mRNA_E-siliculosus-1a_M_contig91.17194.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17194.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17194.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17194.1 vs. uniprot
Match: A0A6H5JDU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU3_9PHAE)

HSP 1 Score: 887 bits (2291), Expect = 0.000e+0
Identity = 490/657 (74.58%), Postives = 508/657 (77.32%), Query Frame = 3
Query:  558 MVELSEDPARHAHLSESIVSCFHAPGLPKSIGGAVDFSQFVSVMAHREQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKRSRKLEIKRAEQAKQKLLESSRSGSQNTRHLPARACLRPSFSPAPSCGDMVNAESLETASDGTGVVPQGAVKLRPELHPYSTSAAVRRAFLACRGRSSQCKENISGPNSSVQLKKKAVREATAVLALHHAPSPPSDGSPVTRTANAFRGRRWGIGSNGTGSSATVKKISTGHAAGGFVRYPSASVRRLRXXXXXXXXXAAGLPRWGRGNRGVVGSIVMEPADLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGEGVNSDRRGVMHELPMRSGVGGTDTVGGGDNTRGGGISSPPKAGEIDAAPLSAASLDEKEWRRAMSLGEGDWWEEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTAMTREVSHDLLVKSRDIGSRVSSSSSISLEPARKTVHHDGGDAQEFHPAEEPVAGEVGRGLLLPKRPENPTLRAREGRRPNGCRFLRERGXXXXXXXAAWPPPTPWRAPRLVRCMRRPDPTLGGVHLHNNG 2528
            MVELSEDPARH HLS+SIVSCFHAPG+PKSIGGAVDFSQFVSVMAHREQG KFNTLQDELRSEGLAAAKAHFA+IFRKEVVVRKLLDAGGTAGFMCSAFQMLFKA GLA SSSDR QKLRLLEET KSKRSRKLE  RA+QAK+KL                                                                                           +SVQLK +AVREATAVL LHHAP PP DGSPVTRTAN FRGRRWG+GSNGTGSSA VKK + G AAGGFVRYPSASVRRLR         AAGLPRWGRGNRGVVGSIVMEP DL SKGVRAFAVTSRRKD ILKRTPLCGRSAMA LPSWASCENSACDPGT PPPPLRQDTASIASSAG+G NS RRG  HE  M SGV GTD V GGDNT GG ISS PKAGEIDAAPLSA SLDE+EWRRAMSLG  DWW+EHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTA TRE SHD LVKSRDI SRVSSSS+ISLEP+RKTVH DG + QEFHPAEE VAG+VGRGLLLPKRPENPT+RAREGRRPNGCRFLR RGXXXXXX AAWPPPTPWRAPRLVRCMRRPDPTLGG HL+NNG
Sbjct:    1 MVELSEDPARHDHLSQSIVSCFHAPGVPKSIGGAVDFSQFVSVMAHREQGCKFNTLQDELRSEGLAAAKAHFADIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAGGLATSSSDRTQKLRLLEETDKSKRSRKLECTRAKQAKRKLF------------------------------------------------------------------------------------------ASVQLKNQAVREATAVLGLHHAPFPPMDGSPVTRTANTFRGRRWGVGSNGTGSSAAVKKFNIGLAAGGFVRYPSASVRRLRRHRRQRLPPAAGLPRWGRGNRGVVGSIVMEPTDLGSKGVRAFAVTSRRKDTILKRTPLCGRSAMATLPSWASCENSACDPGTGPPPPLRQDTASIASSAGQGDNSYRRGEAHEFLMHSGVRGTDAVVGGDNTLGGAISSLPKAGEIDAAPLSATSLDEEEWRRAMSLGGEDWWKEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTATTREASHDPLVKSRDICSRVSSSSTISLEPSRKTVHLDGSNVQEFHPAEESVAGKVGRGLLLPKRPENPTVRAREGRRPNGCRFLRGRGXXXXXXKAAWPPPTPWRAPRLVRCMRRPDPTLGGGHLYNNG 567          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17194.1 vs. uniprot
Match: D7FNU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU6_ECTSI)

HSP 1 Score: 679 bits (1753), Expect = 1.430e-236
Identity = 400/573 (69.81%), Postives = 407/573 (71.03%), Query Frame = 3
Query:  648 IGGAVDFSQFVSVMAHR-----EQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKRSRKLEIKRAEQAKQKLLESSRSGSQNTRHLPARACLRPSFSPAPSCGDMVNAESLETASDGTGVVPQGAVKLRPELHPYSTSAAVRRAFLACRGRSSQCKENISGPNSSVQLKKKAVREATAVLALHHAPSPPSDGSPVTRTANAFRGRRWGIGSNGTGSSATVKKISTGHAAGGFVRYPSASVRRLRXXXXXXXXXAAGLPRWGRGNRGVVGSIVMEPADLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGEGVNSDRRGVMHELPMRSGVGGTDTVGGGDNTRGGGISSPPKAGEIDAAPLSAASLDEKEWRRAMSLGEGDWWEEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTAMTREVSHDLLVKSRDIGSRVSSSSSISLEPARKTVHHDGGDAQEFHPAEEPVAGEVGRGLLLPKRPENPTL 2351
            IG  + F    S   HR     EQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSK+SRKLE KRAEQAK+KLLE                                                                                          SVQLKK+AVREATAVL LHHAPSPPS GSPVTRTANAFRGRR                                    LR XXX     A GLPRWGRGNRGVVG IVMEP DLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGE VNSDRRGVMHELPMRSGVGGTDTV  GDNTRGGGISSPPKA EIDAAPLSA SL+EKEWRRAMSLGE DWWEEHHPLFS Q SCGLSAATT MTHSVKTIATTIPTAMTREVSHD LVKSRDIGSRVSSS SISLEPARKTVH D GDAQEFHPAEEPVAG+VGRGLLLPKRPENPT+
Sbjct:    7 IGMGIAFFGLFSWTHHRYCCLQEQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKQSRKLECKRAEQAKRKLLE------------------------------------------------------------------------------------------SVQLKKQAVREATAVLGLHHAPSPPSVGSPVTRTANAFRGRR------------------------------------LRRXXXQHPPPATGLPRWGRGNRGVVGRIVMEPTDLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGESVNSDRRGVMHELPMRSGVGGTDTVVVGDNTRGGGISSPPKAREIDAAPLSATSLEEKEWRRAMSLGEEDWWEEHHPLFSQQLSCGLSAATT-MTHSVKTIATTIPTAMTREVSHDPLVKSRDIGSRVSSSGSISLEPARKTVHLDSGDAQEFHPAEEPVAGDVGRGLLLPKRPENPTV 452          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDU3_9PHAE0.000e+074.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNU6_ECTSI1.430e-23669.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:120365..124956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size2163
Model size2531
Exons7
