mRNA_E-siliculosus-1a_M_contig91.17237.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17237.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17237.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: D8LJS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.650e-33
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 MADVKVEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPATGQAKPQQS 240
            M+DVKVEEKVPV EVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPATGQAKPQQS
Sbjct:    1 MSDVKVEEKVPVAEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPATGQAKPQQS 80
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: A0A7S2CP29_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP29_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.870e-10
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   25 KVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPATG 219
            + P  EVLEEDDEFEEFAE NWD++AED ED  QW++D        DF NQLRAEL  T P +TG
Sbjct:   23 EAPKLEVLEEDDEFEEFAEKNWDKSAEDGEDAAQWEEDWDDGELDDDFTNQLRAEL--TAPGSTG 85
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: A0A8J5X4N4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4N4_DIALT)

HSP 1 Score: 58.2 bits (139), Expect = 1.860e-7
Identity = 38/66 (57.58%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 MADVKVEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            MAD K EE +   ++LEEDDEFEEF   +WD TAED ED Q WQDD        DF  QLRAEL K
Sbjct:    1 MADQKKEEDL---DMLEEDDEFEEFEAESWDLTAEDAEDQQLWQDDWDEDDAKNDFTQQLRAELAK 63
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: A0A7S4EAY6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAY6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.270e-7
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   19 EEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            E++ P  EV EEDDEFEEFA+ NWD  AED ED + WQDDX       DFC  LR EL+K
Sbjct:  115 EKRKPDYEVYEEDDEFEEFAQDNWDAAAEDAEDPKLWQDDXDDDDVDDDFCRHLREELQK 174
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: A0A7S1ZHX0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHX0_TRICV)

HSP 1 Score: 56.2 bits (134), Expect = 2.110e-6
Identity = 31/56 (55.36%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   31 PVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            P+TE +EEDDEFEEF    WD   ED ED QQWQD+        DF   LRAEL K
Sbjct:   38 PITEAIEEDDEFEEFEPCRWDAHDEDAEDAQQWQDNWDDDDIEDDFTKNLRAELTK 93
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: I1CD22_RHIO9 (26S proteasome complex subunit DSS1 n=2 Tax=Rhizopus TaxID=4842 RepID=I1CD22_RHIO9)

HSP 1 Score: 52.4 bits (124), Expect = 3.290e-5
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   43 VLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            VLEEDDEFEEFA  +W E  EDQ D   W+D+        DF  QLRAELEK
Sbjct:   24 VLEEDDEFEEFAAEDWGEEEEDQNDAHFWEDNWDDDDIEDDFSKQLRAELEK 75
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Match: A0A0U2T7H1_9MAXI (Putative 26S proteasome complex subunit DSS1 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2T7H1_9MAXI)

HSP 1 Score: 51.6 bits (122), Expect = 4.000e-5
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   43 VLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELE 195
            +LEEDDEFEEF + +WD   EDQ D++ W+D+        DFCNQLR  LE
Sbjct:   10 LLEEDDEFEEFEQEDWDIRREDQTDIKVWEDNWDNDDLESDFCNQLRKVLE 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LJS1_ECTSI3.650e-3397.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CP29_9STRA3.870e-1060.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J5X4N4_DIALT1.860e-757.58Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S4EAY6_9STRA5.270e-758.33Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S1ZHX0_TRICV2.110e-655.36Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
I1CD22_RHIO93.290e-557.6926S proteasome complex subunit DSS1 n=2 Tax=Rhizop... [more]
A0A0U2T7H1_9MAXI4.000e-552.94Putative 26S proteasome complex subunit DSS1 n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:655919..659404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size243
Model size1323
Exons3
Ec32 orthologEc-12_003050.1
Ec32 ortholog descriptionDSS1/SEM1
Hectar predicted targeting categoryother localisation
Seed eggNOG ortholog65071.PYU1_T012479
Seed ortholog evalue3.3e-07
Seed ortholog score60.8
Taxonomic scopeEukaryota
KEGG Pathwayko03050,ko03440,ko05169,map03050,map03440,map05169
KEGG koko:K10881
BRITEko00000,ko00001,ko00002,ko03051,ko03400,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelPythiales
COG Functional cat.S
EggNOG OGs1MI59@121069,2E19H@1,2S8ME@2759
EggNOG free text desc.DSS1_SEM1
KEGG ModuleM00341
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17237.1prot_E-siliculosus-1a_M_contig91.17237.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 655919..658324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936451.5017018-CDS-E-siliculosus-1a_M_contig91:655918..6559871622936451.5017018-CDS-E-siliculosus-1a_M_contig91:655918..655987Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 655919..655987 +
1696251084.884713-CDS-E-siliculosus-1a_M_contig91:655918..6559871696251084.884713-CDS-E-siliculosus-1a_M_contig91:655918..655987Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 655919..655987 +
1622936451.6002119-CDS-E-siliculosus-1a_M_contig91:657536..6575991622936451.6002119-CDS-E-siliculosus-1a_M_contig91:657536..657599Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 657537..657599 +
1696251084.8979106-CDS-E-siliculosus-1a_M_contig91:657536..6575991696251084.8979106-CDS-E-siliculosus-1a_M_contig91:657536..657599Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 657537..657599 +
1622936451.615218-CDS-E-siliculosus-1a_M_contig91:658213..6583241622936451.615218-CDS-E-siliculosus-1a_M_contig91:658213..658324Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 658214..658324 +
1696251084.9061577-CDS-E-siliculosus-1a_M_contig91:658213..6583241696251084.9061577-CDS-E-siliculosus-1a_M_contig91:658213..658324Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 658214..658324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936451.6275828-UTR-E-siliculosus-1a_M_contig91:658324..6594041622936451.6275828-UTR-E-siliculosus-1a_M_contig91:658324..659404Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 658325..659404 +
1696251084.9140568-UTR-E-siliculosus-1a_M_contig91:658324..6594041696251084.9140568-UTR-E-siliculosus-1a_M_contig91:658324..659404Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 658325..659404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17237.1

>prot_E-siliculosus-1a_M_contig91.17237.1 ID=prot_E-siliculosus-1a_M_contig91.17237.1|Name=mRNA_E-siliculosus-1a_M_contig91.17237.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=81bp
MADVKVEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDWDDD
DMDDDFCNQLRAELEKTKPPATGQAKPQQS*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig91:655919..659404+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17237.1 ID=mRNA_E-siliculosus-1a_M_contig91.17237.1|Name=mRNA_E-siliculosus-1a_M_contig91.17237.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3486bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:655919..659404+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGACGTGAAGGTTGAGGAGAAGGTGCCCGTGACGGAGGTGCTCGA
AGAAGATGACGAGTTCGAGGTGAGATGGGCTCGTGAATGAGTGACGGTTT
TAGAGCCTTCTCAATGACAGCATAATTTATTGTTGCGTGGTTCACAGATC
CGTCTGTCGAAGTCGGGCCGTCGATCGCTGCCATGTCAATCTCAGGCACT
CGCGGTAAACCGTACCAACGATATGCGGTACGACGTTGCGGTTCCTTCAC
TAGTAAGAGCAATCAAGAGGCACGATGCTGAGCTTCTGTCGTATGTGTGC
AAAAAAATATAAAATTGCACTTTGAAGCAGTACCTGGAGCTACTGTATAC
ATCCTGCTGTGAACCACAAGGCTGCAGTCTTTCGTCTGTTTATGCAATGC
ATCGTCGTTACAGCAGCAGTGCCGGCTATGCATACGATACATGACTTCCA
ACTGCAATTAGTTACGGGCGCTATGTTCGACACTTTCTTATTTGGTTGGG
GGTGTTTTGTTTTTGGTTTGGGCGTTTTTATTTTTCAGTTTTGGGGACGC
AATACTATCGTAAACCAGAACACAAAGCATCGGGTAGCATACAAAACTCG
GCAACGGTGAGCGTGCAAAAGATGACCTCGAAAACCGTCCTGACGGGCCG
GTTGCCAACACGGAAGCCATTGTTAAGTTTTATGGGGCTACCCCGTTTTT
AAAGAACGTAGCCAGCGCTGCCATCGCACACACGCAACCAAGGGCGTAGC
GGAGAGGAGGTCGCGCGGAGGGCGAAAAAGAGAGCCATTTTGCAGAATAC
AAGTATGCATACCTTGTTCGGCGGTCCACAGGCCGCCGAAACATACACTG
GATTCGACCGGTAGTACCAGAACGACCAGGCTTGTTACCCACTCGACACA
ATATTCCTGGCCCAAAAGAAAAGGTGGTCCAACCAAACGCGTTGGGGATA
CGGTGTCGTGGCCTTATCCCCAACACGTTTAGTTGGACCATCCTGTCTTT
TATGCCAGCAGTACGGTGCCGAACAGGGAAGAAGTTCGGCGGTTCTGGTA
CATACTCCAGGTCGATATCCAATGCATGTTTCGGCGGCCTGGCCCACGGG
GAAAAAGGTAATCTAGAGGGTGGTCAACATGGTTCTCTCCGCGTGCCGCG
CAACCTCCTCTCCGCTACTCCCCCTTGGTTGTGTGCGACAACCGCAGCAA
GGAGGTCGAGCAAGGCCAGTTCTATGGGTTCGTGCTCCACTCCAGGCTTT
TTCCATGAAGTGCAACCGCGAGCGAGCCGCTTTCCGAAAAGAACACAAAG
AACACTACAAACCAGCGACGTGTGCGTCGCAGCACAGCTCTCGCGCGATG
TACAGTACCCCAACTGTCGCCTTAATAGATTGGCGACTACAGCAGTAGTA
CAGGTAGTCAGAAAGGGTTATCTCTCGCGGCAGCTCGAGCGCGAAAACAG
