mRNA_E-siliculosus-1a_M_contig91.17212.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17212.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17212.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:308385..310765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size162
Model size163
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936444.8142447-CDS-E-siliculosus-1a_M_contig91:308384..3084611622936444.8142447-CDS-E-siliculosus-1a_M_contig91:308384..308461Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 308385..308461 +
1696251081.7173502-CDS-E-siliculosus-1a_M_contig91:308384..3084611696251081.7173502-CDS-E-siliculosus-1a_M_contig91:308384..308461Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 308385..308461 +
1622936444.9455326-CDS-E-siliculosus-1a_M_contig91:310680..3107651622936444.9455326-CDS-E-siliculosus-1a_M_contig91:310680..310765Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 310681..310765 +
1696251081.7262251-CDS-E-siliculosus-1a_M_contig91:310680..3107651696251081.7262251-CDS-E-siliculosus-1a_M_contig91:310680..310765Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 310681..310765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17212.1prot_E-siliculosus-1a_M_contig91.17212.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 308385..310765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17212.1

>prot_E-siliculosus-1a_M_contig91.17212.1 ID=prot_E-siliculosus-1a_M_contig91.17212.1|Name=mRNA_E-siliculosus-1a_M_contig91.17212.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=54bp
LGNLAHEPQAALCIRDDCTRPLRWNGWVGKEQPEGNGARAEPYIRDLKGD
GTG*
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mRNA from alignment at E-siliculosus-1a_M_contig91:308385..310765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17212.1 ID=mRNA_E-siliculosus-1a_M_contig91.17212.1|Name=mRNA_E-siliculosus-1a_M_contig91.17212.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2381bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:308385..310765+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTAGGGAATCTCGCACATGAACCACAAGCAGCTCTGTGTATCCGAGATGA
TTGCACGCGACCTCTCCGATGGAACGGGTAAGAATAGCTAGGCTTATTAC
GTCGGTTGCGTTCTGTCGGATGAGGTTGATTTTCGTCCGAGAGACATTTT
CTTTCCCAAAAAGTTCAAACCACCATACAGCGCGTGTCCTCCATCTACTG
CTGCAGCTGCTGCTGCAGCCGCCCTTCGCGTAGAGAGTCTGTGGTGTGTG
TCGTGCTATTGTCTAGCTGGACAGTGACAGCAGTAGTAGTACGGCGGGTG
TGTGTGTGTGTTTTCTTTCTCTCTGATGTTGTTTGTCTTGAGGAGGAGGA
GGTGAGAGCGCATGCATGATGATGAGACTACAGTACTGCTGTCCTCTATG
ACCAAAGTAGAGGAGAGCGAGGGCTGCGTTAGATGTGCGTACACGACCTT
ATTATGGCGCTTTGTTCGGCGTGGTGTCGGTGTGCGTGCTTGTATCTACA
ACATTCGTGTGCTGCTGCTGCTGCTGCTGTGCTCTTCTGTTTTTCGGAGC
CTCTCTGGTTCTTTTTTTCTTTTTTGTTCCTGACGGCTGGGGTCCTACGA
GTCAAGCGGATGTAGCGCAGCCGCGTGCCCCCTCCCGCTCGCCCTTGCTG
CTCTGCTGATTGCTGACATTGCTGTCGAGCAGCGCGCGTTCGAGACCGCC
CGCCTTATACATGTCTGACGACGTTTCCCAAGCCGATCAACTGGCAAGTT
GGTGATGTGATCATAGCCTCCAAGAAGAGAAGCTCAGGCACAAAATGGCA
TTATTCGCGGCGGAGAAGTCTCATTTGCCTCGATTGCGATGAAGGAAGGC
AGTTTTGGAGCCGCCGGGGGCGCAAGGGCTGCTGTACAGGGTGAGAACCT
AGACAGCCTGGGGGAGGCCTGCTGCATACTACGTAGTTTGACACATATGC
TCGCCGCAGGCAGTCACGCGCACAGATAAAACACAGCGTAGATATCGCTC
ACGTATTTTCGAATACGGGGGATTTTTGAAGTGTTGCAAGAACAATCCAG
GAAAAAAGAGCTGGCTACTGGATACGGTTGTTTAGTCGTACCACGCGACT
GCTGTGTCTTGTGCCGTGTTGGCTACGGTTGAACGTTGCATGCTCTTGAA
CCATGGACATGGTTTACAGCAGTAATAGCAAAGCATTTCGAAAAGTCTCG
GGAAGGTGAACGCTCTCATTTCAACCAACTGCCAAGAGCGACTTTGTGGA
GGGCACATGCATATCATCATGTACCGTAAGTGACACAAGATACCACACGC
CCTTGACCGATTTTCAAAGCTCGATTGCTCCACAGTTGAAAGAGTGGTGG
CGCCGAAATAGCGGCGTCCCAGCCGTCTCGTCGAGATCTTTCCGACAACG
TATCGATTGAATTTGGCACCCACGTCTTTCGTGCAGTAGTCGATCGTTGA
AAATCGGTCCAGGGGGTGTGGTATCTTATGTCACCTACGGTACATCACGT
CAGCTAAGCGGTAGCACCACTTATAATGTGTTTACCGTAGGTGATACAAA
ACACCACACCCCCTGGACCGATTTTCAAAGCTCGATTGCTCCGCATCAAG
TAGAAAGAGTGCTGATGCCGAAAATGGCGGCGTTGGAATCGAAGCACGCT
ACAGCAGCGCATCACTGCTGCAACCCGTGTGCCCTCGTGGACTACGGTAC
CCCGTCTACCTTGATGTCTGAGAAGCCAATGGGATCAATCCTGGGAGATC
GGAAGACCTCGGGAAGATCGAATGGCAACTGTTGAGAGAGGTTTCAGAGG
TTCCATGTTGAAAGGGTGAAACTGCTGTCCATCACAGACAGTGGGATGCC
GAGGCGCGCAGCCTGTTGTCGGTTGAGTATTTGTAGTGTTCGCAAGCCTG
TTGCTTGACCTCGGCGTTGTTTTTTTCCTTCATCTCTCAATTTCTCTAAC
GCGCGCGGAACTATTGATTTCGCTGGAGCTCCAGCGGGCATATCCAGACA
CGACGGAGGGGGCTTGTCCAGAAATCGACGCGACGAATGAATGTCAACCA
AACTGCTGTACAATTCCGTTGCCTGTTGGAACTTGCGTCAACTGTTGCAT
CCAATTTCAGCGGAGCATGTCCTTCACGGGGACTGCGCAAGACGACATTT
ATTGGGGGAAGGAGACATTCGCTTGCTTCTTGTGCCCGATGCTGATCGGT
CACGAGGCCCCCGATTGCGTATGCTCGACCAGAAGGGAGGAGGCAAGTCC
TTGACGGAAAGTCCGGTGTCGTCTACCCCCACGGTGACGGCAGCAGGTGG
GTCGGCAAAGAGCAGCCGGAGGGCAATGGCGCAAGAGCTGAGCCGTACAT
TCGCGACTTGAAGGGAGACGGGACGGGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:308385..310765+

>mRNA_E-siliculosus-1a_M_contig91.17212.1 ID=mRNA_E-siliculosus-1a_M_contig91.17212.1|Name=mRNA_E-siliculosus-1a_M_contig91.17212.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=324bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:308385..310765+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTAGGGAATCTCGCACATGAACCACAAGCAGCTCTGTGTATCCGAGATGA
TTGCACGCGACCTCTCCGATGGAACGGCTAGGGAATCTCGCACATGAACC
ACAAGCAGCTCTGTGTATCCGAGATGATTGCACGCGACCTCTCCGATGGA
ACGGGTGGGTCGGCAAAGAGCAGCCGGAGGGCAATGGCGCAAGAGCTGAG
CCGTACATTCGCGACTTGAAGGGAGACGGGACGGGTTAAGTGGGTCGGCA
AAGAGCAGCCGGAGGGCAATGGCGCAAGAGCTGAGCCGTACATTCGCGAC
TTGAAGGGAGACGGGACGGGTTAA
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