mRNA_E-siliculosus-1a_M_contig91.17198.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 1.480e-134 Identity = 239/252 (94.84%), Postives = 241/252 (95.63%), Query Frame = 1
Query: 1 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKLPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXX---PQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 747
MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAK+ESDV+TKKAGTYVPRDKRKLPSADASNGNGLHQ APAPAATTPGA XXXXXXXXXXXXXXXXXXXXXXX PQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA
Sbjct: 1 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA) HSP 1 Score: 217 bits (553), Expect = 1.860e-62 Identity = 125/241 (51.87%), Postives = 156/241 (64.73%), Query Frame = 1
Query: 22 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKLPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFA 738
N TIY++NLNEKIKK +LKKSLHS+FSQFGKI+ I ACRG+KL+GQAWVVF +K+ ATNALRQMQGFPF+EK MRI F+KT+SDV+ K+ GTY R KRK P A A + QP+ AP A T AAG + P+ IL+A GLP + +++L LF+QY GFSE RM PG G AF+EF D+MQAG A+ LNGFKL+ + L L++A
Sbjct: 2 NETIYINNLNEKIKKEVLKKSLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKR-KRKAPPAPAPDAPA--QPS-APFAQTTAAAGK----------------------------------NNPPNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYA 204
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO) HSP 1 Score: 212 bits (540), Expect = 3.960e-60 Identity = 139/243 (57.20%), Postives = 174/243 (71.60%), Query Frame = 1
Query: 22 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKLPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARM--APGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
N TIY++NLNEKIKK LKKSL++VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPF++K MRIQ+AK++SD ++K GT+V R+KRK A HQ A APAA P +A XXXXXXXXXXXXXXXXXX P+NIL+A LP E +M+ LF+Q+PGF E RM A G AFIEF D+MQA +AL AL+ FK++ TNP+Q+++A+K
Sbjct: 8 NQTIYINNLNEKIKKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEKAERKRREHQ-AEAPAAGPPASA----------YXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK) HSP 1 Score: 212 bits (539), Expect = 4.710e-60 Identity = 125/249 (50.20%), Postives = 152/249 (61.04%), Query Frame = 1
Query: 28 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRK--------LPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
TIY++NLNEKIKK +LKKSLHS+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPF+EK MRI FAK +SD + K+ G Y P KR+ + P PAA A AV P PA +VPH IL+A LP + ++ML LF+QY G+ E RM PG G AFIEF D+MQAG AL LNGFKL+ + LQL++ARK
Sbjct: 11 TIYINNLNEKIKKDVLKKSLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFTAV---------------------QQVEQPVPA----NVPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN) HSP 1 Score: 206 bits (524), Expect = 3.510e-58 Identity = 120/247 (48.58%), Postives = 151/247 (61.13%), Query Frame = 1
Query: 22 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKL----PSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
N T+Y++NLNEKIKK LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+ ATNALRQMQGFPFF+K MRI FAK +SDV++K G++V R+KRK P A + L P PA AA A P N+L+A LP + +MLS LF+QY GF E RM PG G AF+EFAD+ QA +AL L+ FKL+ T+ L L+FA++
Sbjct: 7 NQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPKAPPAT-EALEAPKPAKAAKADKNA--------------------------------------TPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA) HSP 1 Score: 204 bits (520), Expect = 1.490e-57 Identity = 114/244 (46.72%), Postives = 152/244 (62.30%), Query Frame = 1
Query: 19 INHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKLPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
+N T+Y++NLNEKIKK +LKK+L+S+FSQFGKI+D+V CRG++L+GQAW+ FA+ AT+A+++MQGFPF++K MRI FAK++SD+I K GT+V R+KRK S A+N + HQ TP P P P N+L+A LP E Q ML LF+QY G+ E RM PG G AFIEFAD +QA +AL LNGF LS T+ L L+FA++
Sbjct: 11 VNQTLYINNLNEKIKKQVLKKALYSLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRESPPAANTDAAHQAPQKKQLPTP--------------------------------PTNLTP----PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI) HSP 1 Score: 203 bits (516), Expect = 5.720e-57 Identity = 109/242 (45.04%), Postives = 155/242 (64.05%), Query Frame = 1
Query: 22 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKLPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFAR 741
+ T+Y++N+NEKIKK +LKK+L+++FSQ+GK+++IVAC+G++L+GQAW+V+ + S ATNA+R++QGF F++K +RI FAKT+SD++ KK GT+ PR KR ++ +G AP PA P+P + +VPH IL+A LP E ML+ LF+QYPGF E RMAPG G AFIEF D +QAGIAL L+GF+LSA + LQL + +
Sbjct: 6 SQTLYINNINEKIKKDVLKKTLYALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQSSAMEDGARA-APPPA--------------------------QYKEPPVAKTPKPI--VNNVPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGK 218
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A3Q1F7D3_9TELE (U1 small nuclear ribonucleoprotein A n=5 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q1F7D3_9TELE) HSP 1 Score: 202 bits (513), Expect = 1.310e-56 Identity = 111/245 (45.31%), Postives = 154/245 (62.86%), Query Frame = 1
Query: 19 INHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRK-LPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQ--AFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
+NHTIY++NLNEKIKK LKKSL+++FSQFG+I+DI+ R LK+KGQA+V+F E + A+NALR MQGFPF++K MRIQ+AK +SD+I K GTYV RD++K + G G + P AA P AG + P++IL+ T LP E ++MLS LF Q+PGF E R+ PG AF+EF +++QAG A +AL GFK++ TN ++++FA+K
Sbjct: 5 LNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNLKMKGQAFVIFKEVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKPKGTEGGGTKKGVPGGAA-----------------------------------PMVAGVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEVQAGAARDALQGFKITQTNAMKISFAKK 214
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A3B4FC71_9CICH (U1 small nuclear ribonucleoprotein A n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4FC71_9CICH) HSP 1 Score: 199 bits (507), Expect = 9.690e-56 Identity = 111/245 (45.31%), Postives = 156/245 (63.67%), Query Frame = 1
Query: 19 INHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRK-LPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQ--AFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
+NHTIY++NLNEKIKK LKKSL+++FSQFG+I+DI+ R +K+KGQA+V+F E + A+NALR MQGFPF++K MRIQ++KT+SD+I K GTYV RD++K +G G + G AGA V AG + P++IL+ T LP E ++MLS LF Q+PGF E R+ PG AF+EF +++QAG A +AL GFK++ TN ++++FA+K
Sbjct: 8 LNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNIKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTYVERDRKKEKKKIKGPDGTGPKK----------GVAGAAMV---------------------------AGVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEVQAGAARDALQGFKITQTNAMKISFAKK 215
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA) HSP 1 Score: 199 bits (505), Expect = 1.930e-55 Identity = 116/243 (47.74%), Postives = 148/243 (60.91%), Query Frame = 1
Query: 22 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKTESDVITKKAGTYVPRDKRKLPSADASNGNGLHQPAPAPAATTPGAAGAVAVPXXXXXXXXXXXXXXXXXXXXXXXPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 744
N T+Y++NLNEKIKK LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+ ATNALRQMQGFPF++K MRI FAK++SD+I K+ GT+ PR+KRK P PAA P AA A+ P P+ + LP + + +ML LF+QY GF E RM PG G AF+EFAD+ QA +A L+GFKL+ T+ L L FA++
Sbjct: 7 NQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKRED-------------PKPAA--PAAAKALPAPGDAPP------------------PKVXXXXXXXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGNKGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAKR 216 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig91.17198.1 >prot_E-siliculosus-1a_M_contig91.17198.1 ID=prot_E-siliculosus-1a_M_contig91.17198.1|Name=mRNA_E-siliculosus-1a_M_contig91.17198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=250bp MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLback to top mRNA from alignment at E-siliculosus-1a_M_contig91:162144..168015- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig91.17198.1 ID=mRNA_E-siliculosus-1a_M_contig91.17198.1|Name=mRNA_E-siliculosus-1a_M_contig91.17198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5872bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:162144..168015- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:162144..168015- >mRNA_E-siliculosus-1a_M_contig91.17198.1 ID=mRNA_E-siliculosus-1a_M_contig91.17198.1|Name=mRNA_E-siliculosus-1a_M_contig91.17198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:162144..168015- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |