mRNA_E-siliculosus-1a_M_contig91.17194.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17194.1 vs. uniprot
Match: A0A6H5JDU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU3_9PHAE) HSP 1 Score: 887 bits (2291), Expect = 0.000e+0 Identity = 490/657 (74.58%), Postives = 508/657 (77.32%), Query Frame = 3
Query: 558 MVELSEDPARHAHLSESIVSCFHAPGLPKSIGGAVDFSQFVSVMAHREQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKRSRKLEIKRAEQAKQKLLESSRSGSQNTRHLPARACLRPSFSPAPSCGDMVNAESLETASDGTGVVPQGAVKLRPELHPYSTSAAVRRAFLACRGRSSQCKENISGPNSSVQLKKKAVREATAVLALHHAPSPPSDGSPVTRTANAFRGRRWGIGSNGTGSSATVKKISTGHAAGGFVRYPSASVRRLRXXXXXXXXXAAGLPRWGRGNRGVVGSIVMEPADLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGEGVNSDRRGVMHELPMRSGVGGTDTVGGGDNTRGGGISSPPKAGEIDAAPLSAASLDEKEWRRAMSLGEGDWWEEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTAMTREVSHDLLVKSRDIGSRVSSSSSISLEPARKTVHHDGGDAQEFHPAEEPVAGEVGRGLLLPKRPENPTLRAREGRRPNGCRFLRERGXXXXXXXAAWPPPTPWRAPRLVRCMRRPDPTLGGVHLHNNG 2528
MVELSEDPARH HLS+SIVSCFHAPG+PKSIGGAVDFSQFVSVMAHREQG KFNTLQDELRSEGLAAAKAHFA+IFRKEVVVRKLLDAGGTAGFMCSAFQMLFKA GLA SSSDR QKLRLLEET KSKRSRKLE RA+QAK+KL +SVQLK +AVREATAVL LHHAP PP DGSPVTRTAN FRGRRWG+GSNGTGSSA VKK + G AAGGFVRYPSASVRRLR AAGLPRWGRGNRGVVGSIVMEP DL SKGVRAFAVTSRRKD ILKRTPLCGRSAMA LPSWASCENSACDPGT PPPPLRQDTASIASSAG+G NS RRG HE M SGV GTD V GGDNT GG ISS PKAGEIDAAPLSA SLDE+EWRRAMSLG DWW+EHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTA TRE SHD LVKSRDI SRVSSSS+ISLEP+RKTVH DG + QEFHPAEE VAG+VGRGLLLPKRPENPT+RAREGRRPNGCRFLR RGXXXXXX AAWPPPTPWRAPRLVRCMRRPDPTLGG HL+NNG
Sbjct: 1 MVELSEDPARHDHLSQSIVSCFHAPGVPKSIGGAVDFSQFVSVMAHREQGCKFNTLQDELRSEGLAAAKAHFADIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAGGLATSSSDRTQKLRLLEETDKSKRSRKLECTRAKQAKRKLF------------------------------------------------------------------------------------------ASVQLKNQAVREATAVLGLHHAPFPPMDGSPVTRTANTFRGRRWGVGSNGTGSSAAVKKFNIGLAAGGFVRYPSASVRRLRRHRRQRLPPAAGLPRWGRGNRGVVGSIVMEPTDLGSKGVRAFAVTSRRKDTILKRTPLCGRSAMATLPSWASCENSACDPGTGPPPPLRQDTASIASSAGQGDNSYRRGEAHEFLMHSGVRGTDAVVGGDNTLGGAISSLPKAGEIDAAPLSATSLDEEEWRRAMSLGGEDWWKEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTATTREASHDPLVKSRDICSRVSSSSTISLEPSRKTVHLDGSNVQEFHPAEESVAGKVGRGLLLPKRPENPTVRAREGRRPNGCRFLRGRGXXXXXXKAAWPPPTPWRAPRLVRCMRRPDPTLGGGHLYNNG 567
BLAST of mRNA_E-siliculosus-1a_M_contig91.17194.1 vs. uniprot
Match: D7FNU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU6_ECTSI) HSP 1 Score: 679 bits (1753), Expect = 1.430e-236 Identity = 400/573 (69.81%), Postives = 407/573 (71.03%), Query Frame = 3
Query: 648 IGGAVDFSQFVSVMAHR-----EQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKRSRKLEIKRAEQAKQKLLESSRSGSQNTRHLPARACLRPSFSPAPSCGDMVNAESLETASDGTGVVPQGAVKLRPELHPYSTSAAVRRAFLACRGRSSQCKENISGPNSSVQLKKKAVREATAVLALHHAPSPPSDGSPVTRTANAFRGRRWGIGSNGTGSSATVKKISTGHAAGGFVRYPSASVRRLRXXXXXXXXXAAGLPRWGRGNRGVVGSIVMEPADLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGEGVNSDRRGVMHELPMRSGVGGTDTVGGGDNTRGGGISSPPKAGEIDAAPLSAASLDEKEWRRAMSLGEGDWWEEHHPLFSPQFSCGLSAATTTMTHSVKTIATTIPTAMTREVSHDLLVKSRDIGSRVSSSSSISLEPARKTVHHDGGDAQEFHPAEEPVAGEVGRGLLLPKRPENPTL 2351
IG + F S HR EQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSK+SRKLE KRAEQAK+KLLE SVQLKK+AVREATAVL LHHAPSPPS GSPVTRTANAFRGRR LR XXX A GLPRWGRGNRGVVG IVMEP DLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGE VNSDRRGVMHELPMRSGVGGTDTV GDNTRGGGISSPPKA EIDAAPLSA SL+EKEWRRAMSLGE DWWEEHHPLFS Q SCGLSAATT MTHSVKTIATTIPTAMTREVSHD LVKSRDIGSRVSSS SISLEPARKTVH D GDAQEFHPAEEPVAG+VGRGLLLPKRPENPT+
Sbjct: 7 IGMGIAFFGLFSWTHHRYCCLQEQGRKFNTLQDELRSEGLAAAKAHFANIFRKEVVVRKLLDAGGTAGFMCSAFQMLFKAEGLAASSSDRIQKLRLLEETVKSKQSRKLECKRAEQAKRKLLE------------------------------------------------------------------------------------------SVQLKKQAVREATAVLGLHHAPSPPSVGSPVTRTANAFRGRR------------------------------------LRRXXXQHPPPATGLPRWGRGNRGVVGRIVMEPTDLESKGVRAFAVTSRRKDAILKRTPLCGRSAMARLPSWASCENSACDPGTTPPPPLRQDTASIASSAGESVNSDRRGVMHELPMRSGVGGTDTVVVGDNTRGGGISSPPKAREIDAAPLSATSLEEKEWRRAMSLGEEDWWEEHHPLFSQQLSCGLSAATT-MTHSVKTIATTIPTAMTREVSHDPLVKSRDIGSRVSSSGSISLEPARKTVHLDSGDAQEFHPAEEPVAGDVGRGLLLPKRPENPTV 452 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig91.17194.1 >prot_E-siliculosus-1a_M_contig91.17194.1 ID=prot_E-siliculosus-1a_M_contig91.17194.1|Name=mRNA_E-siliculosus-1a_M_contig91.17194.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=721bp MSLIEGFEVQKWIRERGRTREAEVIVANKGSDDRWIDLQLIFNHLDAQRRback to top mRNA from alignment at E-siliculosus-1a_M_contig91:120365..124956- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig91.17194.1 ID=mRNA_E-siliculosus-1a_M_contig91.17194.1|Name=mRNA_E-siliculosus-1a_M_contig91.17194.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4592bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:120365..124956- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:120365..124956- >mRNA_E-siliculosus-1a_M_contig91.17194.1 ID=mRNA_E-siliculosus-1a_M_contig91.17194.1|Name=mRNA_E-siliculosus-1a_M_contig91.17194.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4326bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:120365..124956- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |