mRNA_E-siliculosus-1a_M_contig91.17225.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D8LJQ9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ9_ECTSI) HSP 1 Score: 485 bits (1248), Expect = 1.880e-168 Identity = 288/317 (90.85%), Postives = 293/317 (92.43%), Query Frame = 3
Query: 348 MAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLARRETRSTTRTASSCVSDGEDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDEDXXXXXXXXXXXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAG 1298
MAGSSMVVSY+AAVNQSLFILWG+TYSLDWFW+SLLLF VLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVA LIIPIYQDMTLEVWE+I KQ D LA+ATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKCGLYFEV WTG NLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCT RAVLARRETRS EDVSYSAKATADIRGSSRAVRVASRKLEEG YG GVDEDXXXXXXXXXXXXXXXXXXXXXXXX TSLYDEPPPANLSPSPSPGDPGAG
Sbjct: 1 MAGSSMVVSYLAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVALLIIPIYQDMTLEVWEVIAKQVDLLASATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVDMWTGGNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTGRAVLARRETRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGFYGGGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPSPSPGDPGAG 305
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE) HSP 1 Score: 422 bits (1086), Expect = 7.020e-142 Identity = 253/317 (79.81%), Postives = 259/317 (81.70%), Query Frame = 3
Query: 348 MAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLARRETRSTTRTASSCVSDGEDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDEDXXXXXXXXXXXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAG 1298
MAGSSMVVSYVAAVNQSLFILWG+TYSLDWFW+SLLLF VLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSA VAFLI+PIYQDMTLEVW KVDDLFNISRELIIVTILFLILAIGIKCGLY+EV WTG NLNFFITAAVFGVSVVGPLR LAVDPLAGSKQRC DRAVLARR+TRS EDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDE+ XXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAG
Sbjct: 1 MAGSSMVVSYVAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSATVVAFLIVPIYQDMTLEVW-----------------------------KVDDLFNISRELIIVTILFLILAIGIKCGLYYEVDMWTGGNLNFFITAAVFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAG 276
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 249 bits (637), Expect = 5.680e-73 Identity = 145/271 (53.51%), Postives = 183/271 (67.53%), Query Frame = 3
Query: 201 TYSTAEIVMAWLRLVLAVIFTVFGTYALVLLYRSRYILDIRARSARLVLMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGI----KCGLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLARRETRST 1001
+Y+ + +A +RL L F V GTYALV YRSR+ILDIR RSA LV + G S+++S + VN + I+W S LDWFW+SLLLFFV P +FGSYICRALRLAV+F+PRAK ALPWLIPERN+L L ++ L IPIY + TLEVW+ I KQ L VLA L CI+PFIR VDDLFNIS ELI VT+ +++ I K G FE W SN++ A +F +S+V PLRRLA+DPLA +K+ DR +L+R E+ ST
Sbjct: 55 SYNRTDKALALVRLGLGCCFIVLGTYALVRFYRSRWILDIRTRSAHLVTLQGVSLLLSMLVTVNGATTIVWDS--GLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKSALPWLIPERNYLAVLLLASIGILAIPIYHEYTLEVWDAIPKQTSILKAQARVLAVMLVCIYPFIRNVDDLFNISTELITVTVTIVVVTIVQEVVDKWGGNFE-QRWLTSNISVVFVAVLFCISIVAPLRRLALDPLAATKRNYADRVLLSRTESHST 322
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 246 bits (628), Expect = 1.490e-72 Identity = 145/280 (51.79%), Postives = 191/280 (68.21%), Query Frame = 3
Query: 327 RSARLVLMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKC-----GLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLARRETRSTTRTASSCVSDGEDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDED 1151
RSA LV++ G ++++ V AVN S+ ++W S LDWFW+SLLLFF+ P + GSYICRALRLAV+FHPRAK+ALPWLIPERN++ L ++V + IPIYQ+ TLEVWEII KQ L T LV A TLACI+PFIR VDDLFNIS+EL++VT+ + LA+ K G+Y + W G+N++ FI A +FG+S+V PLRRLA+DPLA +K+ DR +L+R ST RTAS VS G + + IR +S +LEEG G +D+D
Sbjct: 3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDS--GLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTLEVWEIIPKQTTILTTEALVFAVTLACIYPFIRNVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYEQ--RWVGNNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASG-VSSGRS-----RDPSRIRANSEE----EARLEEGDLGGVLDKD 268
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.400e-64 Identity = 133/276 (48.19%), Postives = 178/276 (64.49%), Query Frame = 3
Query: 201 TYSTAEIVMAWLRLVLAVIFTVFGTYALVLLYRSRYILDIRARSARLVLMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAI----GIKCGLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLARRETRSTTRTAS 1016
+Y+ + +A +RL + F V GT ALV YRS++ILDIR RSA LV++ G + +++ + VN S ++W + DWFW+SLLLFF+ P +FGSYICRALRLAV+FHPR K+ALPWLIPE N++ L +V L IPIY + TL VW+ I+KQ + L VLA LACI+PFIR VDDLF+IS ELIIVT +++ G G Y W +N++ +FGVS++ PLRRLA DPLA ++ +R + R E ST R AS
Sbjct: 44 SYTRTDKALALVRLGVGCCFIVLGTCALVRFYRSKWILDIRTRSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGF--DWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTLGVWDAISKQTNILKIEARVLAVALACIYPFIRNVDDLFSISTELIIVTATIVLITSEEVDGQWWGPYER--RWFANNMSVVFMIILFGVSIIAPLRRLASDPLAATRHNYANRVLPNRTEPHSTARRAS 315
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D8LJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI) HSP 1 Score: 214 bits (544), Expect = 6.280e-64 Identity = 118/207 (57.00%), Postives = 145/207 (70.05%), Query Frame = 3
Query: 378 VAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKC-----GLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLAR 983
+AAVN ++ I+W S LDWFWVSLLLFFV P +FGSYICRALRLAV+FHP+AK+ALPWLIPERN++ L + L IP+Y + TLEVWEII KQ D L ++ A ACI+PFIR VDDLF+IS+EL IVT ++LA+G K G+Y W G+NL A VF VSVV PLRRLA DPLA +K+ DR +L+R
Sbjct: 2 LAAVNGAINIVWDS--GLDWFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEVWEIIPKQTDILIWVSIAFAVVQACIYPFIRNVDDLFSISKELAIVTAAVILLAVGQKLEGDYGGVYER--RWLGNNLFLLFAAVVFSVSVVDPLRRLAFDPLAATKRNYADRVLLSR 204
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI) HSP 1 Score: 216 bits (549), Expect = 3.730e-61 Identity = 124/263 (47.15%), Postives = 166/263 (63.12%), Query Frame = 3
Query: 201 TYSTAEIVMAWLRLVLAVIFTVFGTYALVLLYRSRYILDIRARSARLVLMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAI-----GIKCGLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAV 974
+Y+ + +A RL + F V GT AL YR + ILDIR RSA LV++ G + +++ + VN + ++W + + DWFW SL LFF+ P +FG YICRALRLAV+FHPR K+ALPWLIPERN++ L +V L IPIY + TL VW+ I+KQ L VLA LACI+PFIR VDDLF+IS ELIIVT ++ I G+ G Y W +NL+ +FGVS+V PLRRLA DP A +++ +R +
Sbjct: 44 SYTRTDKALALFRLGVGCCFIVLGTCALARFYRLKQILDIRTRSAYLVMVGGVAGILTMLVTVNDATTVIWDTGF--DWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFIRNVDDLFSISTELIIVTATIGLITIVQEIDGLWGGCYER--RWLANNLSVLFMIVLFGVSIVAPLRRLASDPFAATRRNYANRVL 302
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE) HSP 1 Score: 200 bits (508), Expect = 7.610e-55 Identity = 119/236 (50.42%), Postives = 150/236 (63.56%), Query Frame = 3
Query: 324 ARSARLVLMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVGAWTGSNLNFFITAAVFGV----------SVVGPLRRLAVDPLAGSKQRCTDRAVLARRETRST 1001
ARSA LV + G S++ S + VN + I+W S LDWFW+SLLLFFV P +FGSYICRALRLAV+F+PRAK+ALPWLIPERN+L L ++ L IPIYQ+ TLEVW+ I KQ L T VLA L CI+PFIR VDDLFNIS+ELI VT+ ++ ++ + + T F SVV PLRRLA+DPLA +K+ DR +L+R E+ ST
Sbjct: 18 ARSAHLVTLQGVSLLFSMLVTVNDATTIVWDS--GLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKRALPWLIPERNYLAVLLLASIGILAIPIYQEYTLEVWDAIPKQTSILKTQARVLAVMLVCIYPFIRNVDDLFNISKELITVTVTIAVVTCEAHSFVHRSTHVESCLQQHVPPTTKRFPYPMSPSNLSTRSVVAPLRRLALDPLAATKRNYADRVLLSRTESHST 251
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.060e-41 Identity = 81/147 (55.10%), Postives = 106/147 (72.11%), Query Frame = 3
Query: 345 LMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVT 785
++ G + +++ + VN + ++W + + DWFW SLLLFF+ P +FGSYICRALRLAV+FHPR K+ALPWL+PERN++ L +V L IPIY + TL VW+ I+KQ L VLA LACI+PFIR VDDLF+IS ELIIVT
Sbjct: 1 MVGGVAGILTMLVTVNDATTVIWDTGF--DWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFIRNVDDLFSISTELIIVT 145
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI) HSP 1 Score: 148 bits (374), Expect = 2.770e-36 Identity = 100/227 (44.05%), Postives = 133/227 (58.59%), Query Frame = 3
Query: 324 ARSARLVLMAGSSMVVSYVAAVNQSLFILWGSTYSLDWFWVSLLLFFVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPE-RNHLFFLSAMAVAFLIIPIYQDMTLEVWEIITKQADSLATATLVLAGTLACIFPFIRKVDDLFNISRELIIVTILFLILAIGI----KCGLYFEVGAWTGSNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTDRAVLARRE 989
ARSA LV++ G +++ + +N S+ ++W LD+FWVSLLLF V+P + GSYICR LRLAV+FHPRAK+ALPWLIP R+ + Y D D L+ A LAC FPFIR VDDLF+IS+E+IIVT +ILAI K G +E W +++ A +FGVS+V PLRRLA DPLA ++ +R +L+R E
Sbjct: 2 ARSAYLVMVEGVCALLTMLVTLNSSINVVWDC--GLDYFWVSLLLFLVVPTLLGSYICRVLRLAVVFHPRAKRALPWLIPGGRSDAGY-------------YPD-------------DDLSA----FAVALACTFPFIRNVDDLFSISKEIIIVTAAVVILAIEQNVVDKWGGVYE-RRWIDKSVSILFVAVLFGVSIVDPLRRLAFDPLAATQHNHANRILLSRTE 195 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig91.17225.1 >prot_E-siliculosus-1a_M_contig91.17225.1 ID=prot_E-siliculosus-1a_M_contig91.17225.1|Name=mRNA_E-siliculosus-1a_M_contig91.17225.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=410bp MSYWEEKYGGGGSSSGAGYGGSASSASQYEGIPSSIADGTAFEITYSTAEback to top mRNA from alignment at E-siliculosus-1a_M_contig91:546273..554219- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig91.17225.1 ID=mRNA_E-siliculosus-1a_M_contig91.17225.1|Name=mRNA_E-siliculosus-1a_M_contig91.17225.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7947bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:546273..554219- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:546273..554219- >mRNA_E-siliculosus-1a_M_contig91.17225.1 ID=mRNA_E-siliculosus-1a_M_contig91.17225.1|Name=mRNA_E-siliculosus-1a_M_contig91.17225.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2460bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:546273..554219- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |