mRNA_E-siliculosus-1a_M_contig91.17234.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17234.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17234.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17234.1 vs. uniprot
Match: D8LJR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR8_ECTSI)

HSP 1 Score: 1162 bits (3006), Expect = 0.000e+0
Identity = 745/835 (89.22%), Postives = 755/835 (90.42%), Query Frame = 1 
Query:    1 MAKGDVDDPEKDPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISPVKEGTGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVASGGCVSLYPIGEIFEDLYRETHGLPLRKQNHAYVQHDGDEGNCRPEKIHGALEVESSAPXXXXXXXXXXXXXXXXXXXXXEGCCELATDPDVVRLLAELRAGLADDPNCCSDGSDAEVGGEGXXXXXXXXXXXXXXXXXDKKKEIDEGDRGTDREGEEEAAGDETKDGTNGLRLASEEPHPAGEESATAAGAAGKERASSPRRGEHHNPEVVRRVDISRMKIDGGGPQARPQSAPSACLSAGGFSRLSSRASSSSRLARTVSLRLMEATREAEGQRAPAAQGGGGDCGRGAGRGEAAWRLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLGPRGQPSASRAASRSGAPPAAAVRQRPKTAVAKNRRHRPQYNRGHAGNTNNGNPLLNHRETEFLFGIGAAPEVAAXXXXXXXXXXXXXXVSPRAPSLRKTTLGRMLRRSSASSFSPSNGGDVCRRNVRPELSECSSSSASSLYRRPLSAGNACIGSLFLEDGKRRAGRGTAQAIDDDTSCAKHRLGAVPRAGKHAAVAQAAATRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSPAARPSLALTRGDRHEAATAAQGCGYRSVGAAPVAGGLAEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQINTKDSTGDILLSTQGMTKARIADDCWSSEAQRQYPG 2505
            MAKGDVDDPE+DPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISPVKEG GESILDRTLRSDNSGELFFKELASLEAKDRAKVAGV SG CVSLYPIGEIFEDLYRETHGLP R QNHAYVQH+GDEGNCRPE+IHGA EVESSAP                     EGCCELATDPDVVRLLAEL+AGL DDPNCCSDGSDAE+GGEG XXXXXXXXXXXXXXXX        GDR TD+EG+E AAGDETKDGTNG RLASEE HPAG ESA AA  AGKERASSPR GEHHNPEVVRRVDISRMKIDGGGPQARP+SAPSACLSAGGFSRLSSRASSSSRLAR VS RLMEATRE EGQRAP AQGGGGDC RGAGRGEA  RLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLGPRGQPSA RAAS S APP AAVRQRPKTAVAKNRR RP  NRGHAGNTNNGNPLLNHRETEFLFG G APEV A XXXXXXXXXXX  VS RAPSLRKTTLGRMLRRSSASSFSPSNGGDV RRNVRPELSEC SSSASSLYRRPLSAGNAC GSLFLEDGKRRAGRGTAQAIDDDTSCAKH LG +PRAGKHAAVAQAAATRA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSPAAR SLA TRGDRHEAATAAQGCGY  VGAAP AGG AEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQINTKDSTGDILLSTQGMTKARIADDCWSSEAQRQY G
Sbjct:    1 MAKGDVDDPEEDPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISPVKEGMGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVTSG-CVSLYPIGEIFEDLYRETHGLPPRNQNHAYVQHEGDEGNCRPEEIHGAPEVESSAPPAAAVRKGGGRGSRGHDGGGGEGCCELATDPDVVRLLAELQAGLVDDPNCCSDGSDAELGGEGKXXXXXXXXXXXXXXXXXXXXX---GDRXTDQEGQE-AAGDETKDGTNGPRLASEEQHPAGGESAEAA--AGKERASSPRGGEHHNPEVVRRVDISRMKIDGGGPQARPRSAPSACLSAGGFSRLSSRASSSSRLARAVSQRLMEATREVEGQRAPEAQGGGGDCDRGAGRGEATGRLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLGPRGQPSAPRAASHSAAPPPAAVRQRPKTAVAKNRRPRPHNNRGHAGNTNNGNPLLNHRETEFLFGAGTAPEVVAAXXXXXXXXXXXDDVSRRAPSLRKTTLGRMLRRSSASSFSPSNGGDVRRRNVRPELSECGSSSASSLYRRPLSAGNACSGSLFLEDGKRRAGRGTAQAIDDDTSCAKHTLGGMPRAGKHAAVAQAAATRAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSPAARSSLARTRGDRHEAATAAQGCGYHGVGAAPAAGGSAEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQINTKDSTGDILLSTQGMTKARIADDCWSSEAQRQYRG 828
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17234.1 vs. uniprot
Match: A0A6H5KY38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY38_9PHAE)

HSP 1 Score: 937 bits (2422), Expect = 0.000e+0
Identity = 629/781 (80.54%), Postives = 652/781 (83.48%), Query Frame = 1 
Query:  100 MEELRDDLERTLTSISPVKEGTGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVASGGCVSLYPIGEIFEDLYRETHGLPLRKQNHAYVQHDGDEGNCRPEKIHGALEVESSAPXXXXXXXXXXXXXXXXXXXXXEGCCELATDPDVVRLLAELRAGLADDPNCCSDGSDAEVGGEGXXXXXXXXXXXXXXXXXDKKKEIDEGDRGTDREGEEEAAGDETKDGTNGLRLASEEPHPAGEESATAAGAAGKERASSPRRGEHHNPEVVRRVDISRMKIDGGGPQARPQSAPSACLSAGGFSRLSSRASSSSRLARTVSLRLMEATREAEGQRAPAAQGGGGDCGRGAGRGEAAWRLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLGPRGQPSASRAASRSGAPPAAAVRQRPKTAVAKNRRHRPQYNRGHAGNTNNGNPLLNHRETEFLFGIGAAPEVAAXXXXXXXXXXXXXXVSPRAPSLRKTTLGRMLRRSSASSFSPSNGGDVCRRNVRPELSECSSSSASSLYRRPLSAGNACIGSLFLEDGKRRAGRGTAQAIDDDTSCAKHRLGAVPRAGKHAAVAQAAATRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSPAARPSLALTRGDRHEAAT-AAQGCGYRSVGAAPVAGGLAEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQINTKDSTGDILLSTQ 2439
            MEELRDDLERTLTSISP+KEGT ESILDRTLRSDNSGELFFKELASLEAKDR KVAGVA GGCVS YPIGEIFE+LYRETHGLP RKQNHAYVQ DGDEGN RPE+ HG  EVESSAP                     EG CELA DPDVVRLLA+L+AGL DDPNCCSDGSD EVGGEG XXXXXXXXXXXXX    KK+E DEGDRG D+ G+EEAAGDET DGTNG RLASEE HP                         HNP+VVRRVDISRMKIDG  PQARP+SAPSACLSAGGFSRLSSRASSSSRLART+S RLMEATRE EGQRAP AQGGG DCGRGAGRGEAA RLRPSTSASRIA A+ERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLP+G RGQPS +RAASRSGAPP +AVR+RPKTAVAKNRRH P  +RGHAGNTNNGNPLLN RETEFLFG G APEVAAXXXXXXXXXXXXXX     PSLRKTTLGRMLRRSSASSFSPSNGGDV RRNVRPELSEC+SSSASSLYRRPLSAG AC GSLFLEDG+RRAGRGTAQAID  TSCAKH LGAVPRAGKHAAVAQAAATR R            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ PAAR SLA TRGD HEAA  A+ G G + VGA P AG  A REP AMMNARQALEATIREAVDTVSPVEQFVNARKTI DMKQINT+D+TGDILLSTQ
Sbjct:    1 MEELRDDLERTLTSISPIKEGTSESILDRTLRSDNSGELFFKELASLEAKDRTKVAGVAPGGCVSQYPIGEIFENLYRETHGLPPRKQNHAYVQDDGDEGNSRPEEHHGVPEVESSAPPAVAVRDEGGRGSRHHDGGG-EGYCELAADPDVVRLLAQLQAGLVDDPNCCSDGSDTEVGGEGKXXXXXXXXXXXXXG---KKRETDEGDRGADQGGQEEAAGDETNDGTNGPRLASEEQHPXXXXXXXXXXXXXXXXXXXXXX--XHNPKVVRRVDISRMKIDGIDPQARPRSAPSACLSAGGFSRLSSRASSSSRLARTMSQRLMEATREVEGQRAPEAQGGGVDCGRGAGRGEAAGRLRPSTSASRIALAEERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPVGSRGQPSGTRAASRSGAPPPSAVRERPKTAVAKNRRHCPHNSRGHAGNTNNGNPLLNRRETEFLFGAGTAPEVAAXXXXXXXXXXXXXXXXXXXPSLRKTTLGRMLRRSSASSFSPSNGGDVRRRNVRPELSECNSSSASSLYRRPLSAGIACSGSLFLEDGQRRAGRGTAQAIDHGTSCAKHTLGAVPRAGKHAAVAQAAATRVRRRPSSAAPGNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGPAARSSLAQTRGDHHEAAAVASHGWGDQGVGATPAAGERAGREPTAMMNARQALEATIREAVDTVSPVEQFVNARKTITDMKQINTQDTTGDILLSTQ 775
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJR8_ECTSI0.000e+089.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY38_9PHAE0.000e+080.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:636207..640961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size2508
Model size2559
Exons6
Ec32 orthologEc-12_003020.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936451.0200002-UTR-E-siliculosus-1a_M_contig91:636206..6362571622936451.0200002-UTR-E-siliculosus-1a_M_contig91:636206..636257Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 636207..636257 -
1696251084.6006143-UTR-E-siliculosus-1a_M_contig91:636206..6362571696251084.6006143-UTR-E-siliculosus-1a_M_contig91:636206..636257Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 636207..636257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936451.0426269-CDS-E-siliculosus-1a_M_contig91:636257..6363261622936451.0426269-CDS-E-siliculosus-1a_M_contig91:636257..636326Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 636258..636326 -
1696251084.610864-CDS-E-siliculosus-1a_M_contig91:636257..6363261696251084.610864-CDS-E-siliculosus-1a_M_contig91:636257..636326Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 636258..636326 -
1622936451.058187-CDS-E-siliculosus-1a_M_contig91:636660..6378421622936451.058187-CDS-E-siliculosus-1a_M_contig91:636660..637842Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 636661..637842 -
1696251084.6198537-CDS-E-siliculosus-1a_M_contig91:636660..6378421696251084.6198537-CDS-E-siliculosus-1a_M_contig91:636660..637842Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 636661..637842 -
1622936451.080299-CDS-E-siliculosus-1a_M_contig91:638044..6389891622936451.080299-CDS-E-siliculosus-1a_M_contig91:638044..638989Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 638045..638989 -
1696251084.6292944-CDS-E-siliculosus-1a_M_contig91:638044..6389891696251084.6292944-CDS-E-siliculosus-1a_M_contig91:638044..638989Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 638045..638989 -
1622936451.0960622-CDS-E-siliculosus-1a_M_contig91:639449..6396621622936451.0960622-CDS-E-siliculosus-1a_M_contig91:639449..639662Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 639450..639662 -
1696251084.6395361-CDS-E-siliculosus-1a_M_contig91:639449..6396621696251084.6395361-CDS-E-siliculosus-1a_M_contig91:639449..639662Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 639450..639662 -
1622936451.1112938-CDS-E-siliculosus-1a_M_contig91:640122..6401911622936451.1112938-CDS-E-siliculosus-1a_M_contig91:640122..640191Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 640123..640191 -
1696251084.6499438-CDS-E-siliculosus-1a_M_contig91:640122..6401911696251084.6499438-CDS-E-siliculosus-1a_M_contig91:640122..640191Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 640123..640191 -
1622936451.1274908-CDS-E-siliculosus-1a_M_contig91:640931..6409611622936451.1274908-CDS-E-siliculosus-1a_M_contig91:640931..640961Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 640932..640961 -
1696251084.66484-CDS-E-siliculosus-1a_M_contig91:640931..6409611696251084.66484-CDS-E-siliculosus-1a_M_contig91:640931..640961Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 640932..640961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17234.1prot_E-siliculosus-1a_M_contig91.17234.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 636258..640961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17234.1

>prot_E-siliculosus-1a_M_contig91.17234.1 ID=prot_E-siliculosus-1a_M_contig91.17234.1|Name=mRNA_E-siliculosus-1a_M_contig91.17234.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=836bp
MAKGDVDDPEKDPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISP
VKEGTGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVASGGCVSLY
PIGEIFEDLYRETHGLPLRKQNHAYVQHDGDEGNCRPEKIHGALEVESSA
PPAAAVRERGGGGSRGHDGGGGEGCCELATDPDVVRLLAELRAGLADDPN
CCSDGSDAEVGGEGKGRAEEEEDDDDDNDNDDKKKEIDEGDRGTDREGEE
EAAGDETKDGTNGLRLASEEPHPAGEESATAAGAAGKERASSPRRGEHHN
PEVVRRVDISRMKIDGGGPQARPQSAPSACLSAGGFSRLSSRASSSSRLA
RTVSLRLMEATREAEGQRAPAAQGGGGDCGRGAGRGEAAWRLRPSTSASR
IAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLG
PRGQPSASRAASRSGAPPAAAVRQRPKTAVAKNRRHRPQYNRGHAGNTNN
GNPLLNHRETEFLFGIGAAPEVAAAAVAATVAEDDDDDVSPRAPSLRKTT
LGRMLRRSSASSFSPSNGGDVCRRNVRPELSECSSSSASSLYRRPLSAGN
ACIGSLFLEDGKRRAGRGTAQAIDDDTSCAKHRLGAVPRAGKHAAVAQAA
ATRARRRPSSAAPGNGCSRRRDRPSSPSQTSFHHYGRHQQTAGGGRTRTR
KDSPSSRKSDGGGGQSPAARPSLALTRGDRHEAATAAQGCGYRSVGAAPV
AGGLAEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQIN
TKDSTGDILLSTQGMTKARIADDCWSSEAQRQYPG*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig91:636207..640961-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17234.1 ID=mRNA_E-siliculosus-1a_M_contig91.17234.1|Name=mRNA_E-siliculosus-1a_M_contig91.17234.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4755bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:636207..640961- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGAAGGGCGACGTTGATGACCCAGAGGTGCGCCGCCTGCGTGCTCC
TGTATTTGTTCAACAATCTCATTCGAAAGCACGTTGTTGGTGTGACGGGC
TATCTATTCCTACCGCCGCCGTCGTTACCAACACTTGGTGCACTCGATTT
GTAGGCACTCTCGAGCACCCAAACTGACTATCAGAGACTAGAGGAAGGGC
ACAGTGTAAACTGGTCTCTTTCCGGTTGCAACCATACGCCAAGACGCAAT
GTAGCCCGCACGGCTCACCTTCTGTGCATGTTCACCCGCATGTATGTAGT
ACCGCGCATGCATACAATTTGACGACAGATATATATGTAGTCTGGTCATT
CAGCAGTGCAATTGTCACATGAACGGACAGGTCAGCTTGTTGTGCGCTTC
TGACTGCAATCGCTGCTATACAACCCCCCACACTTTGTCCATGGAGACCT
GTGTATGTAGACTACAGCAGCAGTACCTCCAAAGATACTTACTTGTTATT
GTGTGTATTTGTAGATGGTTTGTTCCTACAATTTTTTCTCAGGCAATGTT
CTCAAAGTCAAAGCCATGATCCAAAGATCGGAGAAGCGCAAACAGACATT
TACTCCAAAACAAGGTGGTGATAATGAGTAGGTTCTACTGCACATGAAAT
ATCGGGCAGTCCTATGCTTCGCGCCGGCTCCGACCCTCCCTTTGTTCCAT
CGAACCCGCCGGCACCCGTGCTGCTCTTATTCCCTCTCTCTCCCCACTTC
TCTCTCTCTTTCTCTTGCAGAAAGACCCGGCTCTCTTCCCAGAGCGGAGG
GTGCGGCCGTGGGTCGTGGATGACGATGCGGAGAGAAAGGTGTTGCTTTC
GCGTCTCTACTGTTTGATGTGGAGCTGTGTGGTTGTGTACGTTTGGGACT
CGCGTCACACGTACAGCCAGTTGCTATTCGACGGCCCCATCCGTCTCATG
TGGCATGTGTCTTCTAAAACCTTTCCAAAACCCATAGGATCCGTCGGCTG
CACGTGCGACGGACATGCATACAACGTCTCCCCAGCAATTCTATTGCTAT
TGTGAAGGTTTACAGAAAGTGCCCATGCGAAAATAGGGAATCGTCCTCGC
GAGACGTTGGGGAGACGGTACCCTCCATGAAGGTCACCTCGACACCCATA
GCTCTCACGGTTACACGAGTTCGGTGCGCCGTGCAAACCTTTGCGACTAA
GGAATATCCGGTTCTCATGCTTCTTAGACTCTGACGGAATTGTTCTTGCC
ATCTCTCTCATGTTCTGGCATGCCTCTTCGTGTTTGATTCGGGAAAAAGA
TGGAGGAGCTCCGAGACGACCTCGAGAGGACCCTCACCTCCATTTCGCCG
GTCAAAGAAGGCACGGGCGAGAGCATCCTCGACCGGACTCTCCGCTCCGA
CAACAGCGGCGAGCTTTTCTTCAAGGAGCTGGCCTCTCTAGAGGCCAAGG
ACAGAGCCAAAGTCGCGGGAGTCGCCTCGGGGGGCTGTGTCAGTCTATAT
CCCATCGGCGAGGTGGGTCTCGATGAAATAGTGTGGGATAAACTGCAGGA
TGCATTTGTTAATGGAAGCTGCCGCGTTGGATGGCGCTATGTAACATGGT
GTACGTCGAGCACGGTCACATCCATTTCCGGCGCAAATACGAGAGAGACT
CGCGTGGTAATGGAACAGAAAACATACGAATGAAGGGCGCTGTTTTCCGT
GGCAGTCCATTGCAACGTTGGCACAGACGACGAGATATGTAGACGGGAGC
CTACAGGCATTACTCTTCCCCTCCTCATATATTTCCTTGCATCTGTTGTG
GGAAAGCCGCCAAAGCGCTGCCAAGAGTACATTAGTCTCGCCATACCCCT
TTCAAGTTTCGACAGGCGACCAAGTGATCGATCCCTGAGCAGTGAGTCTT
CACGCGCCCTAATCAGACCTGCGATTGTTGTTTGATCCACACGGGGCGCG
GCCTTCCGCTGCCGTTCCGCAGATATTCGAGGACCTGTATCGGGAGACCC
ATGGACTACCTCTGCGAAAACAGAACCACGCTTATGTTCAGCACGACGGC
GATGAAGGCAACTGCCGACCCGAGAAGATCCACGGAGCCCTGGAGGTGGA
GTCATCAGCACCGCCAGCGGCAGCGGTAAGGGAAAGGGGGGGTGGGGGGA
GCCGAGGCCACGATGGTGGCGGCGGTGAAGGCTGCTGCGAGCTAGCGACC
GACCCTGACGTGGTGCGACTGCTGGCTGAGCTTCGTGCTGGACTAGCCGA
CGATCCCAACTGCTGCAGCGACGGCTCGGACGCCGAGGTGGGGGGGGAGG
GCAAGGGCAGGGCGGAGGAGGAGGAGGACGACGACGACGACAACGACAAC
GACGACAAGAAGAAGGAGATCGACGAAGGAGACCGAGGCACGGATCGAGA
AGGGGAAGAAGAAGCTGCGGGGGACGAGACCAAAGACGGCACGAACGGGC
TTCGACTCGCGAGTGAAGAGCCACACCCAGCGGGGGAGGAGTCAGCGACG
GCGGCGGGGGCGGCAGGAAAAGAGCGGGCATCGTCTCCCCGTAGGGGGGA
GCACCACAACCCGGAGGTGGTGAGGCGGGTGGACATAAGCAGGATGAAGA
TAGACGGCGGCGGGCCTCAGGCAAGGCCGCAATCGGCCCCGTCGGCGTGC
TTGTCGGCAGGCGGCTTCTCGAGGCTGTCGTCCAGGGCGTCCAGCAGCTC
GCGTCTGGCTCGCACGGTGAGCCTGAGGCTGATGGAAGCCACGAGAGAGG
CTGAGGGGCAACGGGCGCCGGCGGCACAGGGAGGCGGAGGGGATTGCGGC
CGGGGGGCGGGGCGGGGGGAAGCGGCATGGAGGCTCCGGCCTAGCACCTC
GGCATCGCGAATCGCGCAGGCGGACGAGAGGATAGATGTCGTGAAGCAGA
ATGCCGAGGCGCTGCAGGTATGTAAGAGTTTCCCCATGATCAACACAACA
GAAGTGGAAAGAGCATCCAACCACTGCTGGTGTTGACGCTAGGAGGATAC
TGTATGTACCGATATGGTTCGCCTTCGAAGGGATGTTTGGTCAACACCGT
CTATTGTCAAGGGGCGAAGTCACGTGCACCTCCCTCCCCTCCCCACCCCT
TCGTTGACGTCGCGCACAGGCGAGCATGTCGGTGAAGCGGACGAGGTACC
TCAACTCCCGCAAGCCCCGCGCCGCGAGGTGGTCTCCCCGCGACCGCGAT
CTCCCCCTTGGTCCAAGAGGACAACCCTCCGCATCTCGAGCCGCGTCACG
CTCGGGGGCACCGCCGGCGGCGGCCGTGAGACAGCGACCAAAGACTGCCG
TGGCGAAGAACCGTCGACACCGCCCGCAATACAACCGCGGTCACGCCGGT
AACACCAACAACGGCAACCCATTGCTCAACCATCGAGAAACGGAGTTCCT
GTTCGGGATCGGGGCGGCGCCCGAAGTGGCGGCGGCGGCGGTGGCGGCGA
CGGTGGCTGAAGACGATGACGACGACGTCTCTCCGCGAGCGCCTTCGCTG
CGAAAGACAACGCTCGGTCGGATGCTGCGGCGTTCTTCGGCTTCGTCGTT
CTCACCGAGCAACGGAGGCGACGTCTGCCGGCGCAACGTTAGACCCGAGT
TGTCAGAATGCAGCAGCAGCAGCGCTTCTTCCCTTTATCGCCGCCCGTTG
TCCGCCGGCAACGCCTGCATCGGCTCCTTGTTCTTGGAAGACGGCAAGCG
AAGGGCAGGGAGAGGTACCGCGCAAGCGATTGACGATGATACTTCTTGCG
CCAAGCATAGGCTGGGCGCGGTGCCTCGCGCCGGGAAGCATGCGGCGGTG
GCACAGGCAGCAGCAACGAGGGCGAGAAGAAGGCCCTCGAGCGCTGCGCC
TGGGAACGGGTGCTCCCGGCGAAGGGACCGGCCGTCGTCGCCGTCGCAGA
CATCCTTCCACCACTACGGTAGACACCAACAGACCGCCGGCGGCGGCCGA
ACCCGAACCCGCAAAGACAGCCCCTCTTCCCGAAAAAGCGACGGAGGCGG
TGGTCAAAGCCCGGCGGCGAGACCGTCGTTGGCACTAACGCGCGGAGATC
GCCACGAGGCGGCGACGGCGGCGCAGGGTTGCGGGTACCGCAGCGTCGGC
GCGGCGCCGGTCGCGGGGGGGTTGGCGGAGCGAGAACCCGCCGCGATGAT
GAACGCGCGCCAGGCCCTCGAGGCGACCATCAGGGAGGCCGTCGACACCG
TCTCTCCTGTCGAGCAGTTCGTGAACGCGAGGAAAACCATCGCGGACATG
AAGCAGATCAACACTAAGGATAGCACCGGCGACATCCTCCTGTCCACCCA
GGTGAGAGAGAGGGCCGGCGTTGTCTTGGTGGGGGAGGGGGAGGGCGACG
CTTCATGTGACGAATCGGTATGATGGCTCGGCGAGTCCGTGTTGCACAGC
GAAGCTCTGCCGTTCACCGCCGTATTGCCGAGCAGGCCTCAATAATTCAG
CAGGTACGCAGTATGTCGGAGCTATTGCAAACACGAGACTATCTGCCCGA
ACGAACGAGAGTCTTGCGGCAGACGAGACATCACCCCTACCTACGGAACC
CGGATTTTTTAGTTTTTTGCTTGACCCCCCCCCTGCATGAAAATTGACGC
ACACACTGCTGTGCGCCGTGCTCGTGGTTGGTCAGGGGATGACAAAGGCG
CGGATCGCGGACGATTGTTGGTCGAGCGAGGCTCAGCGGCAGTACCCAGG
GTGACGCAGGCTCTTGGAAGTGAACGCTAAGCCTTGCCGAAAGGGGTGTG
CCGGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:636207..640961-

>mRNA_E-siliculosus-1a_M_contig91.17234.1 ID=mRNA_E-siliculosus-1a_M_contig91.17234.1|Name=mRNA_E-siliculosus-1a_M_contig91.17234.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5016bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:636207..640961- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGAAGGGCGACGTTGATGACCCAGAGATGGCGAAGGGCGACGTTGA
TGACCCAGAGAAAGACCCGGCTCTCTTCCCAGAGCGGAGGGTGCGGCCGT
GGGTCGTGGATGACGATGCGGAGAGAAAGAAAGACCCGGCTCTCTTCCCA
GAGCGGAGGGTGCGGCCGTGGGTCGTGGATGACGATGCGGAGAGAAAGAT
GGAGGAGCTCCGAGACGACCTCGAGAGGACCCTCACCTCCATTTCGCCGG
TCAAAGAAGGCACGGGCGAGAGCATCCTCGACCGGACTCTCCGCTCCGAC
AACAGCGGCGAGCTTTTCTTCAAGGAGCTGGCCTCTCTAGAGGCCAAGGA
CAGAGCCAAAGTCGCGGGAGTCGCCTCGGGGGGCTGTGTCAGTCTATATC
CCATCGGCGAGATGGAGGAGCTCCGAGACGACCTCGAGAGGACCCTCACC
TCCATTTCGCCGGTCAAAGAAGGCACGGGCGAGAGCATCCTCGACCGGAC
TCTCCGCTCCGACAACAGCGGCGAGCTTTTCTTCAAGGAGCTGGCCTCTC
TAGAGGCCAAGGACAGAGCCAAAGTCGCGGGAGTCGCCTCGGGGGGCTGT
GTCAGTCTATATCCCATCGGCGAGATATTCGAGGACCTGTATCGGGAGAC
CCATGGACTACCTCTGCGAAAACAGAACCACGCTTATGTTCAGCACGACG
GCGATGAAGGCAACTGCCGACCCGAGAAGATCCACGGAGCCCTGGAGGTG
GAGTCATCAGCACCGCCAGCGGCAGCGGTAAGGGAAAGGGGGGGTGGGGG
GAGCCGAGGCCACGATGGTGGCGGCGGTGAAGGCTGCTGCGAGCTAGCGA
CCGACCCTGACGTGGTGCGACTGCTGGCTGAGCTTCGTGCTGGACTAGCC
GACGATCCCAACTGCTGCAGCGACGGCTCGGACGCCGAGGTGGGGGGGGA
GGGCAAGGGCAGGGCGGAGGAGGAGGAGGACGACGACGACGACAACGACA
ACGACGACAAGAAGAAGGAGATCGACGAAGGAGACCGAGGCACGGATCGA
GAAGGGGAAGAAGAAGCTGCGGGGGACGAGACCAAAGACGGCACGAACGG
GCTTCGACTCGCGAGTGAAGAGCCACACCCAGCGGGGGAGGAGTCAGCGA
CGGCGGCGGGGGCGGCAGGAAAAGAGCGGGCATCGTCTCCCCGTAGGGGG
GAGCACCACAACCCGGAGGTGGTGAGGCGGGTGGACATAAGCAGGATGAA
GATAGACGGCGGCGGGCCTCAGGCAAGGCCGCAATCGGCCCCGTCGGCGT
GCTTGTCGGCAGGCGGCTTCTCGAGGCTGTCGTCCAGGGCGTCCAGCAGC
TCGCGTCTGGCTCGCACGGTGAGCCTGAGGCTGATGGAAGCCACGAGAGA
GGCTGAGGGGCAACGGGCGCCGGCGGCACAGGGAGGCGGAGGGGATTGCG
GCCGGGGGGCGGGGCGGGGGGAAGCGGCATGGAGGCTCCGGCCTAGCACC
TCGGCATCGCGAATCGCGCAGGCGGACGAGAGGATAGATGTCGTGAAGCA
GAATGCCGAGGCGCTGCAGATATTCGAGGACCTGTATCGGGAGACCCATG
GACTACCTCTGCGAAAACAGAACCACGCTTATGTTCAGCACGACGGCGAT
GAAGGCAACTGCCGACCCGAGAAGATCCACGGAGCCCTGGAGGTGGAGTC
ATCAGCACCGCCAGCGGCAGCGGTAAGGGAAAGGGGGGGTGGGGGGAGCC
GAGGCCACGATGGTGGCGGCGGTGAAGGCTGCTGCGAGCTAGCGACCGAC
CCTGACGTGGTGCGACTGCTGGCTGAGCTTCGTGCTGGACTAGCCGACGA
TCCCAACTGCTGCAGCGACGGCTCGGACGCCGAGGTGGGGGGGGAGGGCA
AGGGCAGGGCGGAGGAGGAGGAGGACGACGACGACGACAACGACAACGAC
GACAAGAAGAAGGAGATCGACGAAGGAGACCGAGGCACGGATCGAGAAGG
GGAAGAAGAAGCTGCGGGGGACGAGACCAAAGACGGCACGAACGGGCTTC
GACTCGCGAGTGAAGAGCCACACCCAGCGGGGGAGGAGTCAGCGACGGCG
GCGGGGGCGGCAGGAAAAGAGCGGGCATCGTCTCCCCGTAGGGGGGAGCA
CCACAACCCGGAGGTGGTGAGGCGGGTGGACATAAGCAGGATGAAGATAG
ACGGCGGCGGGCCTCAGGCAAGGCCGCAATCGGCCCCGTCGGCGTGCTTG
TCGGCAGGCGGCTTCTCGAGGCTGTCGTCCAGGGCGTCCAGCAGCTCGCG
TCTGGCTCGCACGGTGAGCCTGAGGCTGATGGAAGCCACGAGAGAGGCTG
AGGGGCAACGGGCGCCGGCGGCACAGGGAGGCGGAGGGGATTGCGGCCGG
GGGGCGGGGCGGGGGGAAGCGGCATGGAGGCTCCGGCCTAGCACCTCGGC
