mRNA_E-siliculosus-1a_M_contig91.17213.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17213.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17213.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:312163..312523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size339
Model size361
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936436.074367-UTR-E-siliculosus-1a_M_contig91:312162..3121841622936436.074367-UTR-E-siliculosus-1a_M_contig91:312162..312184Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 312163..312184 +
1696251077.6348221-UTR-E-siliculosus-1a_M_contig91:312162..3121841696251077.6348221-UTR-E-siliculosus-1a_M_contig91:312162..312184Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 312163..312184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936436.0888805-CDS-E-siliculosus-1a_M_contig91:312184..3125231622936436.0888805-CDS-E-siliculosus-1a_M_contig91:312184..312523Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 312185..312523 +
1696251077.6548507-CDS-E-siliculosus-1a_M_contig91:312184..3125231696251077.6548507-CDS-E-siliculosus-1a_M_contig91:312184..312523Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 312185..312523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17213.1prot_E-siliculosus-1a_M_contig91.17213.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 312185..312523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17213.1

>prot_E-siliculosus-1a_M_contig91.17213.1 ID=prot_E-siliculosus-1a_M_contig91.17213.1|Name=mRNA_E-siliculosus-1a_M_contig91.17213.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=113bp
MFRHACTDLLGVLRLLMFCVVRVRCYFWVPLFACLSSFLNTGVAYDQAKR
GLHHHVDAASRFVLRTNEGMNLPSLMRVLLKFSYAGRMSKSRVACVHNKM
RAGCKVCLRERAI
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mRNA from alignment at E-siliculosus-1a_M_contig91:312163..312523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17213.1 ID=mRNA_E-siliculosus-1a_M_contig91.17213.1|Name=mRNA_E-siliculosus-1a_M_contig91.17213.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=361bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:312163..312523+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCCTGGAGGGCGTTCTCAAAGGATGTTTCGGCATGCATGTACGGACCTCC
TTGGTGTACTTCGTCTACTCATGTTTTGTGTCGTGCGTGTCCGTTGTTAC
TTTTGGGTCCCATTGTTTGCCTGTCTCTCTTCGTTTCTGAATACAGGCGT
AGCCTATGACCAAGCCAAGCGTGGACTACATCATCATGTCGACGCCGCCT
CGCGATTTGTTTTGCGCACGAATGAGGGCATGAACCTTCCATCTTTAATG
CGTGTACTCTTGAAGTTTTCTTACGCTGGTAGGATGAGTAAAAGCCGTGT
TGCTTGCGTACACAACAAGATGCGTGCTGGTTGCAAGGTTTGTTTGCGCG
AACGAGCGATA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:312163..312523+

>mRNA_E-siliculosus-1a_M_contig91.17213.1 ID=mRNA_E-siliculosus-1a_M_contig91.17213.1|Name=mRNA_E-siliculosus-1a_M_contig91.17213.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:312163..312523+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTTCGGCATGCATGTACGGACCTCCTTGGTGTACTTCGTCTACTCAT
GTTTTGTGTCGTGCGTGTCCGTTGTTACTTTTGGGTCCCATTGTTTGCCT
GTCTCTCTTCGTTTCTGAATACAGGCGTAGCCTATGACCAAGCCAAGCGT
GGACTACATCATCATGTCGACGCCGCCTCGCGATTTGTTTTGCGCACGAA
TGAGGGCATGAACCTTCCATCTTTAATGCGTGTACTCTTGAAGTTTTCTT
ACGCTGGTAGGATGAGTAAAAGCCGTGTTGCTTGCGTACACAACAAGATG
CGTGCTGGTTGCAAGGTTTGTTTGCGCGAACGAGCGATAATGTTTCGGCA
TGCATGTACGGACCTCCTTGGTGTACTTCGTCTACTCATGTTTTGTGTCG
TGCGTGTCCGTTGTTACTTTTGGGTCCCATTGTTTGCCTGTCTCTCTTCG
TTTCTGAATACAGGCGTAGCCTATGACCAAGCCAAGCGTGGACTACATCA
TCATGTCGACGCCGCCTCGCGATTTGTTTTGCGCACGAATGAGGGCATGA
ACCTTCCATCTTTAATGCGTGTACTCTTGAAGTTTTCTTACGCTGGTAGG
ATGAGTAAAAGCCGTGTTGCTTGCGTACACAACAAGATGCGTGCTGGTTG
CAAGGTTTGTTTGCGCGAACGAGCGATA
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