mRNA_E-siliculosus-1a_M_contig91.17210.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17210.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17210.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A6H5KI89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI89_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 9.190e-101
Identity = 194/211 (91.94%), Postives = 199/211 (94.31%), Query Frame = 2 
Query:   53 MHRLGHALLIGLASSRLASCFIRGPALQHRWFSDLATNCNDVRTAAACVCAERVGCPQLLLGTAHTSRVRVKQVAHVVSGEQAFNDNSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXTAETLADGATMGQDKTLMAGIELGLDVLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAM 685
            MHR+GHALLIGLAS RLASCFIRGPALQHRWFSDLATNCNDV T AACV AERVGCP LLLG AHTSRVRVKQVAH+VS EQAFND+S GXXXXXXXXXXXXXXXXXXXXXXXXXXX AETLADGATMG+DKTL AGIELGLDVLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKK INQVRP+GAQLSD GMPSSHAM
Sbjct:    1 MHRIGHALLIGLASLRLASCFIRGPALQHRWFSDLATNCNDVNTPAACVSAERVGCPLLLLGIAHTSRVRVKQVAHIVSREQAFNDSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETLADGATMGRDKTLPAGIELGLDVLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKNINQVRPEGAQLSDPGMPSSHAM 211
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: D7FNW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW3_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 6.000e-79
Identity = 137/175 (78.29%), Postives = 139/175 (79.43%), Query Frame = 2 
Query:  434 MGQDKTLMAGIELGLDVLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGLQEHGVLLLHPSLPPWPLGVTQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGV 958
            MG+DKTL+AGIELGLDVLGSSTQW VAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSD GMPSSHAM                                  TQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGV
Sbjct:    1 MGRDKTLLAGIELGLDVLGSSTQWAVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDPGMPSSHAM----------------------------------TQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGV 141
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A6U4CT78_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CT78_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.400e-32
Identity = 79/205 (38.54%), Postives = 114/205 (55.61%), Query Frame = 2 
Query:  485 LGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGL------QEHGVLLLHPSLPPWPLGVTQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGVETVFGGPNIPVELAFAVCFVTFLTFGNAQRKISQVLARRKD 1081
            +G ST+W V+G V  AL+ R DV  L +V+GS++NA+ SK+LK+ +NQ RPD A  +D GMPSSHA SLF++G Y +  +      +     L  P+     L +     +L  Y    ++WRV  G+HTLPQVAVGA VG+  A+ WY  C P +    +      F    +P     A+     LT G    K++++LA+RKD
Sbjct:   35 IGRSTKWTVSGGVAAALVLRRDVPALAFVVGSVLNALSSKLLKRLLNQKRPDTATQTDPGMPSSHAQSLFFIGGYAMRAVAATPAPEALAAALGLPAKAGPGLQLALNPVILA-YISYCAVWRVAVGYHTLPQVAVGAVVGSAAALGWYAACRPLVHDFLK-----AFVPEPLPFFAVAAIGVGGVLTVGKVGEKLNRLLAKRKD 233
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A7S2WS98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS98_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.140e-30
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:  485 LGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGLQEHGVLLLHPSLPPWPLGVTQ-TQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYL 934
            +GSS + +V  AV VAL+ R D   L +VLG+L+NAV +KVLK+ INQ RP+GA+  D GMPSSHA SLF+L ++L    Q    L   P LP +  G +     LL  YA  AS WRV AG+HT PQV VG  VG++  +LW+  C  ++
Sbjct:   45 IGSSARILVGSAVAVALLVRRDAAALGWVLGALLNAVLAKVLKRLINQSRPEGARSDDPGMPSSHAQSLFFLASFLAAAAQFWEPLP-SPLLPTYTAGHSAGIAVLLLAYAWLASAWRVGAGYHTAPQVLVGGVVGSLTGMLWFFACRSHI 194
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A0G4EJI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJI9_VITBC)

HSP 1 Score: 130 bits (326), Expect = 3.700e-30
Identity = 77/196 (39.29%), Postives = 108/196 (55.10%), Query Frame = 2 
Query:  488 GSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGLQEHGVLLLHPSLPPW-PLGVTQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGVETVFGGPNIPVELAFAVCFVTFLTFGNAQRKISQVLAR 1072
            G S +++V+G V +AL+ R D    V+V+GSL+NAV  KVLK+  N  RPD A +SD GMPSSHAMSL +L   L+  + +         LP W  L       L+  YAL +++WRV+A  HT  QVAVG AVG    ++WY L    +          + G P +P      +C +  LT G+ +RKI ++L R
Sbjct:  134 GLSARFLVSGLVFLALVMRRDAAVTVWVIGSLLNAVLGKVLKRLFNHSRPDEATVSDPGMPSSHAMSLSFLSVSLIRAIIDAD------RLPAWWRLDKRWAVVLVSSYALLSAVWRVRANLHTSEQVAVGGAVGGTVGLVWYQLGKNGINKWMERQFVLMTGKPLLPWGWLVGICLLGSLTVGSVERKIHKLLVR 323
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A4D9CV92_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV92_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.100e-29
Identity = 71/180 (39.44%), Postives = 99/180 (55.00%), Query Frame = 2 
Query:  533 LITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGL-QEHGVLLLHPSLPPW-PLGVTQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGVETVFGGPNIPVELAFAVCFVTFLTFGNAQRKISQVL 1066
            L+ R D   + + +G+++NA+  K+LK+ I + RPDGA L D GMPSSHAM+LFY+  +L   L Q+ G+      LPPW PL V  T  L G+Y   AS WRV +G HT  Q+ +GA VG    + W   C      Q    +    GG  +PV     V  V  LT G+ +RKI++ +
Sbjct:    2 LLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGI----GMLPPWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILIGAGVGGGVGLAWERECAMVCDHQVGAFLARYKGG-QVPVVYLVGVMVVGALTVGSVERKIAKAM 176
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: K8Z811_NANGC (Dolichyldiphosphatase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z811_NANGC)

HSP 1 Score: 124 bits (310), Expect = 1.460e-28
Identity = 67/145 (46.21%), Postives = 89/145 (61.38%), Query Frame = 2 
Query:  482 VLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGL-QEHGVLLLHPSLPPW-PLGVTQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLW 910
            +LG ST+W VA  V V L+ R D   + + +G+++NA+  K+LK+ I + RPDGA L D GMPSSHAM+LFY+  +L   L Q+ G+      LPPW PL V  T  L G+Y   AS WRV +G HT  Q+ VGA VG    + W
Sbjct:  129 LLGKSTRWTVASLVAVMLLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGI----GVLPPWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILVGAGVGGGVGLAW 269
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A7S1XLD3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLD3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.540e-28
Identity = 75/197 (38.07%), Postives = 108/197 (54.82%), Query Frame = 2 
Query:  509 VAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGL------QEHGVLLLHPSLPPWPLGVTQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGVETVFGGPNIPVELAFAVCFVTFLTFGNAQRKISQVLARRKD 1081
            V+G V  AL+ R DV  L +V+GS++NA+ SK+LK+ +NQ RPD A  +D GMPSSHA SLF++G Y +  +      +     L  P+     L +     +L  Y    ++WRV  G+HTLPQVAVGA VG+  A+ WY  C P +    +      F    +P     A+     LT G    K++++LA+RKD
Sbjct:   70 VSGGVAAALVLRRDVPALAFVVGSVLNALSSKLLKRLLNQKRPDTATQTDPGMPSSHAQSLFFIGGYAMRAVAATPAPEALAAALGLPAKAGPGLQLALNPVILA-YISYCAVWRVAVGYHTLPQVAVGAVVGSAAALGWYAACRPLVHDFLK-----AFVPEPLPFFAVAAIGVGGVLTVGKVGEKLNRLLAKRKD 260
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: L1JU71_GUITC (acidPPc domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JU71_GUITC)

HSP 1 Score: 112 bits (279), Expect = 7.850e-25
Identity = 68/204 (33.33%), Postives = 108/204 (52.94%), Query Frame = 2 
Query:  485 LGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGLQEHGVLLLHPSLPPWPLGV-TQTQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGVETVFGGPNIPVELAFAVC---FVTFLTFGNAQRKISQVLARRKDD 1084
            +  +T+W+V+      LI R D  T+  + G+L NA   K+LK+ + + RPDGA +SD GMPSSHAMSLF+L  YL   +              WP+   T   + L +++  ++ WRV+AGFHT  Q+ VG+ +G  + + W++  H  + +  RL V            L +A+C    V  L  G+ +RKIS+ L  + ++
Sbjct:   25 IAKNTRWLVSLTAAAFLIWRRDAVTIAAIGGALGNAALGKLLKRLLAEKRPDGAPVSDPGMPSSHAMSLFFLSLYLSAAINVW---------TDWPMAARTIVTSSLLIFSTYSAAWRVRAGFHTPAQILVGSVLGGFNGMAWFYFNHQNMAALQRLDVFLKESS-----ALPWALCGSLIVGALLVGSVERKISKFLKSKSEN 214
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Match: A0A7S0GRV2_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GRV2_MICPS)

HSP 1 Score: 111 bits (277), Expect = 4.470e-24
Identity = 71/201 (35.32%), Postives = 105/201 (52.24%), Query Frame = 2 
Query:  476 LDVLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDAGMPSSHAMSLFYLGTYLVIGLQEHGVL----LLHPSLPPWPLGVTQTQTLLGMYALTAS----LW-RVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARLGVETVFGGPNIPVELAFAVCFVTFLTFGNAQRK 1051
            L  +  ST+++V+GA    L+T+ +V  +  ++GS++N+   KVLKK +N+ RPDGA  +D GMPSSHA+SL YL  Y    L   G +    +   +L PWP  V+ T  + G  +L +      W RVK G+HT PQV VG  +GA  A++W  +    ++  A      VF        + +  CFVT   F     K
Sbjct:   55 LSYINESTKFLVSGAALATLLTKPEVAVVWCLIGSVVNSACGKVLKKLLNEKRPDGAAKADPGMPSSHALSLSYLSVYAASALASRGGVDGGAIFASALQPWP--VSATFVIPGCVSLISLGVFFTWLRVKLGYHTKPQVVVGYVLGAATAMVWLAIGEQVVVPAATHDKNVVF--------VLYGACFVTSALFAKVAVK 245
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI89_9PHAE9.190e-10191.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW3_ECTSI6.000e-7978.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4CT78_9STRA4.400e-3238.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WS98_9STRA1.140e-3047.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A0G4EJI9_VITBC3.700e-3039.29Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9CV92_9STRA5.100e-2939.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8Z811_NANGC1.460e-2846.21Dolichyldiphosphatase (Fragment) n=1 Tax=Nannochlo... [more]
A0A7S1XLD3_9STRA5.540e-2838.07Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1JU71_GUITC7.850e-2533.33acidPPc domain-containing protein n=1 Tax=Guillard... [more]
A0A7S0GRV2_MICPS4.470e-2435.32Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:288396..291680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1035
Model size1470
Exons6
Ec32 orthologEc-12_003140.1
Ec32 ortholog descriptionPhosphatidic acid phosphatase type 2/haloperoxidase
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko01000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EC2.1.1.320,3.6.1.43
EggNOG OGsCOG0671@1,KOG3146@2759
EggNOG free text desc.dolichyldiphosphatase activity
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006629,GO:0006638,GO:0006639,GO:0006651,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008195,GO:0008610,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046339,GO:0046460,GO:0046463,GO:0046486,GO:0047874,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
KEGG Pathwayko00510,map00510
KEGG ReactionR01004,R11216,R11218,R11220
KEGG koko:K07252,ko:K19737
KEGG rclassRC00002,RC00003,RC02120,RC03389,RC03391
Seed eggNOG ortholog2880.D7FNW3
Seed ortholog evalue3.3e-64
Seed ortholog score252.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17210.1prot_E-siliculosus-1a_M_contig91.17210.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 288448..291297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936444.1384447-UTR-E-siliculosus-1a_M_contig91:288395..2884471622936444.1384447-UTR-E-siliculosus-1a_M_contig91:288395..288447Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 288396..288447 +
1696251081.5192456-UTR-E-siliculosus-1a_M_contig91:288395..2884471696251081.5192456-UTR-E-siliculosus-1a_M_contig91:288395..288447Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 288396..288447 +
1622936444.300371-UTR-E-siliculosus-1a_M_contig91:291297..2916801622936444.300371-UTR-E-siliculosus-1a_M_contig91:291297..291680Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 291298..291680 +
1696251081.6106203-UTR-E-siliculosus-1a_M_contig91:291297..2916801696251081.6106203-UTR-E-siliculosus-1a_M_contig91:291297..291680Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 291298..291680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936444.1994388-CDS-E-siliculosus-1a_M_contig91:288447..2886661622936444.1994388-CDS-E-siliculosus-1a_M_contig91:288447..288666Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 288448..288666 +
1696251081.5408955-CDS-E-siliculosus-1a_M_contig91:288447..2886661696251081.5408955-CDS-E-siliculosus-1a_M_contig91:288447..288666Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 288448..288666 +
1622936444.2151773-CDS-E-siliculosus-1a_M_contig91:289209..2895661622936444.2151773-CDS-E-siliculosus-1a_M_contig91:289209..289566Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 289210..289566 +
1696251081.554434-CDS-E-siliculosus-1a_M_contig91:289209..2895661696251081.554434-CDS-E-siliculosus-1a_M_contig91:289209..289566Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 289210..289566 +
1622936444.2281842-CDS-E-siliculosus-1a_M_contig91:289741..2897981622936444.2281842-CDS-E-siliculosus-1a_M_contig91:289741..289798Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 289742..289798 +
1696251081.5654438-CDS-E-siliculosus-1a_M_contig91:289741..2897981696251081.5654438-CDS-E-siliculosus-1a_M_contig91:289741..289798Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 289742..289798 +
1622936444.246705-CDS-E-siliculosus-1a_M_contig91:290264..2904041622936444.246705-CDS-E-siliculosus-1a_M_contig91:290264..290404Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 290265..290404 +
1696251081.575042-CDS-E-siliculosus-1a_M_contig91:290264..2904041696251081.575042-CDS-E-siliculosus-1a_M_contig91:290264..290404Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 290265..290404 +
1622936444.2629232-CDS-E-siliculosus-1a_M_contig91:290803..2909331622936444.2629232-CDS-E-siliculosus-1a_M_contig91:290803..290933Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 290804..290933 +
1696251081.5843835-CDS-E-siliculosus-1a_M_contig91:290803..2909331696251081.5843835-CDS-E-siliculosus-1a_M_contig91:290803..290933Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 290804..290933 +
1622936444.281663-CDS-E-siliculosus-1a_M_contig91:291165..2912971622936444.281663-CDS-E-siliculosus-1a_M_contig91:291165..291297Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 291166..291297 +
1696251081.5985143-CDS-E-siliculosus-1a_M_contig91:291165..2912971696251081.5985143-CDS-E-siliculosus-1a_M_contig91:291165..291297Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 291166..291297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17210.1

>prot_E-siliculosus-1a_M_contig91.17210.1 ID=prot_E-siliculosus-1a_M_contig91.17210.1|Name=mRNA_E-siliculosus-1a_M_contig91.17210.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=345bp
MHRLGHALLIGLASSRLASCFIRGPALQHRWFSDLATNCNDVRTAAACVC
AERVGCPQLLLGTAHTSRVRVKQVAHVVSGEQAFNDNSGGSGSSSGSSSS
PEVDSSEAAAAAAAAAATAETLADGATMGQDKTLMAGIELGLDVLGSSTQ
WVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQL
SDAGMPSSHAMSLFYLGTYLVIGLQEHGVLLLHPSLPPWPLGVTQTQTLL
GMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARL
GVETVFGGPNIPVELAFAVCFVTFLTFGNAQRKISQVLARRKDD*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig91:288396..291680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17210.1 ID=mRNA_E-siliculosus-1a_M_contig91.17210.1|Name=mRNA_E-siliculosus-1a_M_contig91.17210.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3285bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:288396..291680+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CATCGTTGTGTGTTGCAAGTGTGTGTCAGCGTGCGTGCTGCCGCTGCTTC
CCATGCACCGCTTAGGGCACGCTTTGCTCATCGGGCTAGCGAGTTCGCGG
CTGGCTAGCTGCTTCATACGAGGTCCTGCCCTTCAGCACAGGTGGTTCAG
CGATCTCGCTACAAACTGCAACGACGTACGCACAGCGGCTGCTTGCGTGT
GTGCCGAGCGAGTTGGTTGCCCACAATTGCTGCTGGGTACAGCACACACA
TCACGAGTCAGAGTGAAACAGGTGGGTGGTGTAGCCGGGGTAGTTGCCGC
GCTTTGAGCTTGTCCGGTTGGTGCATTGTTGTCAGTGCTACCAGGCTGGA
CAATTTTTACATCCAGCACGCTCGTCCTCTGCATCTACGAAAGCTACGAT
CATGAGGGCCGTTTTGGTGTGATCACCCCGTTGTGGACCTGCTGTATCAT
GTGCATCGTAGGGTATTTGAAACGAAGTGGCGCGCTGCTATTTAGCAGAG
AGTTTATATGAACTAAATGCTCCTATTCCGTGGGCTCCGCCACAAAGCAG
TGGCAGCGATACCGATATACGTTGGGTTCCAAAAGACGAGAGTGCCGGAC
TCCACAATTTCTGATCCAGATGACCAGCGCAGCGCCGCAAGCTGTCGGCA
CGCTAAACCAAAGCTACCCTAGAGATCTTTACGCTCTGTAACCCAACGGT
ACTTGTCGCACCAAACAATGCGGCACACCTGTTAAACCACGGTCTTGGTC
GATTGCGGGCAGCAGCCCCTATGCTGACTATGACAGCGATGTGATGCTTG
TGCGCTCACAGCAGGTTGCACACGTTGTTTCGGGAGAACAGGCCTTCAAC
GACAACAGCGGCGGTAGCGGCAGCAGTAGCGGTAGCAGTAGCAGCCCTGA
GGTGGACTCATCGGAGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAACAG
CTGAAACCCTAGCCGACGGCGCCACAATGGGACAGGACAAGACCCTAATG
GCCGGAATAGAGCTCGGGTTGGATGTGCTGGGCAGCAGCACGCAGTGGGT
CGTGGCTGGTGCGGTGGGCGTCGCGCTGATAACGAGGGCCGACGTTGATA
CACTGGTGTATGTGTTGGGGTCCCTCATCAATGCGGTGTTCTCCAAAGTT
TTGAAGAAGACCATCAATCAGGTATGAGTTCGGTGATACGGACGCGTTTG
CCCGATCGGGTGTCAGCCTCGTGATTAAGTCGCTGCTACTCTCTCAGCTC
CTCAAGAGGCTCATCTTCATGCTGGTGGACGGCCGACAGCAATACTGGCT
AATGACTTTCCATCGGGAACTAACCTATTGTCAGTGCTCGTGACAGGTGC
GCCCGGACGGGGCCCAGCTTTCAGACGCAGGGATGCCGAGCTCGCACGCC
ATGGTGAGTTGTTCTGAGCAGCCGCATAGAGGCGAGCAAGGAAACATATC
CTGCTGGTGCACGGACGTCTGTCAGTGGACACCACGTTGTCTGCCTTTGG
GCGACCCTGAAGCTCAAAGGACCAGGTCTTGCTGTCCTCCTTCCTTGTTT
GGTACCTTGTGTTGCTTGGTCGCCCGTCGGAAATCGTCCCGTGAAAGGCG
GATGCGGGGTCTGGAGTGGGGGGCAAAACTCTTCCGAGCGGTGTATCGTT
GAACATTCCCCCACATTCCACTCTTGATTCTGGGTCACGAGGCCAAGAAG
GTTTGAAGCTTCATATCGAGAACCCCTCGTGAAAGGACGGTGTATCCACC
CACAACAGCTGACCCGCCCGCGCCCCCCCCCCCACGCGCCGCAATTGCCG
TCACCGCTGCCTCGCTACCGTGAACCTCCGTTTTTCGCTCGTTTCGTGGG
CTCGCTCGACCGCCGTCAGTCATTGTTTTACCTGGGAACGTACCTCGTGA
TTGGTCTTCAGGAGCACGGGGTGTTGTTGCTGCACCCGTCTTTGCCGCCA
TGGCCTCTCGGTGTCACGCAGACGCAGACGCTACTTGGCATGTACGCCTT
GACGGCCAGGTAGGGGAAGGGCAGCAGCAACGGCGCATGCTAGAGGGGGC
TTCTCGGGTATGCACTGATCAAATGCACACGTGGTGATCCAGTTACTGCA
TGGGTGTCACACTACATTGTACCAGCTTCCATCTTTCCACGTGCGGAAAC
CGATCGAGGGCAATGACATCGTTTGCAGGTGGATCGCGAAGTTTTATTCC
CGATCAACCCCCGCCCCTTCCCTGTTCCCTTGCTCCTCCATCGTCTTTTG
CCTAGTATTTCGCACACACGATACACGTGTTTCCTTCTCTCCCTCGCTTG
CCCTCGCTAGAAATTTTCCAAGTGTAGCCCCCAAAGCTTTCGGGTTCTTC
CTGACTTTTGTCCTGTGGGCGTTGTTACCGTTGACACTTCCTCTGTCTTG
AATTTCAGTCTTTGGAGGGTCAAAGCGGGGTTCCATACTCTTCCGCAGGT
TGCCGTCGGAGCTGCGGTGGGAGCAGTGGACGCGGTACTTTGGTACCACC
TCTGTCATCCTTATTTATTATCGCAGGCAAGACTGGGTGTCGTACGTATG
TGCTGTAGAAGCTGCTGACGACGGGGGCGAGGAGTAGGGGGCACTACAGT
GAAGTTCAACTGGTTATTATGCTGTGAACGACAGCTTGGGATATCAAACA
GCAAGGTACAGGGTGAGGTGAGAGTGATCGCTGGGTGTGTCGCTCTCACT
CACGCGAAAAGAGTAAATATTTGTTCCCTGACGAATCATCCCCCGCCGGT
GTTACTTTCTTCGATTACAGGTGGAGACTGTCTTTGGAGGACCCAATATT
CCGGTGGAGCTGGCGTTCGCTGTGTGCTTTGTTACCTTTTTGACGTTTGG
AAACGCGCAACGAAAGATCTCCCAGGTTCTGGCGAGAAGGAAAGACGACT
AGTCAGCATACGTCTCAATTGATTCTGATCTACAAGTATGTCGGTGCATT
ATCTTCTACTTTTCTTGACGAGCATCGTGCCCAGCTCGTTCATGCCTAAC
TTTTTGTAAATTCCAGATGGTGCCTTCGCTTGAACGCATGACATTTGTCT
GCTCCTCCCCGCGATCGTTGTTCACAAGGGCTGGGGGCGCTTACGAAATG
TTTTACCGTCGTTTGACATGCCAGCACCATCGATTAGCATTGAGCTGTTG
TGACGGCTCGGTGAGCCACGATTTCAGTGTCAACCCCCTTGTTTAGGGAG
CTCTCGACACAGCAGTACACATGCAGCAAGTCGCCGGCTGGCCTTGGATA
CCGCCAGCCGGCCGCCCTCGAACCAGGGTGGCAAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:288396..291680+

>mRNA_E-siliculosus-1a_M_contig91.17210.1 ID=mRNA_E-siliculosus-1a_M_contig91.17210.1|Name=mRNA_E-siliculosus-1a_M_contig91.17210.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2070bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:288396..291680+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCACCGCTTAGGGCACGCTTTGCTCATCGGGCTAGCGAGTTCGCGGCT
GGCTAGCTGCTTCATACGAGGTCCTGCCCTTCAGCACAGGTGGTTCAGCG
ATCTCGCTACAAACTGCAACGACGTACGCACAGCGGCTGCTTGCGTGTGT
GCCGAGCGAGTTGGTTGCCCACAATTGCTGCTGGGTACAGCACACACATC
ACGAGTCAGAGTGAAACAGATGCACCGCTTAGGGCACGCTTTGCTCATCG
GGCTAGCGAGTTCGCGGCTGGCTAGCTGCTTCATACGAGGTCCTGCCCTT
CAGCACAGGTGGTTCAGCGATCTCGCTACAAACTGCAACGACGTACGCAC
AGCGGCTGCTTGCGTGTGTGCCGAGCGAGTTGGTTGCCCACAATTGCTGC
TGGGTACAGCACACACATCACGAGTCAGAGTGAAACAGGTTGCACACGTT
GTTTCGGGAGAACAGGCCTTCAACGACAACAGCGGCGGTAGCGGCAGCAG
TAGCGGTAGCAGTAGCAGCCCTGAGGTGGACTCATCGGAGGCGGCGGCGG
CAGCAGCAGCAGCAGCAGCAACAGCTGAAACCCTAGCCGACGGCGCCACA
ATGGGACAGGACAAGACCCTAATGGCCGGAATAGAGCTCGGGTTGGATGT
GCTGGGCAGCAGCACGCAGTGGGTCGTGGCTGGTGCGGTGGGCGTCGCGC
TGATAACGAGGGCCGACGTTGATACACTGGTGTATGTGTTGGGGTCCCTC
ATCAATGCGGTGTTCTCCAAAGTTTTGAAGAAGACCATCAATCAGGTTGC
ACACGTTGTTTCGGGAGAACAGGCCTTCAACGACAACAGCGGCGGTAGCG
GCAGCAGTAGCGGTAGCAGTAGCAGCCCTGAGGTGGACTCATCGGAGGCG
GCGGCGGCAGCAGCAGCAGCAGCAGCAACAGCTGAAACCCTAGCCGACGG
CGCCACAATGGGACAGGACAAGACCCTAATGGCCGGAATAGAGCTCGGGT
TGGATGTGCTGGGCAGCAGCACGCAGTGGGTCGTGGCTGGTGCGGTGGGC
GTCGCGCTGATAACGAGGGCCGACGTTGATACACTGGTGTATGTGTTGGG
GTCCCTCATCAATGCGGTGTTCTCCAAAGTTTTGAAGAAGACCATCAATC
AGGTGCGCCCGGACGGGGCCCAGCTTTCAGACGCAGGGATGCCGAGCTCG
CACGCCATGGTGCGCCCGGACGGGGCCCAGCTTTCAGACGCAGGGATGCC
GAGCTCGCACGCCATGTCATTGTTTTACCTGGGAACGTACCTCGTGATTG
GTCTTCAGGAGCACGGGGTGTTGTTGCTGCACCCGTCTTTGCCGCCATGG
CCTCTCGGTGTCACGCAGACGCAGACGCTACTTGGCATGTACGCCTTGAC
GGCCAGTCATTGTTTTACCTGGGAACGTACCTCGTGATTGGTCTTCAGGA
GCACGGGGTGTTGTTGCTGCACCCGTCTTTGCCGCCATGGCCTCTCGGTG
TCACGCAGACGCAGACGCTACTTGGCATGTACGCCTTGACGGCCAGTCTT
TGGAGGGTCAAAGCGGGGTTCCATACTCTTCCGCAGGTTGCCGTCGGAGC
TGCGGTGGGAGCAGTGGACGCGGTACTTTGGTACCACCTCTGTCATCCTT
ATTTATTATCGCAGGCAAGACTGGGTTCTTTGGAGGGTCAAAGCGGGGTT
CCATACTCTTCCGCAGGTTGCCGTCGGAGCTGCGGTGGGAGCAGTGGACG
CGGTACTTTGGTACCACCTCTGTCATCCTTATTTATTATCGCAGGCAAGA
CTGGGTGTGGAGACTGTCTTTGGAGGACCCAATATTCCGGTGGAGCTGGC
GTTCGCTGTGTGCTTTGTTACCTTTTTGACGTTTGGAAACGCGCAACGAA
AGATCTCCCAGGTTCTGGCGAGAAGGAAAGACGACTAGGTGGAGACTGTC
TTTGGAGGACCCAATATTCCGGTGGAGCTGGCGTTCGCTGTGTGCTTTGT
TACCTTTTTGACGTTTGGAAACGCGCAACGAAAGATCTCCCAGGTTCTGG
CGAGAAGGAAAGACGACTAG
back to top