Ec32 orthologEc-12_003320.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17194.1prot_E-siliculosus-1a_M_contig91.17194.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 120365..124588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936439.6969612-CDS-E-siliculosus-1a_M_contig91:120364..1216221622936439.6969612-CDS-E-siliculosus-1a_M_contig91:120364..121622Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 120365..121622 -
1696251079.3096309-CDS-E-siliculosus-1a_M_contig91:120364..1216221696251079.3096309-CDS-E-siliculosus-1a_M_contig91:120364..121622Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 120365..121622 -
1622936439.7140315-CDS-E-siliculosus-1a_M_contig91:121977..1222471622936439.7140315-CDS-E-siliculosus-1a_M_contig91:121977..122247Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 121978..122247 -
1696251079.3226552-CDS-E-siliculosus-1a_M_contig91:121977..1222471696251079.3226552-CDS-E-siliculosus-1a_M_contig91:121977..122247Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 121978..122247 -
1622936439.7274644-CDS-E-siliculosus-1a_M_contig91:122496..1226421622936439.7274644-CDS-E-siliculosus-1a_M_contig91:122496..122642Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 122497..122642 -
1696251079.3342159-CDS-E-siliculosus-1a_M_contig91:122496..1226421696251079.3342159-CDS-E-siliculosus-1a_M_contig91:122496..122642Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 122497..122642 -
1622936439.7394478-CDS-E-siliculosus-1a_M_contig91:122800..1229591622936439.7394478-CDS-E-siliculosus-1a_M_contig91:122800..122959Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 122801..122959 -
1696251079.3453867-CDS-E-siliculosus-1a_M_contig91:122800..1229591696251079.3453867-CDS-E-siliculosus-1a_M_contig91:122800..122959Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 122801..122959 -
1622936439.7573118-CDS-E-siliculosus-1a_M_contig91:123254..1234081622936439.7573118-CDS-E-siliculosus-1a_M_contig91:123254..123408Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 123255..123408 -
1696251079.3580592-CDS-E-siliculosus-1a_M_contig91:123254..1234081696251079.3580592-CDS-E-siliculosus-1a_M_contig91:123254..123408Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 123255..123408 -
1622936439.7704356-CDS-E-siliculosus-1a_M_contig91:123602..1237001622936439.7704356-CDS-E-siliculosus-1a_M_contig91:123602..123700Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 123603..123700 -
1696251079.3694544-CDS-E-siliculosus-1a_M_contig91:123602..1237001696251079.3694544-CDS-E-siliculosus-1a_M_contig91:123602..123700Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 123603..123700 -
1622936439.7828956-CDS-E-siliculosus-1a_M_contig91:124510..1245881622936439.7828956-CDS-E-siliculosus-1a_M_contig91:124510..124588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 124511..124588 -
1696251079.3789625-CDS-E-siliculosus-1a_M_contig91:124510..1245881696251079.3789625-CDS-E-siliculosus-1a_M_contig91:124510..124588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 124511..124588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936439.8028357-UTR-E-siliculosus-1a_M_contig91:124588..1249561622936439.8028357-UTR-E-siliculosus-1a_M_contig91:124588..124956Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 124589..124956 -
1696251079.388697-UTR-E-siliculosus-1a_M_contig91:124588..1249561696251079.388697-UTR-E-siliculosus-1a_M_contig91:124588..124956Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 124589..124956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17194.1

>prot_E-siliculosus-1a_M_contig91.17194.1 ID=prot_E-siliculosus-1a_M_contig91.17194.1|Name=mRNA_E-siliculosus-1a_M_contig91.17194.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=721bp
MSLIEGFEVQKWIRERGRTREAEVIVANKGSDDRWIDLQLIFNHLDAQRR
GKISHSAIRNALSMVELSEDPARHAHLSESIVSCFHAPGLPKSIGGAVDF
SQFVSVMAHREQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLD
AGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKRSRKLEIK
RAEQAKQKLLESSRSGSQNTRHLPARACLRPSFSPAPSCGDMVNAESLET
ASDGTGVVPQGAVKLRPELHPYSTSAAVRRAFLACRGRSSQCKENISGPN
SSVQLKKKAVREATAVLALHHAPSPPSDGSPVTRTANAFRGRRWGIGSNG
TGSSATVKKISTGHAAGGFVRYPSASVRRLRRRRRQRPPPAAGLPRWGRG
NRGVVGSIVMEPADLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPS
WASCENSACDPGTTPPPPLRQDTASIASSAGEGVNSDRRGVMHELPMRSG
VGGTDTVGGGDNTRGGGISSPPKAGEIDAAPLSAASLDEKEWRRAMSLGE
GDWWEEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTAMTREVSHDLL
VKSRDIGSRVSSSSSISLEPARKTVHHDGGDAQEFHPAEEPVAGEVGRGL
LLPKRPENPTLRAREGRRPNGCRFLRERGGGGGGAKAAWPPPTPWRAPRL
VRCMRRPDPTLGGVHLHNNG*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig91:120365..124956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17194.1 ID=mRNA_E-siliculosus-1a_M_contig91.17194.1|Name=mRNA_E-siliculosus-1a_M_contig91.17194.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4592bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:120365..124956- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGAGAGTATCAGGGCGTATGACTGTGCTCATCGACCACCAAGCTA GGTAATTTGCACACGACGTGTACGGAATGGAGGCCTTGAACGATCGAACA TGCGAAAACTCACTGGATGCGGCGCAATAATCGTTTGAAAACAGTTCTGA CTGATGAACCGGCATTTTACTGGCCCGCACGCGGCACAATCATTTGCGAG TCTGGGTCACCCCGCTCAACGCTCAACCATCAAAACGTGCTCATTCATTG TGCTGGGGGGTGCCCACGACTGCTCCAGCTGTTTGGGAAAGTGTTGCTGG GTGTACGGTGATGTCAAATTGACGAGGATCACTCCGTGCTGTTCTGTCCA GTAGACTTATGCATACGTATGTCCTTGATCGAAGGGTTCGAGGTCCAAAA ATGGATACGCGAGAGAGGAAGAACAAGGGAGGCAGAGGTTATCGTGGTAA GTTGGCATACCAAATGTGCAGGCGTGGCATTGTACCCGGTTCAAGAATGT TCATGTTCAATGGACTGATCGATCCACAGATAACGCTACCGCCACCTCTG TTGTGTGCATGATGACGTCAATTGGAGCCCTTCTCAATTGCACTCATTCG AGAGTGTGGGATTTTGCAATTCACACCCAAATCCTCAGCCAAACATGTGT GTGCAGTTTTGGCAACCCGCTGCGGTTGTTCGTCCACTTCTCACACACTG GGAACTGAACAAAATAATACTATTACATAAGTGTACTGCTGTGTGAGGGC TGCAGATGGTAACCTCGTACACCACTTTCACTGATAAGAAAAGCTGTAGG ATGGGAGCTGATACGCCTGTGAGATGTATGAATTCCGCGTTTCGTGCCTA ACTGCAGCACATCGAGGAAGGCGATTGTTCGTGAGAGTACACCCTTGAGG GAAGGGTGGCCTGCTCTACCGGGTATGCATTGCAAGCGCCGGTTAATAAA TTCCAGGACTAGACCGGGGGAGCACGGTAGTGAAAAGAAAGGTGTTGCGG CTAGAGGGTCAGCTGGATACTTCGACACAACGTGAAATGTTCCTCACGCG GGTGTTCAGAACCGCCGACTGCTCTGTGTCATACACATTGCTACTGCAGC ATCCTAAAGAATCCTTGTCGACAGTTCAAATTCGTGTGGGGTGGTGGCTC ACAACAGTCTTTCCCATTAGAGACTGATTAGCCCGGAGGTGGTGACACTT TCGCCCCTTGAACGTATTCTTAGGCGCACACGCAACTTTCTCCGGAATCG TCACAGGCGAACAAAGGCTCTGATGACCGATGGATTGACCTTCAACTCAT CTTCAACCACTTGGATGCTCAGCGGAGGGGAAAAATAAGCCATAGCGCAA TCAGGTGCGACCTCGTCCATCAATCATGGGTGCCGGTGACCCACGGGACC GACCCGATCAAAGAATGCTCCATTGAAAAAACAAGTTCGCTTTGATGTTG TTGTGTTCGTCACAAAGCTGCCCGCTTTCGCCGAGATCTTTTCCCACGAA CGCGGTTATTTTAGTGGTCATTGTTGTGCCGTATCCATTTCGCACCAGGA ACGCTCTCAGCATGGTGGAGCTCAGTGAGGACCCAGCACGACACGCCCAC CTTTCAGAAAGTATCGTCAGCTGCTTCCATGCACCCGGTCTACCCAAGTC AATCGGCGGGGCGGTAGATTTCAGCCAATTCGTCAGTGTCATGGCCCACC GGGTAAAGGGTTCGTCTTTTGTGATACTTCTTGATCATTCCCTACTAGAA CTGGATGAACGCGCACGTGCGAACGAAAGACCGCCATGTGGTGTGTCACT CTTCGCCGTTGCCACCCGAGCTTCCACACAGCCGCTACACCAAAAAGCGT CCCATGGCGAAGGGGTGCACTACCACCTGACACCGTGATAATTGCTAGGG ACCACAACAACCTATGAACATGCAGTGGCAGATAGGGATGGGCATCGCTT TCTTCGACCCATTCAGTTGGACCTACCACCGTTGTTGCTGCCTGCAGGAG CAAGGGCGCAAGTTCAACACACTTCAAGACGAGCTGAGAAGTGAGGGCCT AGCCGCGGCCAAGGCGCACTTCGCCAACATTTTTCGCAAGGAGGTCGTCG TACGGAAGCTGCTGGACGCCGGAGGAACGGCGGGCTTCATGTGCTCGGCC TTTCAGGTGGGCGTACAGGCTTCACACAGCAGTTTGGCGCCGATGTTGTT GACCGCGCTCACGCTCAGAAAACAAGGTTGGATGATAAGTTGGTCTTGGA TCGCGCGTCAGGTTATGCTTCCAATGCGTCTGTGTGTTGCATCTTCGTTC CACTTCGTGCGCAGATGCTTTTCAAGGCCGAAGGGCTCGCCGCATCTTCG AGTGATCGCATCCAGAAGCTCCGGCTCCTGGAGGAGACAGTCAAATCCAA GCGATCAAGAAAACTGGAGATAAAGAGGGCCGAGCAGGCGAAACAAAAAC TTCTCGAAAGGTCGGCGGGTCTGTCCGGTCGCTGTATTCATTCTATCTTG GCTGCTTCCATCAGGCAGATAGACCACAAGCGCGATATATGCCCACGTCG CCGCTTCTTCATCAAGTGTCGTCCCGTTTTCACTCCTCGGCAACCGACTG AAAGCCCAGTTGCTCCAACCTCGAACGCGATCACGTATGGTACTGGCCAG CCTTCTCCGTCATTTTGCTCATTCTTCCTCTTCATCCCTTCTCCACGCCC TAAGAGTAGCTCCAGGTCTGGCAGCCAGAACACTCGGCACTTGCCAGCCC GTGCTTGCTTGCGTCCAAGCTTCAGCCCTGCGCCAAGTTGTGGCGACATG GTGAACGCCGAAAGCTTGGAAACTGCGTCTGATGGCACCGGGGTAGTTCC ACAAGGCGCCGTAAAGCTACGACCCGAGTTGCACCCGTACTCCACAAGTG CTGCCGTTAGACGAGCGTTTCTGGCGTGTAGAGGACGGTCCAGCCAGTGC AAGGAGAACATCAGTGGACCCAATAGCAGGTGATTTGATCACGAGTCTTG GAGAGGGATGGGATCTAACGCCATTAAGTAGTTTACCTAGGCTCTGAACA TCCGTCATAGAACTGCGTTTCCGTTCAGGCACAGGCAGACCTCGGTCGGA AACATTGCTTTCGGTTAACCCTCGGATCATTGGCTTTTGCAAAACATTCC CGAAGAGCACTCGTTGATACATGTTTGAGGTTCATGCAGGTCGAGGTCTC GCGCGTCCCGCATTCGGTACTTCTAATAGAAATACCGAATGGAGACGAAC TCATGTCGTCGAGTCCACGAGCCACTAACGTCTGTCTACATTCCATCCAC CACTCTTCAAACATACCCCACTCGTCGGAGTCAGCGTTCAGCTGAAGAAA AAAGCAGTCCGAGAGGCGACAGCGGTGCTGGCACTTCACCACGCCCCGTC TCCACCGAGCGACGGGAGCCCCGTCACTCGAACGGCGAACGCGTTTCGAG GCCGAAGGTGGGGGATCGGCAGCAACGGCACCGGCTCTAGCGCTACTGTG AAAAAAATAAGCACCGGTCATGCGGCCGGGGGTTTCGTGCGATATCCGTC GGCGAGCGTACGCAGGCTTCGACGTCGCCGCCGACAACGCCCTCCACCGG CAGCAGGCTTGCCGCGGTGGGGGCGCGGAAATCGTGGTGTCGTCGGTAGC ATCGTGATGGAACCGGCTGACCTGGAGAGCAAGGGCGTCCGTGCCTTCGC GGTTACCTCCCGTCGAAAGGACGCCATCCTGAAGCGCACTCCGCTGTGCG GCCGAAGCGCGATGGCGAGGCTGCCGTCGTGGGCGTCGTGCGAAAACTCC GCTTGCGATCCCGGAACGACCCCCCCGCCTCCGCTCCGGCAGGACACCGC AAGCATTGCGAGCTCTGCCGGAGAGGGCGTTAATAGTGACCGGCGAGGCG TGATGCACGAGTTGCCCATGCGCTCTGGTGTAGGAGGTACGGACACGGTT GGTGGTGGTGACAATACCCGGGGAGGCGGGATATCATCGCCGCCGAAAGC CGGAGAGATTGACGCCGCACCGCTGTCTGCGGCAAGTCTCGACGAGAAAG AGTGGCGGCGGGCGATGAGTCTCGGGGAGGGGGATTGGTGGGAGGAGCAC CACCCGTTGTTCTCCCCGCAATTTTCGTGCGGTCTTTCGGCGGCAACAAC AACGATGACGCACTCCGTGAAGACGATAGCCACCACGATACCAACGGCCA TGACGCGCGAAGTCTCTCACGACCTCCTCGTCAAGTCGAGGGACATCGGC AGCAGGGTTAGCAGCAGCAGCAGCATCAGCCTCGAACCCGCCCGGAAGAC AGTCCACCACGACGGCGGTGACGCCCAGGAGTTCCATCCCGCCGAAGAAC CCGTCGCAGGGGAGGTTGGACGGGGGCTGCTGCTACCGAAGAGGCCGGAA AACCCGACGCTGAGAGCGAGAGAGGGAAGGAGGCCAAACGGTTGTCGGTT CCTTCGAGAAAGAGGAGGAGGAGGAGGTGGTGCGAAGGCGGCGTGGCCAC CCCCGACTCCGTGGCGTGCACCTCGCCTTGTGAGATGCATGCGACGCCCT GACCCGACACTCGGAGGTGTCCATTTGCACAACAACGGCTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:120365..124956-

>mRNA_E-siliculosus-1a_M_contig91.17194.1 ID=mRNA_E-siliculosus-1a_M_contig91.17194.1|Name=mRNA_E-siliculosus-1a_M_contig91.17194.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4326bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:120365..124956- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCTTGATCGAAGGGTTCGAGGTCCAAAAATGGATACGCGAGAGAGG
AAGAACAAGGGAGGCAGAGGTTATCGTGATGTCCTTGATCGAAGGGTTCG
AGGTCCAAAAATGGATACGCGAGAGAGGAAGAACAAGGGAGGCAGAGGTT
ATCGTGGCGAACAAAGGCTCTGATGACCGATGGATTGACCTTCAACTCAT
CTTCAACCACTTGGATGCTCAGCGGAGGGGAAAAATAAGCCATAGCGCAA
TCAGGCGAACAAAGGCTCTGATGACCGATGGATTGACCTTCAACTCATCT
TCAACCACTTGGATGCTCAGCGGAGGGGAAAAATAAGCCATAGCGCAATC
AGGAACGCTCTCAGCATGGTGGAGCTCAGTGAGGACCCAGCACGACACGC
CCACCTTTCAGAAAGTATCGTCAGCTGCTTCCATGCACCCGGTCTACCCA
AGTCAATCGGCGGGGCGGTAGATTTCAGCCAATTCGTCAGTGTCATGGCC
CACCGGGAACGCTCTCAGCATGGTGGAGCTCAGTGAGGACCCAGCACGAC
ACGCCCACCTTTCAGAAAGTATCGTCAGCTGCTTCCATGCACCCGGTCTA
CCCAAGTCAATCGGCGGGGCGGTAGATTTCAGCCAATTCGTCAGTGTCAT
GGCCCACCGGGAGCAAGGGCGCAAGTTCAACACACTTCAAGACGAGCTGA
GAAGTGAGGGCCTAGCCGCGGCCAAGGCGCACTTCGCCAACATTTTTCGC
AAGGAGGTCGTCGTACGGAAGCTGCTGGACGCCGGAGGAACGGCGGGCTT
CATGTGCTCGGCCTTTCAGGAGCAAGGGCGCAAGTTCAACACACTTCAAG
ACGAGCTGAGAAGTGAGGGCCTAGCCGCGGCCAAGGCGCACTTCGCCAAC
ATTTTTCGCAAGGAGGTCGTCGTACGGAAGCTGCTGGACGCCGGAGGAAC
GGCGGGCTTCATGTGCTCGGCCTTTCAGATGCTTTTCAAGGCCGAAGGGC
TCGCCGCATCTTCGAGTGATCGCATCCAGAAGCTCCGGCTCCTGGAGGAG
ACAGTCAAATCCAAGCGATCAAGAAAACTGGAGATAAAGAGGGCCGAGCA
GGCGAAACAAAAACTTCTCGAAAGATGCTTTTCAAGGCCGAAGGGCTCGC
CGCATCTTCGAGTGATCGCATCCAGAAGCTCCGGCTCCTGGAGGAGACAG
TCAAATCCAAGCGATCAAGAAAACTGGAGATAAAGAGGGCCGAGCAGGCG
AAACAAAAACTTCTCGAAAGCTCCAGGTCTGGCAGCCAGAACACTCGGCA
CTTGCCAGCCCGTGCTTGCTTGCGTCCAAGCTTCAGCCCTGCGCCAAGTT
GTGGCGACATGGTGAACGCCGAAAGCTTGGAAACTGCGTCTGATGGCACC
GGGGTAGTTCCACAAGGCGCCGTAAAGCTACGACCCGAGTTGCACCCGTA
CTCCACAAGTGCTGCCGTTAGACGAGCGTTTCTGGCGTGTAGAGGACGGT
CCAGCCAGTGCAAGGAGAACATCAGTGGACCCAATAGCAGCTCCAGGTCT
GGCAGCCAGAACACTCGGCACTTGCCAGCCCGTGCTTGCTTGCGTCCAAG
CTTCAGCCCTGCGCCAAGTTGTGGCGACATGGTGAACGCCGAAAGCTTGG
AAACTGCGTCTGATGGCACCGGGGTAGTTCCACAAGGCGCCGTAAAGCTA
CGACCCGAGTTGCACCCGTACTCCACAAGTGCTGCCGTTAGACGAGCGTT
TCTGGCGTGTAGAGGACGGTCCAGCCAGTGCAAGGAGAACATCAGTGGAC
CCAATAGCAGCGTTCAGCTGAAGAAAAAAGCAGTCCGAGAGGCGACAGCG
GTGCTGGCACTTCACCACGCCCCGTCTCCACCGAGCGACGGGAGCCCCGT
CACTCGAACGGCGAACGCGTTTCGAGGCCGAAGGTGGGGGATCGGCAGCA
ACGGCACCGGCTCTAGCGCTACTGTGAAAAAAATAAGCACCGGTCATGCG
GCCGGGGGTTTCGTGCGATATCCGTCGGCGAGCGTACGCAGGCTTCGACG
TCGCCGCCGACAACGCCCTCCACCGGCAGCAGGCTTGCCGCGGTGGGGGC
GCGGAAATCGTGGTGTCGTCGGTAGCATCGTGATGGAACCGGCTGACCTG
GAGAGCAAGGGCGTCCGTGCCTTCGCGGTTACCTCCCGTCGAAAGGACGC
CATCCTGAAGCGCACTCCGCTGTGCGGCCGAAGCGCGATGGCGAGGCTGC
CGTCGTGGGCGTCGTGCGAAAACTCCGCTTGCGATCCCGGAACGACCCCC
CCGCCTCCGCTCCGGCAGGACACCGCAAGCATTGCGAGCTCTGCCGGAGA
GGGCGTTAATAGTGACCGGCGAGGCGTGATGCACGAGTTGCCCATGCGCT
CTGGTGTAGGAGGTACGGACACGGTTGGTGGTGGTGACAATACCCGGGGA
GGCGGGATATCATCGCCGCCGAAAGCCGGAGAGATTGACGCCGCACCGCT
GTCTGCGGCAAGTCTCGACGAGAAAGAGTGGCGGCGGGCGATGAGTCTCG
GGGAGGGGGATTGGTGGGAGGAGCACCACCCGTTGTTCTCCCCGCAATTT
TCGTGCGGTCTTTCGGCGGCAACAACAACGATGACGCACTCCGTGAAGAC
GATAGCCACCACGATACCAACGGCCATGACGCGCGAAGTCTCTCACGACC
TCCTCGTCAAGTCGAGGGACATCGGCAGCAGGGTTAGCAGCAGCAGCAGC
ATCAGCCTCGAACCCGCCCGGAAGACAGTCCACCACGACGGCGGTGACGC
CCAGGAGTTCCATCCCGCCGAAGAACCCGTCGCAGGGGAGGTTGGACGGG
GGCTGCTGCTACCGAAGAGGCCGGAAAACCCGACGCTGAGAGCGAGAGAG
GGAAGGAGGCCAAACGGTTGTCGGTTCCTTCGAGAAAGAGGAGGAGGAGG
AGGTGGTGCGAAGGCGGCGTGGCCACCCCCGACTCCGTGGCGTGCACCTC
GCCTTGTGAGATGCATGCGACGCCCTGACCCGACACTCGGAGGTGTCCAT
TTGCACAACAACGGCTAGCGTTCAGCTGAAGAAAAAAGCAGTCCGAGAGG
CGACAGCGGTGCTGGCACTTCACCACGCCCCGTCTCCACCGAGCGACGGG
AGCCCCGTCACTCGAACGGCGAACGCGTTTCGAGGCCGAAGGTGGGGGAT
CGGCAGCAACGGCACCGGCTCTAGCGCTACTGTGAAAAAAATAAGCACCG
GTCATGCGGCCGGGGGTTTCGTGCGATATCCGTCGGCGAGCGTACGCAGG
CTTCGACGTCGCCGCCGACAACGCCCTCCACCGGCAGCAGGCTTGCCGCG
GTGGGGGCGCGGAAATCGTGGTGTCGTCGGTAGCATCGTGATGGAACCGG
CTGACCTGGAGAGCAAGGGCGTCCGTGCCTTCGCGGTTACCTCCCGTCGA
AAGGACGCCATCCTGAAGCGCACTCCGCTGTGCGGCCGAAGCGCGATGGC
GAGGCTGCCGTCGTGGGCGTCGTGCGAAAACTCCGCTTGCGATCCCGGAA
CGACCCCCCCGCCTCCGCTCCGGCAGGACACCGCAAGCATTGCGAGCTCT
GCCGGAGAGGGCGTTAATAGTGACCGGCGAGGCGTGATGCACGAGTTGCC
CATGCGCTCTGGTGTAGGAGGTACGGACACGGTTGGTGGTGGTGACAATA
CCCGGGGAGGCGGGATATCATCGCCGCCGAAAGCCGGAGAGATTGACGCC
GCACCGCTGTCTGCGGCAAGTCTCGACGAGAAAGAGTGGCGGCGGGCGAT
GAGTCTCGGGGAGGGGGATTGGTGGGAGGAGCACCACCCGTTGTTCTCCC
CGCAATTTTCGTGCGGTCTTTCGGCGGCAACAACAACGATGACGCACTCC
GTGAAGACGATAGCCACCACGATACCAACGGCCATGACGCGCGAAGTCTC
TCACGACCTCCTCGTCAAGTCGAGGGACATCGGCAGCAGGGTTAGCAGCA
GCAGCAGCATCAGCCTCGAACCCGCCCGGAAGACAGTCCACCACGACGGC
GGTGACGCCCAGGAGTTCCATCCCGCCGAAGAACCCGTCGCAGGGGAGGT
TGGACGGGGGCTGCTGCTACCGAAGAGGCCGGAAAACCCGACGCTGAGAG
CGAGAGAGGGAAGGAGGCCAAACGGTTGTCGGTTCCTTCGAGAAAGAGGA
GGAGGAGGAGGTGGTGCGAAGGCGGCGTGGCCACCCCCGACTCCGTGGCG
TGCACCTCGCCTTGTGAGATGCATGCGACGCCCTGACCCGACACTCGGAG
GTGTCCATTTGCACAACAACGGCTAG
back to top