mRNA_E-siliculosus-1a_M_contig91.17233.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17233.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17233.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: D8LJR7_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR7_ECTSI)

HSP 1 Score: 470 bits (1210), Expect = 1.700e-164
Identity = 263/286 (91.96%), Postives = 267/286 (93.36%), Query Frame = 1 
Query:  268 MSGRDEEEVQAVPTATASSNADATQTQDEVPRRAPRD-VPGGTTIVLDSVKPSRGATTPVEGNRAKRLRHAPLADAALPTAAAETNGGPAGIPAGKEVAEGXXXXXXXXXXXXXX----RTQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSSTRR 1110
            MSGRDEEEVQAVPTATASSNADAT+  DEVPR A R  VP G  IV DSVKPSRGAT PV+GNRAKRLRHAPLADAALPTAAAETNGG AGIPAGKE  E XXXXXXXXXXXXXX    RTQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVN+DKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLF+LSGVKCRQHIPKQDKITIDFSSTRR
Sbjct:    1 MSGRDEEEVQAVPTATASSNADATE--DEVPRPASRTTVPSGGIIVRDSVKPSRGATPPVQGNRAKRLRHAPLADAALPTAAAETNGGRAGIPAGKEAEEXXXXXXXXXXXXXXXXXXXRTQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFDLSGVKCRQHIPKQDKITIDFSSTRR 284
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A7SGH8_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SGH8_NEMVE)

HSP 1 Score: 272 bits (695), Expect = 1.730e-87
Identity = 124/161 (77.02%), Postives = 144/161 (89.44%), Query Frame = 1 
Query:  619 KRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            KRTDY+ WDDYFMSVAFLSA RSKDPS+QVGACIVN++++IVGIGYNG P GCSDD+LPW R ADDELDTKYPYVCHAEMNAILNKNSADVKGC +YVALFPCNEC+K+IIQ+G++EVV++SDKY +  SMKASRRL +L+GVK RQ  P  +KI IDF+S
Sbjct:   42 KRTDYISWDDYFMSVAFLSAQRSKDPSSQVGACIVNKERKIVGIGYNGMPNGCSDDELPWNRHADDELDTKYPYVCHAEMNAILNKNSADVKGCTVYVALFPCNECSKIIIQAGLKEVVFVSDKYHDKPSMKASRRLLDLAGVKYRQFKPSMEKIVIDFNS 202
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A0A6H5KYL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL3_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 2.030e-86
Identity = 162/202 (80.20%), Postives = 167/202 (82.67%), Query Frame = 1 
Query:  268 MSGRDEEEVQAVPTATASSNADATQTQDEVPRRAPRDVPGGTTIVLDSVKPSRGATTPVEGNRA-KRLRHAPLADAALPTAAAETNGGPAGIPAGKEVAEGXXXXXXXXXXXXXX-----RTQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGA------CIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYP 837
            MSGRD++EVQ VPTATASSNAD  Q  DEVPRRAPRDV G TT V DS+KPSRGAT PVEGNRA KRLRHAPLADAALPT AAETN G A  P+GKE AEG     XXXXXXXXX     RTQKR DYLVWDDYFMSVAFLSAMRSKDPSTQVGA       IVNQDKRIVGIGYNGFPMGCSDDDLPWAR+ADDELDTKYP
Sbjct:    1 MSGRDKKEVQVVPTATASSNADTAQ--DEVPRRAPRDVLGETTAVRDSIKPSRGATLPVEGNRAAKRLRHAPLADAALPTEAAETNAGRARSPSGKEAAEGEGVAAXXXXXXXXXXXXGNRTQKRIDYLVWDDYFMSVAFLSAMRSKDPSTQVGAWLRCVTSIVNQDKRIVGIGYNGFPMGCSDDDLPWARRADDELDTKYP 200
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: UPI0006B0B9B3 (deoxycytidylate deaminase-like isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0B9B3)

HSP 1 Score: 268 bits (684), Expect = 4.960e-86
Identity = 122/164 (74.39%), Postives = 143/164 (87.20%), Query Frame = 1 
Query:  610 RTQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            ++QKR DYL W DYFM++AFLSAMRSKDP++QVGAC+VN++K+IVGIGYNG P GCSDDDLPW R+AD+ LDTKYPYVCHAEMNAILNKNSAD+K C IYVALFPCNECAKLIIQSGI+E+VYLSDKY     M ASR+L +++GVK RQHIP+  +I IDF S
Sbjct:   13 KSQKRVDYLQWSDYFMAIAFLSAMRSKDPNSQVGACVVNKEKKIVGIGYNGMPNGCSDDDLPWNREADNILDTKYPYVCHAEMNAILNKNSADLKDCTIYVALFPCNECAKLIIQSGIKEIVYLSDKYHNDYKMVASRQLLDMAGVKYRQHIPQHSQILIDFDS 176
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A0A6G0JC42_LARCR (Deoxycytidylate deaminase n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0JC42_LARCR)

HSP 1 Score: 266 bits (680), Expect = 1.740e-85
Identity = 123/163 (75.46%), Postives = 141/163 (86.50%), Query Frame = 1 
Query:  613 TQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            T+KR DYL W DYFM+VAFLSA RSKDPS+QVGACIVNQ+ +IVGIGYNG P GC DD LPW+R A+D LDTKYPYVCHAE+NAI+NKNSADVKGC IYVALFPCNECAKLIIQ+GI+EVVYLSDKY +T  M ASRRL  ++G++CRQ  PK+ KI IDF+S
Sbjct:   16 TRKREDYLEWPDYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWSRCAEDRLDTKYPYVCHAELNAIMNKNSADVKGCTIYVALFPCNECAKLIIQAGIKEVVYLSDKYHDTPEMVASRRLLSMAGIQCRQFNPKRTKIVIDFNS 178
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A0A835YZN4_9STRA (Deoxycytidylate deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN4_9STRA)

HSP 1 Score: 265 bits (677), Expect = 9.100e-85
Identity = 122/160 (76.25%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  622 RTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVN DKRIVGIGYNGFP GCSD+ LPWAR A +ELDTKYPYVCHAEMNAILNKN+ADV+GC IYVALFPC +CAKLIIQSGI  VVY+SDKYR+  +  ASRR+ +L+GV+CR+H+  + ++TIDF +
Sbjct:   34 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGA 193
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A0A7N6ALS8_ANATE (dCMP deaminase n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6ALS8_ANATE)

HSP 1 Score: 264 bits (675), Expect = 1.030e-84
Identity = 120/163 (73.62%), Postives = 142/163 (87.12%), Query Frame = 1 
Query:  613 TQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            T+KR DYL W +YFM+VAFLSA RSKDPS+QVGACIVNQ+ +IVGIGYNG P GC+DD LPW+R AD+ LDTKYPYVCHAE+NAI+NKNSADVKGC++YVALFPCNECAKLIIQ+GI+EVVYLSDKY +T  M ASR L  ++G++CRQ  PK+ KI IDF+S
Sbjct:   17 TKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCNDDLLPWSRSADNRLDTKYPYVCHAELNAIMNKNSADVKGCIMYVALFPCNECAKLIIQAGIKEVVYLSDKYHDTLEMTASRTLLNMAGIQCRQFTPKRTKIVIDFNS 179
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: UPI001447A3C1 (deoxycytidylate deaminase n=2 Tax=Eupercaria TaxID=1489922 RepID=UPI001447A3C1)

HSP 1 Score: 265 bits (677), Expect = 1.840e-84
Identity = 122/163 (74.85%), Postives = 141/163 (86.50%), Query Frame = 1 
Query:  613 TQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            T+KR DYL W DYFM+VAFLSA RSKDPS+QVGACIVN++ +IVGIGYNG P GC DD LPW+R ADD LDTKYPYVCHAE+NAI+NKNSADVKGC +YVALFPCNECAKLIIQ+GI+EVVYLSDKY E+  M ASRRL  ++GV+CRQ  PK+ +I IDF+S
Sbjct:   55 TKKREDYLEWPDYFMAVAFLSAQRSKDPSSQVGACIVNEENKIVGIGYNGMPNGCDDDLLPWSRSADDRLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVVYLSDKYHESPEMVASRRLLSMAGVQCRQFKPKRTEIVIDFNS 217
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A0A8K0A1Z7_BRALA (DCTD protein n=4 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A1Z7_BRALA)

HSP 1 Score: 265 bits (677), Expect = 2.180e-84
Identity = 120/162 (74.07%), Postives = 143/162 (88.27%), Query Frame = 1 
Query:  616 QKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            +KR+DYL WD+YFM+VAFLSA RSKDPS+QVGACIVN +K+IVGIGYNG P GCSDD LPW+R A+D LDTKYPYVCHAE+NAILNKNS+DVKGC +YVALFPCNECAKL+IQSGIRE+V++SDKYR T  M ASRRL +L+GVK  Q +PK+ +ITI+F +
Sbjct:   58 KKRSDYLEWDEYFMAVAFLSAQRSKDPSSQVGACIVNSEKKIVGIGYNGMPNGCSDDKLPWSRTAEDRLDTKYPYVCHAELNAILNKNSSDVKGCTMYVALFPCNECAKLVIQSGIREIVFMSDKYRHTPEMTASRRLLDLAGVKYTQFVPKRKQITINFDA 219
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Match: A0A671VX20_SPAAU (Deoxycytidylate deaminase-like n=8 Tax=Sparidae TaxID=8169 RepID=A0A671VX20_SPAAU)

HSP 1 Score: 263 bits (672), Expect = 2.920e-84
Identity = 120/163 (73.62%), Postives = 139/163 (85.28%), Query Frame = 1 
Query:  613 TQKRTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITIDFSS 1101
            T+KR DYL W +YFM+VAFLSA RSKDPS+QVGACIVNQ+ +IVGIGYNG P GC DD LPW R A+D LDTKYPYVCHAE+NAI+NKNSADVKGC +YVALFPCNECAKLIIQ+GI+EV+YLSDKY +T  M ASRRL  ++G++CRQ  PK+ KI IDF S
Sbjct:   17 TRKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWTRSANDRLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIYLSDKYHDTPEMVASRRLLSMAGIQCRQFEPKRTKIVIDFDS 179
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR7_ECTSI1.700e-16491.96CMP/dCMP-type deaminase domain-containing protein ... [more]
A7SGH8_NEMVE1.730e-8777.02Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A6H5KYL3_9PHAE2.030e-8680.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0006B0B9B34.960e-8674.39deoxycytidylate deaminase-like isoform X1 n=2 Tax=... [more]
A0A6G0JC42_LARCR1.740e-8575.46Deoxycytidylate deaminase n=2 Tax=Larimichthys cro... [more]
A0A835YZN4_9STRA9.100e-8576.25Deoxycytidylate deaminase n=1 Tax=Tribonema minus ... [more]
A0A7N6ALS8_ANATE1.030e-8473.62dCMP deaminase n=2 Tax=Anabas testudineus TaxID=64... [more]
UPI001447A3C11.840e-8474.85deoxycytidylate deaminase n=2 Tax=Eupercaria TaxID... [more]
A0A8K0A1Z7_BRALA2.180e-8474.07DCTD protein n=4 Tax=Branchiostoma lanceolatum Tax... [more]
A0A671VX20_SPAAU2.920e-8473.62Deoxycytidylate deaminase-like n=8 Tax=Sparidae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:629966..635482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1074
Model size1129
Exons7
Ec32 orthologEc-12_003010.1
Ec32 ortholog descriptionDeoxycytidylate deaminase-related
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.F
EC3.5.4.12
EggNOG OGsCOG2131@1,KOG3127@2759
EggNOG free text desc.dCMP deaminase activity
GOsGO:0003674,GO:0003824,GO:0004132,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
KEGG ModuleM00429
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ReactionR01663
KEGG koko:K01493
KEGG rclassRC00074
Preferred nameDCTD
Seed eggNOG ortholog2880.D8LJR7
Seed ortholog evalue5.5e-131
Seed ortholog score474.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936450.64485-UTR-E-siliculosus-1a_M_contig91:629965..6300041622936450.64485-UTR-E-siliculosus-1a_M_contig91:629965..630004Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 629966..630004 +
1696251084.5135949-UTR-E-siliculosus-1a_M_contig91:629965..6300041696251084.5135949-UTR-E-siliculosus-1a_M_contig91:629965..630004Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 629966..630004 +
1622936450.930986-UTR-E-siliculosus-1a_M_contig91:635466..6354821622936450.930986-UTR-E-siliculosus-1a_M_contig91:635466..635482Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 635467..635482 +
1696251084.5847208-UTR-E-siliculosus-1a_M_contig91:635466..6354821696251084.5847208-UTR-E-siliculosus-1a_M_contig91:635466..635482Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 635467..635482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936450.6703012-CDS-E-siliculosus-1a_M_contig91:630004..6302411622936450.6703012-CDS-E-siliculosus-1a_M_contig91:630004..630241Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 630005..630241 +
1696251084.5256908-CDS-E-siliculosus-1a_M_contig91:630004..6302411696251084.5256908-CDS-E-siliculosus-1a_M_contig91:630004..630241Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 630005..630241 +
1622936450.688606-CDS-E-siliculosus-1a_M_contig91:630938..6311191622936450.688606-CDS-E-siliculosus-1a_M_contig91:630938..631119Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 630939..631119 +
1696251084.5346746-CDS-E-siliculosus-1a_M_contig91:630938..6311191696251084.5346746-CDS-E-siliculosus-1a_M_contig91:630938..631119Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 630939..631119 +
1622936450.756533-CDS-E-siliculosus-1a_M_contig91:631540..6317991622936450.756533-CDS-E-siliculosus-1a_M_contig91:631540..631799Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 631541..631799 +
1696251084.5430138-CDS-E-siliculosus-1a_M_contig91:631540..6317991696251084.5430138-CDS-E-siliculosus-1a_M_contig91:631540..631799Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 631541..631799 +
1622936450.8160524-CDS-E-siliculosus-1a_M_contig91:632324..6324451622936450.8160524-CDS-E-siliculosus-1a_M_contig91:632324..632445Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 632325..632445 +
1696251084.5513453-CDS-E-siliculosus-1a_M_contig91:632324..6324451696251084.5513453-CDS-E-siliculosus-1a_M_contig91:632324..632445Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 632325..632445 +
1622936450.864915-CDS-E-siliculosus-1a_M_contig91:633762..6338281622936450.864915-CDS-E-siliculosus-1a_M_contig91:633762..633828Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 633763..633828 +
1696251084.5592222-CDS-E-siliculosus-1a_M_contig91:633762..6338281696251084.5592222-CDS-E-siliculosus-1a_M_contig91:633762..633828Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 633763..633828 +
1622936450.8797283-CDS-E-siliculosus-1a_M_contig91:634180..6342671622936450.8797283-CDS-E-siliculosus-1a_M_contig91:634180..634267Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 634181..634267 +
1696251084.567889-CDS-E-siliculosus-1a_M_contig91:634180..6342671696251084.567889-CDS-E-siliculosus-1a_M_contig91:634180..634267Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 634181..634267 +
1622936450.9143436-CDS-E-siliculosus-1a_M_contig91:635343..6354661622936450.9143436-CDS-E-siliculosus-1a_M_contig91:635343..635466Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 635344..635466 +
1696251084.5761242-CDS-E-siliculosus-1a_M_contig91:635343..6354661696251084.5761242-CDS-E-siliculosus-1a_M_contig91:635343..635466Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 635344..635466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17233.1prot_E-siliculosus-1a_M_contig91.17233.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 630005..635466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17233.1

>prot_E-siliculosus-1a_M_contig91.17233.1 ID=prot_E-siliculosus-1a_M_contig91.17233.1|Name=mRNA_E-siliculosus-1a_M_contig91.17233.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=358bp
MVERKPQPSAATPSSLLPSASFLRGLLVLLSVSVCCSSSSSSSCDLRIDG
GGGSAGAGGALCSLGHCLPQAHAGRTMSGRDEEEVQAVPTATASSNADAT
QTQDEVPRRAPRDVPGGTTIVLDSVKPSRGATTPVEGNRAKRLRHAPLAD
AALPTAAAETNGGPAGIPAGKEVAEGGGGAAGGVAAGGGGRTQKRTDYLV
WDDYFMSVAFLSAMRSKDPSTQVGACIVNQDKRIVGIGYNGFPMGCSDDD
LPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECA
KLIIQSGIREVVYLSDKYRETNSMKASRRLFELSGVKCRQHIPKQDKITI
DFSSTRR*
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mRNA from alignment at E-siliculosus-1a_M_contig91:629966..635482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17233.1 ID=mRNA_E-siliculosus-1a_M_contig91.17233.1|Name=mRNA_E-siliculosus-1a_M_contig91.17233.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5517bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:629966..635482+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGGGTGCCTTCAACAAGTTGGTGTGTTGGTCCCGCCTGGATGGTGGAAAG
AAAGCCCCAGCCCAGTGCAGCTACGCCTTCTTCTCTACTTCCCTCTGCTA
GTTTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCGTCTGCTGCTCA
TCATCATCGTCATCATCTTGTGACTTGCGGATCGACGGCGGCGGTGGCAG
TGCTGGGGCTGGAGGTGCACTCTGTTCCCTAGGGCACTGTCTCCCGCAGG
CGCACGCCGGGCGGACCATGAGTGGGGTGAGTGCGGACGTTCCTCTGCAA
AGAGAAGGCACAGCTCACATCAAGGCTGTCCTTGTTTCTCCCGATACGAT
ACGCACAGCTTGGTGTACGCAGACCGTCCCAGCACCAAAGCCGCCGTGTC
CAGATGTACATACAACAGCTGTTGTAGATATGCGGCTCTCGCTTGCGCGG
GTGTCCCACCCGCGACACGACATGGGTCGTAGCCTACATGCTAGATGTTA
CGGTTGTTCGGTTTGTAGCCTGAGCAGTAGCATCAGCAACAGCGTACTGA
AACACGAGCTCTGTCCCAACAAGCAATCACTAACCAAGTCCGCAAGATTC
CGCCAGTTGTTTGAATTTTTGAATTTCATGCTGGACGTACAATACAGCTT
AGTACATGCATCTGATTAGAGAACAGCGGCAGTCGTCGTGACAGCTGCAG
TAGAGGATGTGTAGAATGTTTGAGAGTACGCAGAGCGTGGCGCCCGACGC
GTCTCTCACCAACGATGGCGTGCCTCGTGGTGCGTAGATGCAGATCGTAG
CATTCAGAGGAGGTGCGGCTGGAAAGCGACACAAACGTGATGCATACGCT
GCAAAGGGCGGCGGAACGTTGTTTGTTTGTGATTGTAGCATCCACCGCCA
GTCCTCCTTACCAAGCTTGGCATTCTGCACTCCGCTGCTGCTGCTGCCTC
TGATGTTGCTCGGTGCGTTCAAGCGCGACGAAGAAGAAGTGCAAGCCGTC
CCCACGGCCACGGCCAGCTCCAACGCCGACGCCACCCAAACCCAAGACGA
GGTGCCACGTCGGGCACCACGTGATGTACCTGGCGGGACGACCATTGTCC
TCGATTCTGTCAAGCCATCTCGAGGCGCCACCACCCCCGTCGAGGGGAAC
AGAGGTAAAACTCGCCCGCCGTACACGCGTGGTAGAGACGGGAAACGTGT
GTAGCGGACAGCAGTAGCGTTAGGGCCAGGTCAGAAGGAGTCGGGGGACA
AGTAACATTTTGAAGAACGGCGCACTTGCTGCTCCGCGGCGGTCTGTCAC
GCAGCGCAGGGACAGAGTTGTGCGGCACGGCAGCAGTCAGTGGGAAGACT
GCGCAGCCCGGGTACGTTGAGAATTGCCGTATGATAAAGAAAGGCGCTTC
AGCAAGGACGGGCCTACTAGGCCCAACACCCCCATGACCCAGAACGATAT
GTGTTCCTCCCGCCTTCACCGCAAACGCCGCCGTCGCCTGTTACACATGT
GGCCACTCCCTCCACGGGGACCCCGCCGCCGCCGACGACGACGATGACGA
CGACGGCATTTACTGCATCCAGCAGCAAAACGCCTCCGGCATGCGCCCCT
TGCGGACGCCGCGTTGCCGACCGCGGCAGCAGAGACCAACGGTGGGCCGG
CGGGGATACCGGCTGGTAAGGAGGTGGCGGAGGGAGGGGGCGGTGCGGCG
GGAGGCGTCGCCGCCGGCGGCGGCGGCCGGACGCAGAAGAGGACTGATTA
CCTGGTGTGGGATGACTACTTCATGTCGGTCGCGTTTCTCAGCGCGATGC
GGTCGAAGGATCCGTCTACCCAGGTCGGGGCTTGGTGAGTTGGCGGGGTG
ATCTCGCAGCTGCTAGTGGCAAGTACCCGCCGTTGTCAACACACCATCAC
CAATAATAAGGGTGGTTTGTGTTCCAGTGGCGTGTGCCACTAGTGTATGG
TTTACTCGTGAGCGTTATTTTAGTGCTATTAATTGCGTTTGTTTGCAGAT
TGCGTTGCATGACCAGGTGTTTCCAGCAACGCCAGAGGCTTGTTTTTCGG
GAGCCCGCACCGCGTGCGTCCCATGTATCTCCTCCCCTGGACCCTCTTCC
TCGCTGGAACCACGTGGTTTCCCCCTCTTTCTGAGCTGAAGGATTGAGAA
CGGTGGCGTTTGCCCCTGCTGCCGCCCCCACATCGCCGCTCCCTGCTCGT
GGCCCGATACAAACGCCTCACATGGAGTATGATGTAACACTTTCGCGTGC
GTTCGATGCTTCTGGTTGTTCTCCTTCGACCTGCAACTCGACACTTTCGT
TTCTTCGACACCAACGGCAATGCGGTCAACGACGACGACTATGACGACGA
CAACAACAGCATCGTAAACCAAGACAAGCGCATCGTGGGCATCGGGTACA
ACGGCTTCCCGATGGGATGCAGCGACGACGATCTGCCGTGGGCGCGCCAG
GCAGACGACGAGCTGGACACCAAGTACCCGGTGAGGCCGGTCGGCATGTT
CCTCCTAGCCCGTTGTCTGAGCACGCCGGCTCTGTTCGGTGCAAGAACTC
GTGTTTGTGTGTTTGGCGGTTGACCCAACTTTAACACCCGATCCGTGTGG
AGATATGTAGACGTGCTTCTATTTATCAGACCATCAGTTGTTGACATACA
TACATGCGCAGAGCCTCATGCGGAGGTGAGCTAACGAGCCCAGGGCGCAG
GGGACTCCGTAACGCCCTACTCGTCGGATCACACTATATATGACAACCCC
CAGAGGCTCCGTGTTGTCATACCGCAACCGCCGTGTACACCAAACAATTC
GCTTGGTTATGAAGCGCTGCTGTCTTCTGTCGCTGGTGCTGCTGCTTTGG
TGGTGCCCTTGCTTGCTGGTGCAAGAATCAAATACACCGGTTGAAGAAAT
ACACCGTTTTTGGTTTCGTCGTCGTGCTGCTGAGGTAGTAGTTTTGTTGA
TACGGATTTGCGTTGTGTTCAGGAAAAAAATATGGGAAAAATTGTGTCAG
TTCCGGTGAGAGAAGGCGATGTAGTTGGGCAGAGGTCGCCATCGCGGTGC
TCCTGCTGGAACGGGCCGGTGTTTTCGAGGGTCGCTCAGCTCCTGTCGCG
GGCGATGTACACGGGGTCGTTCACCCTTGCCCCTCCGTTCCCGAACCGGG
TGTCGAGGAAGCGTTGCAGCGAGGCGGAGTATAATCTATGAGATGCCGCG
TTTTCTCCCCATGGCAAGGGGCCGGGAGCAACCGCAGCAAAACGTGGGCA
CACGTGGGTGCCGGAACGAAGGGCTACAATGTGAACGTATGGTACACAAA
AGTGTCGGCTGTGATCCCCCCCCCCCTCCCCTGAGTTGTACAGGAAGGAA
AGAGAGGATCTCGAGGAGGACATGAGGACATGAGACAGAGAGGGTGTGAC
ATGGACAAGTTTGGTAAATTAGACAACAGCGAAAAAACGATCGCGATAAT
TGGGGATAGATGGTGGGCACAAGAGGCCCTAGAGGACGGGGATAAGATGT
GCAAGAAATTTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAAT
GTTGGTGGTGTCTCTAGTAGGGGTAGGAACGGTACTCCGTCTCGAAAGGG
ACGCGTGGTCAATGGTCAAATGACTAAGGCAAGCAACAAATGAGTACCCC
CCCACTCCCCTGCCGTCCCCTCACTCGTTGCCCCGGTGCCCCCCTCCTCT
TCCCTCCTGTGCTCGCCGTCTCGGGCCACACGTTTGCGTGGACGCGAAAC
CTGTCTTCTTCTGTTGGCACCGGGCCCGTTTCGCCTGCTGCTTGCAGTAC
GTCTGCCACGCGGAGATGAACGCGATTCTCAACAAGAACAGCGCTGACGT
CAAAGGGTGCCTGGTAAGCGTGTGTGAGAGAGCGAAGAGAGAAAGAGAAA
CGACGGGCCGGAGGCTTTGTTTCATGCATTTTCGTTTAGCTGGTACTCTG
CTGTATTGCCGCCAAACGCACGATAAAGATTACCACACTCCTCTATTTTC
GTGCCTGCGGTCGCGGTACTTTTAGCCTACAGTACCACCGCTACCCTTGC
GCTATCCGTGAGTCCCCCTGTCACCGTTAGACGCCCCTTGCTGGCAAACT
TCAGGCTGCAGCAGCGGACAGCGTGTAATCCCCTACTTTCCTCCGTTGAG
ATTGGCGACCCGATTTGCGCCCGTCACCCCCCTCGGCTGGTGCAACTCAC
GTGGACAAAAAACAGATATACGTGGCCCTATTCCCGTGCAATGAGTGCGC
CAAGCTCATCATCCAGAGCGGCATACGAGAGGTGGTGTACCTCTCCGATA
AGGTACGTGTGGTGGTGGTCCTGAGTATGTTGCGGCGTGTGGGAGTATGT
TGAGAAGAGGGAAATGGACTGTACGAGCCGTGAAGCAGAGATGGGAACAA
AAGGTGACGTTCTTGTGTGCTTATTTATTTCCAGGCGTGAAAGTAGTTGC
GTGAGTGTTTCTTGCATTGGCATCCTGTTCGTTGCGTCTTGAGGTAATCG
AGGTTTTTGACGATCAGTCCCCGGGGGCTAGCATCGACCGCGCTAACCTG
CTGACCAAGTCGTGGTTGTTGTTTTCTTTTGAGCAAACGTACCGTGTGTT
GCGTAAGATACCACACCCCTGACCGACCGTTTTTCAAAGCTTGACTGCTC
TGCAGGAACCACAGCAGTAGTGACAGTGCCGACCATGGCGGCCTTGGAAC
CGTCTCGTGGAGGGCCTTTCGTTTCGTTTGATTTTGACGTCCTCTTCGTC
GTGGGGATAATCGAGCATTGATAGTTGGCCCACGTTAGTGTACGGTGTAT
TCGCGATACGAACCACATCGTACCGTATGTATATTGTCTTGACGACTTGT
GTTGTGGCAGCTCGGCGTTTGTTGACGCGCCGTTCCGATAGTACCGGACA
CGTGTCTACTCGGCGCGAGTTCCGAATTCTCTCTCTTTGGACATGGACCA
ATCGTACTATTCGGCGGTTTGTTGTATGCGACGTACGAGGAATGGCGTTT
TGGCGCTCCGCTGCGCTCGTTAATCAATTCTGGGTGAGGTAGTCATGGCT
TGGCATAGTCGGCTAAATTGTATTGTATCGACTCGGCTGTTTTTGTTGTC
GTTGTTGTTGTCGTTGTCGTTCTGGTCAACTTGTACTCTCTGTCCTTCTT
TGGGCTATTTCACACAAGCCTTCCTTCCCCGACAACTCCGCGGTCTTGCG
AAACCACTGCCTTACTTCCTGCCCTTTTTCTGCCTCCTGCCTGCCTTGCA
TTGCGGGCCCTCTGTGTCAGCCCTCATCTCCAGCAATCTGACAACGACCG
CCCCCCCCCCCCGTTGCAAATCCCGTTTCTTGGCTCGCTTTGCCCGATTC
AAAACAACAACAAAAAATTGGCGTCCAGTACCGCGAGACCAACAGCATGA
AGGCGTCGCGAAGGCTCTTCGAACTTTCGGGCGTGAAATGCCGGCAACAC
ATCCCCAAGCAGGACAAGATTACCATCGACTTCTCGTCCACCCGCAGATA
GCCTGACCGGGGTCTCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:629966..635482+

>mRNA_E-siliculosus-1a_M_contig91.17233.1 ID=mRNA_E-siliculosus-1a_M_contig91.17233.1|Name=mRNA_E-siliculosus-1a_M_contig91.17233.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2148bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:629966..635482+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGGAAAGAAAGCCCCAGCCCAGTGCAGCTACGCCTTCTTCTCTACT
TCCCTCTGCTAGTTTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCG
TCTGCTGCTCATCATCATCGTCATCATCTTGTGACTTGCGGATCGACGGC
GGCGGTGGCAGTGCTGGGGCTGGAGGTGCACTCTGTTCCCTAGGGCACTG
TCTCCCGCAGGCGCACGCCGGGCGGACCATGAGTGGGATGGTGGAAAGAA
AGCCCCAGCCCAGTGCAGCTACGCCTTCTTCTCTACTTCCCTCTGCTAGT
TTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCGTCTGCTGCTCATC
ATCATCGTCATCATCTTGTGACTTGCGGATCGACGGCGGCGGTGGCAGTG
CTGGGGCTGGAGGTGCACTCTGTTCCCTAGGGCACTGTCTCCCGCAGGCG
CACGCCGGGCGGACCATGAGTGGGCGCGACGAAGAAGAAGTGCAAGCCGT
CCCCACGGCCACGGCCAGCTCCAACGCCGACGCCACCCAAACCCAAGACG
AGGTGCCACGTCGGGCACCACGTGATGTACCTGGCGGGACGACCATTGTC
CTCGATTCTGTCAAGCCATCTCGAGGCGCCACCACCCCCGTCGAGGGGAA
CAGAGCGCGACGAAGAAGAAGTGCAAGCCGTCCCCACGGCCACGGCCAGC
TCCAACGCCGACGCCACCCAAACCCAAGACGAGGTGCCACGTCGGGCACC
ACGTGATGTACCTGGCGGGACGACCATTGTCCTCGATTCTGTCAAGCCAT
CTCGAGGCGCCACCACCCCCGTCGAGGGGAACAGAGCAAAACGCCTCCGG
CATGCGCCCCTTGCGGACGCCGCGTTGCCGACCGCGGCAGCAGAGACCAA
CGGTGGGCCGGCGGGGATACCGGCTGGTAAGGAGGTGGCGGAGGGAGGGG
GCGGTGCGGCGGGAGGCGTCGCCGCCGGCGGCGGCGGCCGGACGCAGAAG
AGGACTGATTACCTGGTGTGGGATGACTACTTCATGTCGGTCGCGTTTCT
CAGCGCGATGCGGTCGAAGGATCCGTCTACCCAGGTCGGGGCTTGCAAAA
CGCCTCCGGCATGCGCCCCTTGCGGACGCCGCGTTGCCGACCGCGGCAGC
AGAGACCAACGGTGGGCCGGCGGGGATACCGGCTGGTAAGGAGGTGGCGG
AGGGAGGGGGCGGTGCGGCGGGAGGCGTCGCCGCCGGCGGCGGCGGCCGG
ACGCAGAAGAGGACTGATTACCTGGTGTGGGATGACTACTTCATGTCGGT
CGCGTTTCTCAGCGCGATGCGGTCGAAGGATCCGTCTACCCAGGTCGGGG
CTTGCATCGTAAACCAAGACAAGCGCATCGTGGGCATCGGGTACAACGGC
TTCCCGATGGGATGCAGCGACGACGATCTGCCGTGGGCGCGCCAGGCAGA
CGACGAGCTGGACACCAAGTACCCGCATCGTAAACCAAGACAAGCGCATC
GTGGGCATCGGGTACAACGGCTTCCCGATGGGATGCAGCGACGACGATCT
GCCGTGGGCGCGCCAGGCAGACGACGAGCTGGACACCAAGTACCCGTACG
TCTGCCACGCGGAGATGAACGCGATTCTCAACAAGAACAGCGCTGACGTC
AAAGGGTGCCTGTACGTCTGCCACGCGGAGATGAACGCGATTCTCAACAA
GAACAGCGCTGACGTCAAAGGGTGCCTGATATACGTGGCCCTATTCCCGT
GCAATGAGTGCGCCAAGCTCATCATCCAGAGCGGCATACGAGAGGTGGTG
TACCTCTCCGATAAGATATACGTGGCCCTATTCCCGTGCAATGAGTGCGC
CAAGCTCATCATCCAGAGCGGCATACGAGAGGTGGTGTACCTCTCCGATA
AGTACCGCGAGACCAACAGCATGAAGGCGTCGCGAAGGCTCTTCGAACTT
TCGGGCGTGAAATGCCGGCAACACATCCCCAAGCAGGACAAGATTACCAT
CGACTTCTCGTCCACCCGCAGATAGTACCGCGAGACCAACAGCATGAAGG
CGTCGCGAAGGCTCTTCGAACTTTCGGGCGTGAAATGCCGGCAACACATC
CCCAAGCAGGACAAGATTACCATCGACTTCTCGTCCACCCGCAGATAG
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