA (Uncharacterized protein n=11 Tax=Neognathae TaxID=8825 RepID=G1N4Q4_MELGA)

HSP 1 Score: 210 bits (535), Expect = 5.350e-63
Identity = 107/218 (49.08%), Postives = 137/218 (62.84%), Query Frame = 1
Query:    4 LASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALSKF-TPEEAQAVALERYNLAR 654
            LASG GD TVRFWD+ T  P+FT +GHRH VL  AW+P+GK+ AS  +  +I LWDP+ G Q G+ L+ H +W+T L WEPLH N     LAS+SKD  I+IW+T  GRC+  L+ H  SV  + WGG+GLLYS+S+DRTIKV    W  +      GIL RTL GH H VNT+ALS +  LRTG F   E  +       +  E +  A +RY+  R
Sbjct:   60 LASGSGDTTVRFWDLSTETPQFTAKGHRHWVLSIAWSPDGKKLASGCKNSQIFLWDPATGNQIGRVLTGHSKWITCLCWEPLHINPECRYLASASKDGSIRIWDTLMGRCDKILTSHTQSVTCVKWGGDGLLYSSSQDRTIKV----WRSQD-----GILCRTLQGHAHWVNTMALSTDYVLRTGAFEPAEATINPQDMSGSLAELKDKAQQRYDKVR 268          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: A0A7S3XZG7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZG7_HETAK)

HSP 1 Score: 211 bits (537), Expect = 3.680e-62
Identity = 117/217 (53.92%), Postives = 133/217 (61.29%), Query Frame = 1
Query:    4 LASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAG--ERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALSKF-TPEEAQAVALERYN 645
            LASGGGD  VRFWDV T LP+ T                                 P+    QGQPL+ H+QWVTSLAWEPLHR      ERLAS+SKD   KIWN RTGRCE++LSGH DSVE + WGGEGL+Y+ASRDRTIKV    W+ +  G KLG LVRTLVGHGHRVNTLALS +  LRTGPF          ++F +PE A   A ERYN
Sbjct:  169 LASGGGDGAVRFWDVHTCLPKHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASARPQGQPLTGHRQWVTSLAWEPLHRRRPHPCERLASASKDGTCKIWNVRTGRCEISLSGHTDSVECVKWGGEGLIYTASRDRTIKV----WDAD-VGPKLGTLVRTLVGHGHRVNTLALSSDYVLRTGPFDHHG------NRFASPEAAADAAEERYN 374          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: A0A482SD67_9ARCH (NLE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SD67_9ARCH)

HSP 1 Score: 211 bits (538), Expect = 6.430e-62
Identity = 111/214 (51.87%), Postives = 132/214 (61.68%), Query Frame = 1
Query:    4 LASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALSKFTPEEAQAVALERYN 645
            LASGGGDMTVRFW+V T+LP  TC                                   G Q+GQPL  HK+WVT+LA+EPLH N+   R+ASSSKD  +KIWN  TG CE T+SGHADSVE + WGG GLLY+ASRDRTI+V    W V+G GR   +LVRTLVGH HR+NTLAL+ +   RTG F   +      +  TPEEAQ VAL+RY 
Sbjct:  212 LASGGGDMTVRFWNVITNLPMHTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGTQRGQPLRGHKKWVTALAFEPLHLNAHSTRMASSSKDQTVKIWNLSTGLCESTISGHADSVECVKWGGTGLLYTASRDRTIRV----WAVDGHGRSQHMLVRTLVGHAHRINTLALNTDYLFRTGSFELAQ----TNANLTPEEAQQVALKRYQ 417          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: B7G8X7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8X7_PHATC)

HSP 1 Score: 204 bits (519), Expect = 2.660e-59
Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 MLASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSA 408
            MLASGGGD TVRFWDV TS P++TC+ H++HVLC AWAPNGKRF SAD+ G   +WDP+KG   G+ + AH+QW+TSLAWEP+H N+A +RLA+SSKD  IKIWN RT    +TLSGH DSVE I W G+G LYSA
Sbjct:  199 MLASGGGDTTVRFWDVHTSTPKYTCKQHKNHVLCVAWAPNGKRFVSADKNGVWIVWDPTKGEAVGKAVKAHRQWITSLAWEPMHLNAACDRLATSSKDGTIKIWNVRTQAQNLTLSGHTDSVESIKWSGDGFLYSA 334          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Match: A0A3Q7MK11_CALUR (notchless protein homolog 1 isoform X2 n=17 Tax=Eutheria TaxID=9347 RepID=A0A3Q7MK11_CALUR)