CCTTGCGCTAACGCACGTCGTCCACGGCATAGCACGTCGAAACGGCAACG
ATTGTCGCCATCGATGGATGTTTCCCATTCTCTTTGTTGTCCACCTATAC
CCCCAACAACTCGTTTTGTGTTCGCGTCACACGTATGTTTCTGTGCGCTC
GGCTTCCACGACACTCAGGAGTTCGCTGAGGCGAACTGGGACGAGACTGC
AGAGGACCAGGAGGACCTCCAGCAGTGGCAGGTAACCCACGGTAACGGTA
ACCAACTAAATACTGCCGTTTTTCGAGAGAGAAAAAGAGGTACAGTAGCC
TAGGATAAGATCGTCTACTAGCCGGGACGCGGAGGGGCGCGTGTCGTTGT
CCTTCCTCCCAGCTGTGTGAAGAAGGCAAATTTTGGTGACGCCGGCGGCC
GGGACGGAACGCAGAACGCCTTCGTGCGACAAAAAAAAGAAATCGATCGA
AGGATTCTCCGTAGCGCAAGACCACTTTCTGGGGGCGGAATGCTTTGCTG
CGTGGCGTTCCAAGAATTAGAATTGGCGGCAGTCGCTTGGTCAAGGTAAC
AGAAGTATCCCCGGGCCTAAGGGATATCATGGACTTGTAACCACGTCAAT
TTATTTATGCCCGTAGGTCAGCGAAAGAGATCCCTTGGTAACCTCTGGCA
GGAGTGAAACCCATCGTGTCGTTTGTCTGAATATAGCACCCCGGCTTCCT
TCCCAAGCGAGATTGACGATGGCCGCTCCCTGAAAACAACGTGAAAGCTC
CACGTATCACTTCGTGCTCGCTTTCACCGCCACAATTTCATCCCTGCTCC
CCATGTTTTTCGTGTGTACTACTGCAATGTCTTTTTTTCACGAAGGACGA
CTGGGACGACGATGACATGGACGATGACTTCTGCAACCAGCTGAGAGCGG
AGCTCGAGAAGACGAAGCCGCCGGCAACAGGCCAAGCAAAACCACAACAG
TCGTGAAACTTAAAGGGGAAGAGCCCGAGAGAGTTGCTGCTGCATGCCTC
TTGTCCGGTCGAGTCGCGCCTCTGTTCCATTTTCTTTTCTGTCGTTGTGT
GCATACGGTTTTGACGAGATAGTGAGTTTTTTTGAAATGTAAGTGTTTTT
TAACTGATGTTCCTTTCTTCGTGCCACGGTCTTACGGGTCCGGCGGTAGA
CATGAGCGCACGGACCACTTTTACCGGAACCGGCGTGAAGACAAACACGA
AGATACCTCAGTCGAAGACAATTGAGCCTCTCCTGCGGCCGCTAGGATAT
TGCGGTGTGTACCGCGACGCGCGACTGCAGTCGACGCCCATCACGAGAGG
AGGTGATCGGCATGCTCCTCCCACGGCATGTATCGGGGTTTCGGTGGGGC
ATTCACAACCGACGTCGTACATCCTGATTTTGCAGCTCGAGCCTTCCGTG
AAGATGGGGTGTCTATTACATGCCCCCACACCCCAGTATCCGTCCGTCCA
CATGGATGGGCGCCACTCTTGCGGAGTCATAGTGAATCGAATCACGCGTG
TCGCGCCATGCACCGATGTCGATATACCGGTGCTTCGTTGTTCCGAGTGC
ATCCGTTTTATTCCACCGTTCGCCCGAAGCACGTTTTTGTACGCCTCGAG
GAGAGTCCCTGACGTGCTGTAGCTCTACGACAAGCCTTCTCATGCGGCTG
CCTCGCTGCTCCTTCAAGAGTCTGATAGACGCGTGTACACCGCATCCAAG
GGCAACGTGTTGAAGGATGCGCAGAATAGCCTGCAGCCTGCTTCAGAGGG
TCACGCGGAACAGGAGCAGCTAGTAGCTGTGTCGGAGCTTGGACCACACA
TAGCTGGCCAACATAAGCAGTTTTTCTCCTGCTCCCACATTAGTGAGGGA
GCCCCTGCTGTGCTGCAAGCAGCACCTACGACTCTCACGTTGGTGCGTGC
TCGAGCTCCGATTTGTCGATGCCCTGTCGGGGCAAGTCGTGGTGTTCTGT
CAGAGGTTTGGCTTCGCCTTCGCCAAAACAAGGATGGAAGCTTGGAAAAT
TGTACGCTCTATTCAGCAGTAGCCGCGTATGTAGAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:655919..659404+

>mRNA_E-siliculosus-1a_M_contig91.17237.1 ID=mRNA_E-siliculosus-1a_M_contig91.17237.1|Name=mRNA_E-siliculosus-1a_M_contig91.17237.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:655919..659404+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGACGTGAAGGTTGAGGAGAAGGTGCCCGTGACGGAGGTGCTCGA
AGAAGATGACGAGTTCGAGATGGCGGACGTGAAGGTTGAGGAGAAGGTGC
CCGTGACGGAGGTGCTCGAAGAAGATGACGAGTTCGAGGAGTTCGCTGAG
GCGAACTGGGACGAGACTGCAGAGGACCAGGAGGACCTCCAGCAGTGGCA
GGAGTTCGCTGAGGCGAACTGGGACGAGACTGCAGAGGACCAGGAGGACC
TCCAGCAGTGGCAGGACGACTGGGACGACGATGACATGGACGATGACTTC
TGCAACCAGCTGAGAGCGGAGCTCGAGAAGACGAAGCCGCCGGCAACAGG
CCAAGCAAAACCACAACAGTCGTGAGACGACTGGGACGACGATGACATGG
ACGATGACTTCTGCAACCAGCTGAGAGCGGAGCTCGAGAAGACGAAGCCG
CCGGCAACAGGCCAAGCAAAACCACAACAGTCGTGA
back to top