mRNA_E-siliculosus-1a_M_contig91.17209.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17209.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17209.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A6H5KG63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG63_9PHAE)

HSP 1 Score: 505 bits (1300), Expect = 3.250e-170
Identity = 265/288 (92.01%), Postives = 275/288 (95.49%), Query Frame = 1 
Query:    1 MVLRPHSPVALVCGLLNVCAAFVPSNT-GGMGLTPIASSALDSAPCRPAAVSTTGSGGH---RRQMAVTMSSSVAPAPRTKAEKTSEHFKLKDGGMVEFGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAK 852
            MVLRPHSPVALVCGLLNVCAAFVPSNT GGMGLTPIA+SA    PCRPAAVSTT S GH   RR+MAVTM+SSVAPAPRTKAEKTSE FKLKDGG+VEFGSGQRVEA+ISGAPLESMQ YIS+PSRIVYACWEHKDITDMG+GVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEE VTKVRALSLKNTRLGGDVAVTIGGKMPGLLSA+PEPLVKSAALGINNKVLEYVSNTFVSTVAGDYR+WSRDQ+LAK
Sbjct:    1 MVLRPHSPVALVCGLLNVCAAFVPSNTAGGMGLTPIAASA----PCRPAAVSTTESAGHPDHRRRMAVTMASSVAPAPRTKAEKTSEQFKLKDGGIVEFGSGQRVEATISGAPLESMQAYISDPSRIVYACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYREWSRDQRLAK 284
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: D7FNW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW2_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 4.760e-137
Identity = 213/223 (95.52%), Postives = 217/223 (97.31%), Query Frame = 1 
Query:  184 MAVTMSSSVAPAPRTKAEKTSEHFKLKDGGMVEFGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAK 852
            MAVTM+SSVAPAPRTKAEKTSE FKLKDGGMVEFGSGQRVEASISGAPLESM EYISEPSRIVYACWEHKDI DMG+GVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEG+LRVEE VTKVRALSLKNTRL GDVAVTIGGKMPGLLSA+PEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKL K
Sbjct:    1 MAVTMASSVAPAPRTKAEKTSEQFKLKDGGMVEFGSGQRVEASISGAPLESMLEYISEPSRIVYACWEHKDIMDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGKLRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLVK 223
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: W7U0S3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0S3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.310e-21
Identity = 65/219 (29.68%), Postives = 117/219 (53.42%), Query Frame = 1 
Query:  226 TKAEKTSEHFKLKDGGMVEFGSGQRVEASISGAPLESMQEYISE-PSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTA------EDGT-------IQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEEMVTKVRALSLKN---TRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWS 831
            ++A    E F+L  G M EFG+   VE  +   P   ++ Y++E P R++ A W+ + +      VFR+  +  SF+ +S+  S+D++L         E+G        +  +S+G+S++ + ++LGQ F ++  +++ G+LR    V   R    K     RL G+V     G++P LLS +P P+++SAA+ IN +++ Y    FV  +A D+ +WS