HSP 1 Score: 200 bits (508), Expect = 1.330e-58
Identity = 100/218 (45.87%), Postives = 130/218 (59.63%), Query Frame = 1
Query:    4 LASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRKGEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDALIKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWNVEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALS-KFTPEEAQAVALERYNLAR 654
            LASG GD TVRFWD+ T  P FTC+GHRH VL  +W+P+GK+ AS  + G+I LWDPS G Q G+ L+ H +W+T L+WEPLH N A   +ASSSKD  +++W+T  GRCE  L+GH  SV  + WGG+GLLYSA                                GH VNT+ALS + +LRTG F   E ++ A   + + +E +  AL RYNL R
Sbjct:   95 LASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSRWITGLSWEPLHANPACRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSAXXXXXXXXXXXXXXXXXXXXXXX---------GHWVNTMALSTDYALRTGAFEPAEASVNAQDLQGSLQELKDGALRRYNLVR 303          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYM1_ECTSI1.580e-11983.03NLE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V738_9STRA1.900e-8971.59Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CH64_9STRA1.860e-8161.29WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
K0TNB6_THAOC4.700e-8061.96NLE domain-containing protein n=1 Tax=Thalassiosir... [more]
UPI0010A032B15.130e-6649.54notchless protein homolog 1-like n=1 Tax=Grammomys... [more]
G1N4Q4_MELGA5.350e-6349.08Uncharacterized protein n=11 Tax=Neognathae TaxID=... [more]
A0A7S3XZG7_HETAK3.680e-6253.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482SD67_9ARCH6.430e-6251.87NLE domain-containing protein n=1 Tax=archaeon Tax... [more]
B7G8X7_PHATC2.660e-5965.44Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A3Q7MK11_CALUR1.330e-5845.87notchless protein homolog 1 isoform X2 n=17 Tax=Eu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:3665..5244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size657
Model size657
Exons5
Ec32 orthologEc-26_002740.1
Ec32 ortholog descriptionG-protein, beta subunit
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03009,ko03036,ko04147,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0271@1,KOG0271@2759
EggNOG free text desc.ribosomal large subunit assembly
GOsGO:0000027,GO:0000151,GO:0001501,GO:0001655,GO:0001701,GO:0001756,GO:0001822,GO:0001824,GO:0001825,GO:0001826,GO:0003002,GO:0003674,GO:0003779,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005840,GO:0005856,GO:0005884,GO:0005938,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007346,GO:0007389,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0009553,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009892,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010564,GO:0010605,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0015629,GO:0016043,GO:0019222,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030036,GO:0030042,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030479,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030863,GO:0030864,GO:0031323,GO:0031324,GO:0031333,GO:0031461,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032271,GO:0032272,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032991,GO:0033043,GO:0034622,GO:0035282,GO:0042254,GO:0042255,GO:0042273,GO:0042592,GO:0042641,GO:0042643,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043281,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045786,GO:0045861,GO:0045930,GO:0048229,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051261,GO:0051302,GO:0051336,GO:0051346,GO:0051493,GO:0051494,GO:0051495,GO:0051693,GO:0051716,GO:0051726,GO:0051782,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0060828,GO:0061053,GO:0061484,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0071944,GO:0072001,GO:0080008,GO:0080090,GO:0090066,GO:0090263,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:1990904,GO:2000116,GO:2000117,GO:2001233,GO:2001234,GO:2001267,GO:2001268
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
KEGG koko:K07375,ko:K14855
Preferred nameNLE1
Seed eggNOG ortholog2880.D7FYM1
Seed ortholog evalue9.3e-97
Seed ortholog score359.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17243.1prot_E-siliculosus-1a_M_contig92.17243.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 3665..5244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936453.4988685-CDS-E-siliculosus-1a_M_contig92:3664..38801622936453.4988685-CDS-E-siliculosus-1a_M_contig92:3664..3880Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 3665..3880 -
1696251085.86533-CDS-E-siliculosus-1a_M_contig92:3664..38801696251085.86533-CDS-E-siliculosus-1a_M_contig92:3664..3880Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 3665..3880 -
1622936453.5233438-CDS-E-siliculosus-1a_M_contig92:4178..43131622936453.5233438-CDS-E-siliculosus-1a_M_contig92:4178..4313Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 4179..4313 -
1696251085.8791645-CDS-E-siliculosus-1a_M_contig92:4178..43131696251085.8791645-CDS-E-siliculosus-1a_M_contig92:4178..4313Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 4179..4313 -
1622936453.544461-CDS-E-siliculosus-1a_M_contig92:4541..47261622936453.544461-CDS-E-siliculosus-1a_M_contig92:4541..4726Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 4542..4726 -
1696251085.8894851-CDS-E-siliculosus-1a_M_contig92:4541..47261696251085.8894851-CDS-E-siliculosus-1a_M_contig92:4541..4726Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 4542..4726 -
1622936453.5658739-CDS-E-siliculosus-1a_M_contig92:4883..49691622936453.5658739-CDS-E-siliculosus-1a_M_contig92:4883..4969Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 4884..4969 -
1696251085.9000142-CDS-E-siliculosus-1a_M_contig92:4883..49691696251085.9000142-CDS-E-siliculosus-1a_M_contig92:4883..4969Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 4884..4969 -
1622936453.5842257-CDS-E-siliculosus-1a_M_contig92:5209..52441622936453.5842257-CDS-E-siliculosus-1a_M_contig92:5209..5244Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 5210..5244 -
1696251085.9110875-CDS-E-siliculosus-1a_M_contig92:5209..52441696251085.9110875-CDS-E-siliculosus-1a_M_contig92:5209..5244Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 5210..5244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17243.1

>prot_E-siliculosus-1a_M_contig92.17243.1 ID=prot_E-siliculosus-1a_M_contig92.17243.1|Name=mRNA_E-siliculosus-1a_M_contig92.17243.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=219bp
MLASGGGDMTVRFWDVQTSLPRFTCRGHRHHVLCTAWAPNGKRFASADRK
GEIRLWDPSKGVQQGQPLSAHKQWVTSLAWEPLHRNSAGERLASSSKDAL
IKIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVNLGVWN
VEGEGRKLGILVRTLVGHGHRVNTLALSCEASLRTGPFGKEECALKALSK
FTPEEAQAVALERYNLAR*
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mRNA from alignment at E-siliculosus-1a_M_contig92:3665..5244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17243.1 ID=mRNA_E-siliculosus-1a_M_contig92.17243.1|Name=mRNA_E-siliculosus-1a_M_contig92.17243.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1580bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:3665..5244- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTTGCAAGCGGGGGCGGAGATATGACCGTGAGGTGAGTTCGACGCCT GTCGGGCCTATGCCGTACCATGGTGTCGTTTTCTGTGTAGATCTGCCGCT GCTTGCGCTCTCAACGCTTCGACCGGAGTTGGGTGTTTTGTCGGAGCTAT CGTGGCTCTCGCGTCTTGGTTGCTCTCCACGTCGTCTCCCGGTACGTACC GCCGTAGCATACGTGCGATGCCCCACGTGTACTTCCTCCCTGCTTCCCCC ACACCCTTGTCAATCAACTCTGCAGGTTTTGGGACGTGCAGACATCCCTT CCTCGCTTCACATGTAGAGGGCATCGCCACCATGTCCTATGCACCGCGTG GGCGCCAAACGGTGGGTCGTGCGCCTTGAGGCTCCAAGAGGCGTTAGTCT CCCTAGTGCAGCCATCAGTTTTGATATCGGTTTTGTTATCCGTTCAGAAT GTGAAACGCACAACGCCGTACTTATCCATGGCTGCATGTTTCATTTTTGT TGTGGGTTTGCTCGCCAGGGAAACGTTTCGCGTCTGCCGACAGGAAGGGC GAGATTCGGCTATGGGACCCCTCGAAGGGGGTGCAGCAGGGCCAACCCCT GTCTGCGCACAAGCAGTGGGTCACCTCGCTCGCGTGGGAACCTTTGCATC GAAATTCCGCTGGGGAACGGCTCGCCAGTTCGTCCAAAGACGCCCTCATC AAGGTTGATGATCTAACGCGTGATCGTGTCTGTGTGGAGAGGAATGATGT TGGGGCTTGTTTCGATGACGAAGACTTCATTGTTCGCCTAAATTTCACAT TCTAAGAGCGTGTGCATCTTCGGACAAGGTGTAAGTGTGTAGCCGGCTCT TGTGCGTAGCGCAGCAGTAGCTTCTCTGGCATTCCTTTGAAGCATTCTTT CCGCGCTGTGCTTCTGTTACGGCTGTGACAGATCTGGAATACGCGGACTG GTCGCTGCGAAGTTACACTCTCCGGACACGCCGACTCCGTCGAGAAAATC ATCTGGGGAGGGGAAGGGCTGCTGTACTCCGCAAGTCGGGATCGCACGAT TAAGGTGAATCTGGGAGTCTTGGGCACCGTTCGGCGAATTTGTCCACATG TGTGCACGTCCTGTGTGTTTCTTCAATTCAACAGAGTAGTGCGACATGCG CAACAAGTTGGACTTAGCTGTAAGGTTTCAGGGAGTACGAGTTCGTCTCT ATGCTTAGTGAGGGCACGCGCGATTTGCACCGCTGGAGTAAACGTGTTTT GAGATTTTCTGCAGGTTTTATTACGAAAGCCATATAAGGCGGTGTACACA ACTCTTTTTTGTTGCCTGTTCACGTGGTGGATCTATGGTCGTACGTACGC GTGGGACTGCTTAGGTGTGGAATGTTGAGGGTGAGGGCCGAAAGCTGGGA ATTTTGGTTCGAACGCTCGTTGGGCACGGCCACCGGGTCAACACCTTGGC CCTCAGCTGCGAGGCGTCACTGCGGACGGGTCCTTTCGGAAAGGAGGAGT GCGCGCTCAAAGCGCTGTCCAAGTTTACTCCAGAAGAGGCTCAAGCCGTC GCTCTCGAACGTTACAATCTGGCAAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:3665..5244-

>mRNA_E-siliculosus-1a_M_contig92.17243.1 ID=mRNA_E-siliculosus-1a_M_contig92.17243.1|Name=mRNA_E-siliculosus-1a_M_contig92.17243.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1314bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:3665..5244- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTTGCAAGCGGGGGCGGAGATATGACCGTGAGATGCTTGCAAGCGGG
GGCGGAGATATGACCGTGAGGTTTTGGGACGTGCAGACATCCCTTCCTCG
CTTCACATGTAGAGGGCATCGCCACCATGTCCTATGCACCGCGTGGGCGC
CAAACGGTTTTGGGACGTGCAGACATCCCTTCCTCGCTTCACATGTAGAG
GGCATCGCCACCATGTCCTATGCACCGCGTGGGCGCCAAACGGGAAACGT
TTCGCGTCTGCCGACAGGAAGGGCGAGATTCGGCTATGGGACCCCTCGAA
GGGGGTGCAGCAGGGCCAACCCCTGTCTGCGCACAAGCAGTGGGTCACCT
CGCTCGCGTGGGAACCTTTGCATCGAAATTCCGCTGGGGAACGGCTCGCC
AGTTCGTCCAAAGACGCCCTCATCAAGGGAAACGTTTCGCGTCTGCCGAC
AGGAAGGGCGAGATTCGGCTATGGGACCCCTCGAAGGGGGTGCAGCAGGG
CCAACCCCTGTCTGCGCACAAGCAGTGGGTCACCTCGCTCGCGTGGGAAC
CTTTGCATCGAAATTCCGCTGGGGAACGGCTCGCCAGTTCGTCCAAAGAC
GCCCTCATCAAGATCTGGAATACGCGGACTGGTCGCTGCGAAGTTACACT
CTCCGGACACGCCGACTCCGTCGAGAAAATCATCTGGGGAGGGGAAGGGC
TGCTGTACTCCGCAAGTCGGGATCGCACGATTAAGGTGAATCTGGGAATC
TGGAATACGCGGACTGGTCGCTGCGAAGTTACACTCTCCGGACACGCCGA
CTCCGTCGAGAAAATCATCTGGGGAGGGGAAGGGCTGCTGTACTCCGCAA
GTCGGGATCGCACGATTAAGGTGAATCTGGGAGTGTGGAATGTTGAGGGT
GAGGGCCGAAAGCTGGGAATTTTGGTTCGAACGCTCGTTGGGCACGGCCA
CCGGGTCAACACCTTGGCCCTCAGCTGCGAGGCGTCACTGCGGACGGGTC
CTTTCGGAAAGGAGGAGTGCGCGCTCAAAGCGCTGTCCAAGTTTACTCCA
GAAGAGGCTCAAGCCGTCGCTCTCGAACGTTACAATCTGGCAAGGTAAGT
GTGGAATGTTGAGGGTGAGGGCCGAAAGCTGGGAATTTTGGTTCGAACGC
TCGTTGGGCACGGCCACCGGGTCAACACCTTGGCCCTCAGCTGCGAGGCG
TCACTGCGGACGGGTCCTTTCGGAAAGGAGGAGTGCGCGCTCAAAGCGCT
GTCCAAGTTTACTCCAGAAGAGGCTCAAGCCGTCGCTCTCGAACGTTACA
ATCTGGCAAGGTAA
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