ATCGCGAATCGCGCAGGCGGACGAGAGGATAGATGTCGTGAAGCAGAATG
CCGAGGCGCTGCAGGCGAGCATGTCGGTGAAGCGGACGAGGTACCTCAAC
TCCCGCAAGCCCCGCGCCGCGAGGTGGTCTCCCCGCGACCGCGATCTCCC
CCTTGGTCCAAGAGGACAACCCTCCGCATCTCGAGCCGCGTCACGCTCGG
GGGCACCGCCGGCGGCGGCCGTGAGACAGCGACCAAAGACTGCCGTGGCG
AAGAACCGTCGACACCGCCCGCAATACAACCGCGGTCACGCCGGTAACAC
CAACAACGGCAACCCATTGCTCAACCATCGAGAAACGGAGTTCCTGTTCG
GGATCGGGGCGGCGCCCGAAGTGGCGGCGGCGGCGGTGGCGGCGACGGTG
GCTGAAGACGATGACGACGACGTCTCTCCGCGAGCGCCTTCGCTGCGAAA
GACAACGCTCGGTCGGATGCTGCGGCGTTCTTCGGCTTCGTCGTTCTCAC
CGAGCAACGGAGGCGACGTCTGCCGGCGCAACGTTAGACCCGAGTTGTCA
GAATGCAGCAGCAGCAGCGCTTCTTCCCTTTATCGCCGCCCGTTGTCCGC
CGGCAACGCCTGCATCGGCTCCTTGTTCTTGGAAGACGGCAAGCGAAGGG
CAGGGAGAGGTACCGCGCAAGCGATTGACGATGATACTTCTTGCGCCAAG
CATAGGCTGGGCGCGGTGCCTCGCGCCGGGAAGCATGCGGCGGTGGCACA
GGCAGCAGCAACGAGGGCGAGAAGAAGGCCCTCGAGCGCTGCGCCTGGGA
ACGGGTGCTCCCGGCGAAGGGACCGGCCGTCGTCGCCGTCGCAGACATCC
TTCCACCACTACGGTAGACACCAACAGACCGCCGGCGGCGGCCGAACCCG
AACCCGCAAAGACAGCCCCTCTTCCCGAAAAAGCGACGGAGGCGGTGGTC
AAAGCCCGGCGGCGAGACCGTCGTTGGCACTAACGCGCGGAGATCGCCAC
GAGGCGGCGACGGCGGCGCAGGGTTGCGGGTACCGCAGCGTCGGCGCGGC
GCCGGTCGCGGGGGGGTTGGCGGAGCGAGAACCCGCCGCGATGATGAACG
CGCGCCAGGCCCTCGAGGCGACCATCAGGGAGGCCGTCGACACCGTCTCT
CCTGTCGAGCAGTTCGTGAACGCGAGGAAAACCATCGCGGACATGAAGCA
GATCAACACTAAGGATAGCACCGGCGACATCCTCCTGTCCACCCAGGCGA
GCATGTCGGTGAAGCGGACGAGGTACCTCAACTCCCGCAAGCCCCGCGCC
GCGAGGTGGTCTCCCCGCGACCGCGATCTCCCCCTTGGTCCAAGAGGACA
ACCCTCCGCATCTCGAGCCGCGTCACGCTCGGGGGCACCGCCGGCGGCGG
CCGTGAGACAGCGACCAAAGACTGCCGTGGCGAAGAACCGTCGACACCGC
CCGCAATACAACCGCGGTCACGCCGGTAACACCAACAACGGCAACCCATT
GCTCAACCATCGAGAAACGGAGTTCCTGTTCGGGATCGGGGCGGCGCCCG
AAGTGGCGGCGGCGGCGGTGGCGGCGACGGTGGCTGAAGACGATGACGAC
GACGTCTCTCCGCGAGCGCCTTCGCTGCGAAAGACAACGCTCGGTCGGAT
GCTGCGGCGTTCTTCGGCTTCGTCGTTCTCACCGAGCAACGGAGGCGACG
TCTGCCGGCGCAACGTTAGACCCGAGTTGTCAGAATGCAGCAGCAGCAGC
GCTTCTTCCCTTTATCGCCGCCCGTTGTCCGCCGGCAACGCCTGCATCGG
CTCCTTGTTCTTGGAAGACGGCAAGCGAAGGGCAGGGAGAGGTACCGCGC
AAGCGATTGACGATGATACTTCTTGCGCCAAGCATAGGCTGGGCGCGGTG
CCTCGCGCCGGGAAGCATGCGGCGGTGGCACAGGCAGCAGCAACGAGGGC
GAGAAGAAGGCCCTCGAGCGCTGCGCCTGGGAACGGGTGCTCCCGGCGAA
GGGACCGGCCGTCGTCGCCGTCGCAGACATCCTTCCACCACTACGGTAGA
CACCAACAGACCGCCGGCGGCGGCCGAACCCGAACCCGCAAAGACAGCCC
CTCTTCCCGAAAAAGCGACGGAGGCGGTGGTCAAAGCCCGGCGGCGAGAC
CGTCGTTGGCACTAACGCGCGGAGATCGCCACGAGGCGGCGACGGCGGCG
CAGGGTTGCGGGTACCGCAGCGTCGGCGCGGCGCCGGTCGCGGGGGGGTT
GGCGGAGCGAGAACCCGCCGCGATGATGAACGCGCGCCAGGCCCTCGAGG
CGACCATCAGGGAGGCCGTCGACACCGTCTCTCCTGTCGAGCAGTTCGTG
AACGCGAGGAAAACCATCGCGGACATGAAGCAGATCAACACTAAGGATAG
CACCGGCGACATCCTCCTGTCCACCCAGGGGATGACAAAGGCGCGGATCG
CGGACGATTGTTGGTCGAGCGAGGCTCAGCGGCAGTACCCAGGGTGAGGG
ATGACAAAGGCGCGGATCGCGGACGATTGTTGGTCGAGCGAGGCTCAGCG
GCAGTACCCAGGGTGA
back to top