Sbjct:   64 SEASSPKEFFRLARGKM-EFGTVDEVELLLWDEPA-LIRRYLTESPDRVLLATWDAELVDRRARDVFRLTTKPMSFVHLSLQPSIDVRLTAIPPEAGREEGAPESGGHLLSVESLGHSMNGLEQILGQRFAESLRIDVTGKLRAH--VPPARPGDSKGRGPVRLVGEVVFVTSGQLPSLLSLTPRPVLESAAIAINRRIMSYAKGKFVKNLAKDFNRWS 278
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A252DY18_9NOSO (Uncharacterized protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A252DY18_9NOSO)

HSP 1 Score: 89.4 bits (220), Expect = 1.440e-16
Identity = 55/185 (29.73%), Postives = 96/185 (51.89%), Query Frame = 1 
Query:  277 VEFGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKW 828
            + F + Q VE ++   P+  +Q Y+ +P R+V A  +   I  +   VFR+  R  SF+S+SI  +VD+++W   +GTI  +SVG       ++LG E+++  F L L+G L   +  T         TRL G   + +  ++P   S +P+P++++   G+   VL  V    +  +  DYR+W
Sbjct:    3 IRFTASQSVEIAVPKQPIP-IQHYLRQPQRLVNALVDTNRIQQLSEEVFRLKMRPLSFMSLSIQPTVDMRVWAESNGTINLQSVG------CEILGFEYINQRFALNLKGNLSPSQHST--------GTRLQGKADLEVQVELPPPFSFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRRW 172
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A1Z4IE66_9NOSO (Uncharacterized protein n=3 Tax=Nostocaceae TaxID=1162 RepID=A0A1Z4IE66_9NOSO)

HSP 1 Score: 87.4 bits (215), Expect = 6.670e-16
Identity = 57/203 (28.08%), Postives = 100/203 (49.26%), Query Frame = 1 
Query:  274 MVEFGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAK*AGQERAAL 879
            + +F + Q VE ++   P+  +Q Y+ +P R+V A  +HK I  +   +FR+  R  SF+S+SI  +VD+++W   +GTI  +SV        ++ G E+++  F L L G L   +  T         TRL G   + +   +P   S +P+P++++    +   VL  V    +  +  DYR+W   Q   +  GQ+   L
Sbjct:    2 LTKFTASQPVEIAVPDQPIP-IQHYLRQPQRLVNALVDHKRIQQLSEEIFRLKMRPLSFMSLSIQPTVDMRVWAESNGTIYLRSVA------CEIRGFEYINQRFSLNLRGYLSPYQSNT--------GTRLEGRADLEVQVDLPPPFSLTPKPILETTGNSLLKSVLLTVKQRLLHHLLADYRQWVISQTQEESLGQDDTQL 189
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A8J6ZWI5_9CYAN (DUF1997 domain-containing protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A8J6ZWI5_9CYAN)

HSP 1 Score: 87.0 bits (214), Expect = 9.070e-16
Identity = 54/185 (29.19%), Postives = 96/185 (51.89%), Query Frame = 1 
Query:  277 VEFGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKW 828
             +F + Q VE ++   P+  +Q Y+ +P R+V A  ++  I  +   VFR+  R  +F+S+SI  +VD+++W   +G I  +SVG       ++LG E+V+  F L L+G L  +++ T         TRL G   + +   +P   S +P+P++++   G+   VL  V    +  +  DYR W
Sbjct:    3 TKFTASQSVEIAVPQQPIP-IQHYLRQPPRLVRALVDNSRIQQLSEEVFRLKMRPMTFMSLSIQPTVDMRVWAESNGIIYLRSVG------CEILGLEYVNQRFALNLKGYLSAKDLST--------GTRLQGRADLEVQVDLPPPFSFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRHW 172
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A2A2TP43_9CYAN (Uncharacterized protein n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2TP43_9CYAN)

HSP 1 Score: 87.0 bits (214), Expect = 1.020e-15
Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 1 
Query:  283 FGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQ 840
            F + Q VE ++   P+  +Q Y+ +P R+VYA  E   I  +   VFR+  R  +F+SISI  +VD+++W    G I+ +S+        ++LG E+++  F L LEG L +EE       LS+ N +   D+ VTI   +P     +P+ ++++A  G+   VL  +    +  +  DY +W   Q
Sbjct:    5 FNALQSVEMTVPEQPIH-IQHYLRQPQRLVYALVETDRIKQLSEEVFRLKMRPLTFISISIQPTVDMRVWAEPSGVIRLQSIA------CEILGFEYINQRFSLNLEGYLSLEEN------LSVTNLKGRADLQVTID--LPAPFCFTPKAILETAGNGLLKSVLLTIKQRLLYQLLADYSRWVESQ 176
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: UPI0016845B08 (DUF1997 domain-containing protein n=1 Tax=unclassified Nostoc TaxID=2593658 RepID=UPI0016845B08)

HSP 1 Score: 86.7 bits (213), Expect = 1.230e-15
Identity = 55/187 (29.41%), Postives = 97/187 (51.87%), Query Frame = 1 
Query:  283 FGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQ 840
            F + Q V+ ++   P+  +Q Y+ +P R+V A  ++  I  +   VFR+  R  SF+S+SI  +VD+++WT  +GTI  +S+        ++LG E+++  F L L+G L   +        S   TRL G+  + +   +P  LS +P+P++++A   +   VL  V    +  +  DYR W   Q
Sbjct:    5 FTASQSVKIAVPHQPIP-IQHYLRQPQRLVNALVDNSRIQQLSEEVFRLKMRPLSFMSLSIQPTVDMRVWTESNGTIYVRSLA------CEILGVEYINQRFSLNLKGYLSPHQ--------SSSGTRLEGNADLEVQVDLPPPLSFTPKPILEAAGNSLLKSVLVTVKQRLLHHLLADYRHWVASQ 176
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A0D6KZH4_9CYAN (Uncharacterized protein n=6 Tax=Nostocales TaxID=1161 RepID=A0A0D6KZH4_9CYAN)

HSP 1 Score: 85.9 bits (211), Expect = 2.280e-15
Identity = 54/200 (27.00%), Postives = 102/200 (51.00%), Query Frame = 1 
Query:  283 FGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAK*AGQERAAL 879
            F + Q VE ++   P+  +Q Y+ +P R+V+A  ++  I  +   VFR+  R  +F+S+S+  +VD+++W   +GTI  +SVG       ++LG E+++  F L L+G L   ++ T         T L G   + +  ++P     +P+P++++   G+   VL  V    +  +  DYR+W   Q   +   ++ A L
Sbjct:    5 FTASQSVEIAVPKQPIP-IQHYLRQPQRLVHALVDNNRIQQLSEEVFRLKMRPLTFMSLSLQPTVDMRVWAESNGTICLRSVG------CEILGVEYINQRFALNLKGYLSPSQLST--------GTYLQGKADLEVQVELPPPFCFTPKPILETTGNGLLKSVLLTVKQRLLHQLLADYRRWVISQTNVQKLNEDSAEL 189
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Match: A0A1Z4K5Z5_9CYAN (Uncharacterized protein n=3 Tax=Calotrichaceae TaxID=2661849 RepID=A0A1Z4K5Z5_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 7.770e-15
Identity = 55/201 (27.36%), Postives = 103/201 (51.24%), Query Frame = 1 
Query:  277 VEFGSGQRVEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKW----SRDQKLAK*AGQ 864
             +F + Q VE  +   P+  +Q Y+ +P R+VYA  ++  I  +   VFR+  R  SF+S+SI  +VD+++W    GT+  +SVG       ++LG ++++  F L L+G L   +  T+        T L G   + +  ++P     +P+P++++   G+   VL  V    +  +  DYR+W    +++Q L+   G+
Sbjct:    3 TQFTASQSVEIVVPKQPIP-IQHYLRQPQRLVYALVDNNRIQQISEEVFRLKMRPLSFMSLSIQPTVDMRVWADSQGTLYLRSVG------CEILGVDYINQRFALNLKGYLSPLQHNTE--------TYLQGKADLAVQVELPPPFCFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRRWVSVQTKEQGLSDRTGE 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG63_9PHAE3.250e-17092.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW2_ECTSI4.760e-13795.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U0S3_9STRA5.310e-2129.68Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A252DY18_9NOSO1.440e-1629.73Uncharacterized protein n=4 Tax=Nostocales TaxID=1... [more]
A0A1Z4IE66_9NOSO6.670e-1628.08Uncharacterized protein n=3 Tax=Nostocaceae TaxID=... [more]
A0A8J6ZWI5_9CYAN9.070e-1629.19DUF1997 domain-containing protein n=4 Tax=Nostocal... [more]
A0A2A2TP43_9CYAN1.020e-1530.48Uncharacterized protein n=1 Tax=Calothrix elsteri ... [more]
UPI0016845B081.230e-1529.41DUF1997 domain-containing protein n=1 Tax=unclassi... [more]
A0A0D6KZH4_9CYAN2.280e-1527.00Uncharacterized protein n=6 Tax=Nostocales TaxID=1... [more]
A0A1Z4K5Z5_9CYAN7.770e-1527.36Uncharacterized protein n=3 Tax=Calotrichaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:282855..288192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size855
Model size2775
Exons4
Ec32 orthologEc-12_003150.1
Ec32 ortholog descriptionProtein of unknown function DUF1997
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelStigonemataceae
COG Functional cat.S
EggNOG OGs1G4ZU@1117,1JHS6@1189,28NJH@1,2ZBKN@2
EggNOG free text desc.Protein of unknown function (DUF1997)
Seed eggNOG ortholog1173024.KI912148_gene2823
Seed ortholog evalue4e-15
Seed ortholog score89.0
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17209.1prot_E-siliculosus-1a_M_contig91.17209.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 284775..288192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936444.0255718-UTR-E-siliculosus-1a_M_contig91:282854..2847741622936444.0255718-UTR-E-siliculosus-1a_M_contig91:282854..284774Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 282855..284774 -
1696251081.458315-UTR-E-siliculosus-1a_M_contig91:282854..2847741696251081.458315-UTR-E-siliculosus-1a_M_contig91:282854..284774Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 282855..284774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936444.048707-CDS-E-siliculosus-1a_M_contig91:284774..2849301622936444.048707-CDS-E-siliculosus-1a_M_contig91:284774..284930Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 284775..284930 -
1696251081.4697602-CDS-E-siliculosus-1a_M_contig91:284774..2849301696251081.4697602-CDS-E-siliculosus-1a_M_contig91:284774..284930Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 284775..284930 -
1622936444.0680919-CDS-E-siliculosus-1a_M_contig91:285726..2858581622936444.0680919-CDS-E-siliculosus-1a_M_contig91:285726..285858Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 285727..285858 -
1696251081.482291-CDS-E-siliculosus-1a_M_contig91:285726..2858581696251081.482291-CDS-E-siliculosus-1a_M_contig91:285726..285858Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 285727..285858 -
1622936444.0852654-CDS-E-siliculosus-1a_M_contig91:286569..2868301622936444.0852654-CDS-E-siliculosus-1a_M_contig91:286569..286830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 286570..286830 -
1696251081.4917407-CDS-E-siliculosus-1a_M_contig91:286569..2868301696251081.4917407-CDS-E-siliculosus-1a_M_contig91:286569..286830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 286570..286830 -
1622936444.098381-CDS-E-siliculosus-1a_M_contig91:287886..2881921622936444.098381-CDS-E-siliculosus-1a_M_contig91:287886..288192Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 287887..288192 -
1696251081.5019634-CDS-E-siliculosus-1a_M_contig91:287886..2881921696251081.5019634-CDS-E-siliculosus-1a_M_contig91:287886..288192Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 287887..288192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17209.1

>prot_E-siliculosus-1a_M_contig91.17209.1 ID=prot_E-siliculosus-1a_M_contig91.17209.1|Name=mRNA_E-siliculosus-1a_M_contig91.17209.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=285bp
MVLRPHSPVALVCGLLNVCAAFVPSNTGGMGLTPIASSALDSAPCRPAAV
STTGSGGHRRQMAVTMSSSVAPAPRTKAEKTSEHFKLKDGGMVEFGSGQR
VEASISGAPLESMQEYISEPSRIVYACWEHKDITDMGNGVFRMAFRGQSF
LSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELE
GELRVEEMVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSASPEPLVKSAA
LGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAK*
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mRNA from alignment at E-siliculosus-1a_M_contig91:282855..288192-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17209.1 ID=mRNA_E-siliculosus-1a_M_contig91.17209.1|Name=mRNA_E-siliculosus-1a_M_contig91.17209.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5338bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:282855..288192- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTTTTGAGACCACACTCCCCGGTAGCTCTGGTGTGTGGGCTGCTGAA
TGTGTGCGCTGCGTTCGTGCCCAGCAACACCGGCGGGATGGGGTTGACAC
CCATCGCTTCCTCAGCACTAGACTCAGCACCTTGCCGACCTGCTGCTGTG
TCTACAACCGGGTCGGGAGGCCACCGGCGCCAAATGGCGGTCACGATGTC
GAGCTCGGTGGCACCGGCTCCGAGGACGAAAGCGGAAAAAACAAGCGAGC
ATTTCAAGCTCAAGGACGGGGGCATGGTGGAGTTTGGGAGCGGTCAGCGC
GTTGAGGTGCGTGTCCGGACAGCAGCAGGACAGAGGGGAGTACATCACAT
GTGCTGCTGTAGCAAGGAGTCATGGTTAGGGGGCGGCGTTGGTTGTGAAC
GAACTACGGCGGTACTGCTACGTGTGTTTGCTGTTGCTGAACAGAGAGGA
AATATAGCAGAGACAGGGCTGGGGCGAAAATAACGTGTTGACGGGCGTAA
AAAAAAAACAGCGAACGCAGGAGGTGACTCATCGCCCGTCAGAGAGGAAA
TATTGAAGTCTAGGGTACGTACGTAGTCATCAGTACATAAGAGAGCAGCA
ACTTCTGAGTGCGCCCCTTCTCTCCGAACAGACACGCCTGACCCAGCGCA
GCAGCGAGACCCTGTTCTAAGGTTTGAAGCCTTACTACTTCATATTGCGT
GCACTCTGTTCATTCCATATATATCTGCGCCCAATGTACACACAACAGCA
GCCGAGCCTGCAAAATGTTGCGATAACGATGATGCGGGCTCACGACGTCA
CGTGTTCCCGCTCGGCAACGTGTATGTACGTGTGCGCCACGTACTTGCGG
GCTGCTTGTGTGTGATGCGTCGTATGTGACGCGTTCTTTGCTGTGAGAGA
AAACGGCTACCAGACTGTCTTGTAGAGCCTCTCACCCGTAGAGGGGATAT
CGCTGTGTGCTGCTCGGGAAACCGTAGAAATACAGGCAGTTCCGGCGACG
CTGTGAATATTCATTGCTACTTTTGGTCTTCGACGATGTATTCTGCAACA
TGCATGTATCGTAGAGATGGATTCGTTGCGTCATACATATTCAGAAGAAA
AAAACATTGAACGTTTCAGGAAAGAAGCCTTCTTTCGAATCTACCAGTAT
TAGTAACTGCAGGGGCCTTTGAATTTTGCAATCTCATCTCTCACGAGCCT
GCTCGAAGCTGCGTTTAAACCTAGATACTTGAGTAAGTGTCATTTTCGCT
GGTGGTGCGATTGTGTGAGTCCGGCGGTTAGCATGGCCGATGCTTATCAT
CGAAACCCGCATACGAAACGCTGCTTTGCTTGTTACATTTTCCCGTATTG
TTCGTGCACCAGGCTTCAATATCCGGTGCTCCTCTGGAGAGCATGCAGGA
GTACATTAGCGAACCCTCCCGCATTGTGTACGCGTGCTGGGAGCACAAGG
ATATCACGGACATGGGGAACGGCGTGTTTCGGATGGCCTTCCGGGGGCAG
AGCTTTCTGTCGATCTCGATCGATATGTCGGTAGATATCCAGCTGTGGAC
GGCGGAGGACGGCACGATCCAGTGCAAGTCGGTGGGCTACTCGGTCGACG
ACATGGCCAAGCTCTTGGGCCAGGTATTTCTAAATTTTTTTGTTTGTGTC
TTTGGAACAGCTCAGGACTTGACCTTTGTGTTGGCTGCAAGGACAGAAAT
GTTGACATGCCTCCGACTTGTCGCAGCAGATCTTGCCGTGGCAATCGGCT
TGTTTAGATAGCGAGAATTTTCACGCCGTTGACAACATACCCGCCTACAG
CGCAGTACAACGTAGAATCCTGGCAATATCATGTTCAAGGCCATGAGCTA
CCCGCGCAATGGCATGGAACTCTCTATATATATATATATATCAATGTATC
TGTATGTTTAGTTTGTTTTTCATCACCGGTACCATACGGCTAGCCGGTGG
AGAAGCGGCAGCCTTGCTTGTGTTCATTTGTGTCCTGCCAGGAATCCGCG
TGGATTTTGTGCTCATTGTTGCACAAGACGTTTCGCGATCGCAAGCAATG
AAAAGAATTGTAGTCGCTGTTGGGGGCTCAGTCCTTCACGCCGACCGTTG
CCACTGTAAATATTGCCGTCTTTTCTGGTGTGGCCTTTTCGTCGTGTGCT
ATTCAGACGGTTATTCAAGGTATCGTGAACGCTAGCCGCCACTCGACTGA
TAGTACTCATCGTATCCTAGGATGTGGATTCGATGAAAAGATGGGACGGC
CTGTGACGATAGATTATGGTGGTTGAACAAATCTATTCGGCTTTCTTTCA
CTACCTTGCATGCATCGGGGGTGCTGCTCGCCAGGAATTCGTGGACACGT
TCTTTTTGGAGCTGGAGGGGGAGCTGAGGGTGGAGGAGATGGTAACCAAG
GTCAGGGCGCTTTCCCTGAAGAACACGCGCTTGGGTGGCGACGTGGCAGT
CACAATAGGCGGCAAGGTACGAAGAAGAATGTTTGTCTCCTCTCTTTAGT
TGGTCCGGCTTGCGGCAGAGAATCGATCTAGTTCGCTGCACCAACTGTGT
TCACTGGTCGAGATAACTCCTCTAGCCGCTACGACATGGGTGAGGCCTCG
TGATTGATCGATGTCGTTTTTCGTTTGTTTGGGTCGCGGTTAGCACCCTC
CCTGACCTTTTTTTTGGCGTGGTTTGTTTCTGGCAAGCCTTGTTTATTTG
GTTATTCCCCCTCGAAATGGCCGGCAACAGTCATGGAGCACACGTTGGGG
AGGTTGAGTTCTCAGGTTCGGCAGCCTTGGAAACAAGCCTAGAATACCGC
GGTTGACGTTTGTATGACAGCACGTGGTTCACACAATGCGCGCACGCTGA
CGAGCACGGCGTAGGTTTCGTTCTTACAAGGAGCCGCTGGACAAAAGAAC
ATGTAGTTGATTGTTGCCCATGCCAACGCACAGGAGCCCTCCACGATATT
TCTGCGGCGGTTTTCAACATACAGTAGGAGGTCGTCAACAACGATTAGCG
CCGGTTGCCCTGTATGGGGCCAGTGAAATTACTGGGCACACACTGAATCA
CCAAGTCATTCTGTACATTGGAAACTGCCCCGGTCGATGTGCCGGACACG
CACCGGCGTTATGGATGGCCCCCCACTGTACACGGTCTCCAAATTTGGTT
ATGCAGCACATGTTGCACCCACTTCCTTGCGCTTTTGGAGGCGCGGCGGC
TAACGACCCCCCGTGCCCTTGCCCCTGTCCTTGCCTGTTTTTTTGCATGG
GACGCTACGTAGATGCCAGGCCTCTTGTCCGCGTCGCCGGAGCCTCTGGT
CAAGTCGGCCGCCTTGGGGATTAACAACAAGGTTCTCGAGTACGTGTCGA
ACACTTTCGTATCCACCGTCGCCGGCGACTACCGAAAATGGTCCAGGGAT
CAAAAGCTGGCGAAATAGGCTGGCCAAGAAAGAGCGGCGCTTCAGGAACG
AACGCCCCATGCTTAATATTGTGTGACACGTCATCTTCACGTTTCTTGCG
CCGCCCTTGTCGCCGATATTGATGTGCGACACTTACGGCTGCGACAGGTA
AACCTAGTGCAATTGTTTCAAACTCAGTTCCCAGGCAAAGATGGGCGCCG
CGGCACGACCCACAGTATGTGTGGAAACGGCACTTGCTTTTACATTGCTA
AATGTTTTATTTTCTTGGGAAACCTTGGATATCCTTCGCCTTTTTCTGAG
GTGTAGCGTTGTCCCCTGGGAGCGTGGGTAGAGTTGGAACAAGTGATTAG
TGGAAGAGGATGGATGTACTCCTCCTCCTCCCCCGCCTGCATTTTGTTTT
ATGCGCTGAAGGTGTTCCTCGCCCCCTTTGCCTCTCGGCGGTCTAGCCTT
GACACGTGAAGAGACCTTGTTCACGGACTTATTCAAAGGAGGTCTTACAG
TCTTGGCAACAAGAGATTCGTCGTGGGGTTAATGTTCGAAACCATCGCGC
ACGATTTTTTCTTCAATGTACCCGGATTTGGGAAAAGGATATTCTCCAAG
AAACGTTCGGCTTTCTTAAATGGACATGGTGGTGCGATAGACGATAGGTG
ATCTAGACATGAGACTAGGGGACGTTTCGCCGTGTCAGACTCTCGGGCGG
TTGTGTTGTACCGGTTTCTGGATGGGGTGCGTGTCAGATAGTGAGGCATT
GAACTGCAGCAAGCCCAACCTCATGGATATTCCGGTGTGATCCGTGAATA
TTTATGGGCAAGGAATAACGCCAAAGTTTGAGGTATCGGGTGTGACATGC
GCTCGAACTGGCCCCCGTTGGCGACTCGAGTACAACTGAACCGACGCGTA
ACATTTCAGGTGATGGCTTCTACACCGCGTTCGTGTCTGTAGCACACAAC
GTGTACCATGTTCGCGTGGAGTGTACTTTTGCTATAGTGTTTAATGTCGA
GATCGTTTCGTTGCTGGGGTTGAGTTCAACGGGCGTTGATTTTTGAGTAG
GAGCTTGTTCTTCCTCGCCCTTCTTCGGGCTGTGCATTCGCTCTGACATA
TTCCAACAGATGAGAATGCCTACAGACAGTCCAGTTGGTTGTTCCTGATG
AGCGCTTCGAAAAGCCTTCGTACATGCTGCACGTATTCTTGATGGTGGTT
TTTCGTTGTATGTATGCAACAGCCTCCGTCTAATAGGCTTTGCAACAGAG
TACGTTTGAGCATTTCTCTCTTCTACGGTCACCGTTGTCACCCGTCATGA
GGAGCTGCTACCCAAGTGTGTGTGTGGTTGTGTGTCTTGTTTGTTTGCGT
CGACGGCGCTAACCGGCTGATCAATGAAACGACGTCCGTCTCAGCGCAGT
TAAATTTGGAAAACCCTTGTAAAGGCAATGATCCGGGTGAGGGGAGGGTC
ACGGGGGAGGCTAGGTGTGTGTGGAGTGACCGTGTGTTGCGTTGTGTTGT
GGAGTGTGTTTCTGGGGGCGTGCTCCGCCATTCAGAAGAAACACGGCAGG
GTTAACGTGCAAACAGGGTCACGCAAGTTGTGGTGTGTCGTTATTCCCCA
ATTGCAAACTGGGGTTTCTATGCCAGCCAAGACACAACGCTTTAGGTTCT
TACGCCAGAAAGCCAGTCTCACTAGGCTATCGTTTTTGTGACAGCGTGAG
GGGGCGTCCGGCTAAGCTATTCTCCGGGTGAAGGACAGAAACGATAGTAG
ACGAAGACAAACGCACGCACGCCTACCGTGGCATCTATACTTTTTGCTCG
TGTTCGTTTCGGCCCACTTCGGACCTTGCTTCCTGTTTCTATGTATCATT
TCCTTGTGTGTCTTTTTTTATTGCAGCATGGACCGCGCTAACCGGCTGAC
CAATGAAAAGACGTCAGTCTCAGTGCGGTGGAAGACAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:282855..288192-

>mRNA_E-siliculosus-1a_M_contig91.17209.1 ID=mRNA_E-siliculosus-1a_M_contig91.17209.1|Name=mRNA_E-siliculosus-1a_M_contig91.17209.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:282855..288192- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTTTTGAGACCACACTCCCCGGTAGCTCTGGTGTGTGGGCTGCTGAA
TGTGTGCGCTGCGTTCGTGCCCAGCAACACCGGCGGGATGGGGTTGACAC
CCATCGCTTCCTCAGCACTAGACTCAGCACCTTGCCGACCTGCTGCTGTG
TCTACAACCGGGTCGGGAGGCCACCGGCGCCAAATGGCGGTCACGATGTC
GAGCTCGGTGGCACCGGCTCCGAGGACGAAAGCGGAAAAAACAAGCGAGC
ATTTCAAGCTCAAGGACGGGGGCATGGTGGAGTTTGGGAGCGGTCAGCGC
GTTGAGATGGTTTTGAGACCACACTCCCCGGTAGCTCTGGTGTGTGGGCT
GCTGAATGTGTGCGCTGCGTTCGTGCCCAGCAACACCGGCGGGATGGGGT
TGACACCCATCGCTTCCTCAGCACTAGACTCAGCACCTTGCCGACCTGCT
GCTGTGTCTACAACCGGGTCGGGAGGCCACCGGCGCCAAATGGCGGTCAC
GATGTCGAGCTCGGTGGCACCGGCTCCGAGGACGAAAGCGGAAAAAACAA
GCGAGCATTTCAAGCTCAAGGACGGGGGCATGGTGGAGTTTGGGAGCGGT
CAGCGCGTTGAGGCTTCAATATCCGGTGCTCCTCTGGAGAGCATGCAGGA
GTACATTAGCGAACCCTCCCGCATTGTGTACGCGTGCTGGGAGCACAAGG
ATATCACGGACATGGGGAACGGCGTGTTTCGGATGGCCTTCCGGGGGCAG
AGCTTTCTGTCGATCTCGATCGATATGTCGGTAGATATCCAGCTGTGGAC
GGCGGAGGACGGCACGATCCAGTGCAAGTCGGTGGGCTACTCGGTCGACG
ACATGGCCAAGCTCTTGGGCCAGGCTTCAATATCCGGTGCTCCTCTGGAG
AGCATGCAGGAGTACATTAGCGAACCCTCCCGCATTGTGTACGCGTGCTG
GGAGCACAAGGATATCACGGACATGGGGAACGGCGTGTTTCGGATGGCCT
TCCGGGGGCAGAGCTTTCTGTCGATCTCGATCGATATGTCGGTAGATATC
CAGCTGTGGACGGCGGAGGACGGCACGATCCAGTGCAAGTCGGTGGGCTA
CTCGGTCGACGACATGGCCAAGCTCTTGGGCCAGGAATTCGTGGACACGT
TCTTTTTGGAGCTGGAGGGGGAGCTGAGGGTGGAGGAGATGGTAACCAAG
GTCAGGGCGCTTTCCCTGAAGAACACGCGCTTGGGTGGCGACGTGGCAGT
CACAATAGGCGGCAAGGAATTCGTGGACACGTTCTTTTTGGAGCTGGAGG
GGGAGCTGAGGGTGGAGGAGATGGTAACCAAGGTCAGGGCGCTTTCCCTG
AAGAACACGCGCTTGGGTGGCGACGTGGCAGTCACAATAGGCGGCAAGAT
GCCAGGCCTCTTGTCCGCGTCGCCGGAGCCTCTGGTCAAGTCGGCCGCCT
TGGGGATTAACAACAAGGTTCTCGAGTACGTGTCGAACACTTTCGTATCC
ACCGTCGCCGGCGACTACCGAAAATGGTCCAGGGATCAAAAGCTGGCGAA
ATAGATGCCAGGCCTCTTGTCCGCGTCGCCGGAGCCTCTGGTCAAGTCGG
CCGCCTTGGGGATTAACAACAAGGTTCTCGAGTACGTGTCGAACACTTTC
GTATCCACCGTCGCCGGCGACTACCGAAAATGGTCCAGGGATCAAAAGCT
GGCGAAATAG
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