mRNA_E-siliculosus-1a_M_contig91.17186.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17186.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17186.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17186.1 vs. uniprot
Match: D7FNT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT9_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 2.160e-116
Identity = 194/209 (92.82%), Postives = 197/209 (94.26%), Query Frame = 1 
Query:    1 MPQVAESPFSESLQEELRVAITILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASXXXXXXXXXXXXAPPRLVVTQSPVPNADSXXXXXXXFETEGPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAALRRVEKVVQRAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFRSYGRDASAK 627
            MPQVAESPFSESLQEELRVAI ILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPAS   X   XXX  APPRL VTQSPVPNADSXXXXXXXFETEGPEWDA+KVQYGLPMGARNTYDIDDMEKMNPEEYQAALR  EKVV+RAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFRSYGR+ASAK
Sbjct:    1 MPQVAESPFSESLQEELRVAIKILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASXEAAXXXAAAPPRLAVTQSPVPNADSXXXXXXXFETEGPEWDAEKVQYGLPMGARNTYDIDDMEKMNPEEYQAALR--EKVVERAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFRSYGRNASAK 207
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17186.1 vs. uniprot
Match: A0A836C7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.520e-27
Identity = 82/173 (47.40%), Postives = 111/173 (64.16%), Query Frame = 1 
Query:   13 AESPFSESLQEELRVAITILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASXXXXXXXXXXXXAPPRLVVTQSPVPNADSXXXXXXXFETEGPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAALRRVEKVVQRAQSVRKTGSYGNIVSNEYLKFLGKNP 531
            A +PF++ +QE L+ AI +L+ RL+   P++R EF+RFE A+  I++DA+P        +  XXXXXXXXXX                 XXXXX   E+EGP WDA K  YG+P+G RN+Y ID M+ M+P++YQAALR  EKV++R    RKTG+YGN  +N YL FL K+P
Sbjct:   84 AAAPFTDEMQEHLQTAINLLSRRLKSGVPLNRPEFDRFEEAIDAIIKDAVPH------LAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMESEGPAWDASKG-YGMPVGVRNSYTIDGMDDMSPDDYQAALR--EKVLKRVTKARKTGNYGNRAANAYLSFLDKSP 247
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNT9_ECTSI2.160e-11692.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7S9_9STRA6.520e-2747.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:49531..52410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size633
Model size633
Exons4
Ec32 orthologEc-12_003400.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2EA2C@1,2SGBW@2759
Seed eggNOG ortholog2880.D7FNT9
Seed ortholog evalue6.6e-92
Seed ortholog score343.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17186.1prot_E-siliculosus-1a_M_contig91.17186.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 49531..52410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936437.9319623-CDS-E-siliculosus-1a_M_contig91:49530..496781622936437.9319623-CDS-E-siliculosus-1a_M_contig91:49530..49678Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 49531..49678 -
1696251078.3884954-CDS-E-siliculosus-1a_M_contig91:49530..496781696251078.3884954-CDS-E-siliculosus-1a_M_contig91:49530..49678Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 49531..49678 -
1622936438.0790768-CDS-E-siliculosus-1a_M_contig91:50693..507441622936438.0790768-CDS-E-siliculosus-1a_M_contig91:50693..50744Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 50694..50744 -
1696251078.3996909-CDS-E-siliculosus-1a_M_contig91:50693..507441696251078.3996909-CDS-E-siliculosus-1a_M_contig91:50693..50744Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 50694..50744 -
1622936438.0949416-CDS-E-siliculosus-1a_M_contig91:51605..518861622936438.0949416-CDS-E-siliculosus-1a_M_contig91:51605..51886Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 51606..51886 -
1696251078.4180942-CDS-E-siliculosus-1a_M_contig91:51605..518861696251078.4180942-CDS-E-siliculosus-1a_M_contig91:51605..51886Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 51606..51886 -
1622936438.109468-CDS-E-siliculosus-1a_M_contig91:52257..524101622936438.109468-CDS-E-siliculosus-1a_M_contig91:52257..52410Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 52258..52410 -
1696251078.4330127-CDS-E-siliculosus-1a_M_contig91:52257..524101696251078.4330127-CDS-E-siliculosus-1a_M_contig91:52257..52410Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 52258..52410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17186.1

>prot_E-siliculosus-1a_M_contig91.17186.1 ID=prot_E-siliculosus-1a_M_contig91.17186.1|Name=mRNA_E-siliculosus-1a_M_contig91.17186.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=211bp
MPQVAESPFSESLQEELRVAITILAARLQREKPMSRQEFERFESAVGVIV
EDALPLQKLPSPASPASPVAAAAAAAAPPRLVVTQSPVPNADSDGDDDDD
FETEGPEWDAKKVQYGLPMGARNTYDIDDMEKMNPEEYQAALRRVEKVVQ
RAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFR
SYGRDASAKK*
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mRNA from alignment at E-siliculosus-1a_M_contig91:49531..52410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17186.1 ID=mRNA_E-siliculosus-1a_M_contig91.17186.1|Name=mRNA_E-siliculosus-1a_M_contig91.17186.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2880bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:49531..52410- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGCAAGTCGCGGAATCTCCGTTCTCGGAGAGCCTTCAGGAGGAACT
CCGAGTCGCCATCACGATCCTCGCGGCGAGGTTGCAACGGGAGAAGCCCA
TGAGCCGCCAGGAGTTCGAGAGGTTCGAGTCCGCCGTGGGCGTCATCGTC
GAGGTATAGTCTGTGGTTGTGGCGCACAAGCAAGCAGTACTCATCGTGTG
TGCGTGAGGAGGATAGCAGTGTTGATCGGTTTTGGTATCTACCACCGTAG
ACACAACCGGTGCGAATAATGGGTGGGTGTTTGCCTATGTCGACCACTGC
ACGTCTTTCGATTTGCGCGTGCTGCCTAGGCAGCTCTACTGCCTATCTAC
TGTAGAACTGCTTGGATAGTTCAGTTGCGCCCGACTCTCTTTTCGGTTCC
AACATGGGATCCGTACACACAGGGAAGGGTAGCGACGCGAGGTTTTGAAA
CATCTCCCCCGCCTCCCAGACCAACACCCCCCGCTACCGTTCATCTTCGT
CTTCTTTGGCCGCTCCCTGTAAAGGATGCCCTGCCGTTGCAGAAGCTGCC
TTCGCCGGCATCCCCGGCAAGCCCTGTGGCGGCGGCGGCCGCGGCGGCGG
CCCCTCCGCGACTAGTGGTGACGCAGTCCCCCGTACCCAACGCCGACAGC
GACGGAGACGATGATGATGACTTCGAAACGGAGGGCCCAGAGTGGGATGC
CAAGAAGGTACAGTACGGTCTGCCGATGGGAGCGCGGAACACGTACGACA
TCGACGACATGGAGAAGATGAACCCGGAAGAGTACCAGGCAGCGCTCAGG
CGAGTGTGTGTGTGTTTTTGTTTTTTTTATTATTATTATTATTAGCATCG
ACCGCGCTAACGGGCTAACCAATGAAAAGACGTCAGTCTCAATGCGGTTG
ACAACACAAAACACTTCTACCTGCCATTAACTGGGACCCCGTGAGGGGGC
GGCATGGGAGAGACTAACCTATTTTCCGGATCAAAGACAGAAACGGTAAC
AACAGAAGAAAACTGCACACGTCTACGAAGGCTGCTACCTTGCTCTCGAT
TCCGTTTTGGAGTGCGTTCACCGTCGTCATCCTCCTTCCTTCCAACTCTA
TATTGTTCTCATGGTCCATTTCACAGCAGCTTCTCGGCATTTCGCCTCTG
GCCCTGCGTCGTTTGTGGTGGGGTGTGTGTGGGTGTGGGTGTATTTTACT
ATTTGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTCGGTCTC
GGTGCGGTTGAAAACACGAAACACTTTTATGTGTGTGTGTGGCGTACATA
CCGGTGTGACACGAGGATAACCCCTCCGTTCTGTGCTCATACATGGATGG
GTTTGTACTTCATGCTGTGACGACATCAAAAGGTGTTCAATCCCCAGCTT
CCCGTGTGTTGGGGGATGTCTTTCTCGCACTTCATGTGTCGGCATCCCTC
ATTTATGGAGAATTATCGATGGTATCCTGGGACTGATTTACCCCCGAGGC
GTGCACGTGACGACGTCGTAGTTTTCGTAGAGAAATGGCCGTGTATCAAG
GCTTCATTGCGTGTCCATTACGTTGACTTATGTTTTCATTGGCTTGAATT
CTTGGTGCTGCCCCCGCCCGCCCCCCTGCCCGCGCGCCTGGTCACATTGT
TTTCGCGTCCAAACAGGGAAAAGGTGGTGCAGAGAGCGCAGTCCGTACGA
AAAACGGGATCATACGGGTGAGTGACGCTTTTCGAACCGGCGTTTTTTGC
TTGCAGTAGTACACAGCAGTCCAATTTTGAAGCGACTCTAAATAGCACGC
ACTCTTTACACAGCCAAACGGTGGAAGGCGAAGTTGCAGGAGTTTACGGC
GATGGGAAAGGAGGCGTGGCTTGCCTCACGGCAGTCTGCCCTCTCCTCGT
TCATTGTTTTATTTTGCGGCCCAACCAGCCTCTCGCTCCGTAGTCGTGTA
CCCGGCTCTCTCTTCCTGTTGGACTATGATCGAGCCCACCCGCCATTTTT
CCAATTTGCAGCATCGTGGGAAACTGCTGCAGCATACCAAGCGAACTGCC
AACAATGGGGTAGTGGCGACACGCGGCCTACGACCGACTCTCTCCCCTTT
TGTGATGCGGTCGTAGAACGCACTCTTGGTTGGGTTGTGTGTGGCCGTCC
TTGCGTGTGCATCGCCCATGTTCGGACCCGACCGAATTTTTCGTGGGTTT
GGCGCCGTGTGCGTGGCCGCTTGCTTGCTCCCAAAAGATGCGATCGTGCT
ACTGATGCAACAGCAGACAAGCCCATCAACAAGAAGAGCGGCCACATGCG
TACGTCACGTACTATTCGTTGATTAATGACTTGGTGCACGCTTCGTTCGG
TTTTCTACGCATCTTGTATCAAGGACACACCTGTCCAACTTCACTGACAA
CCTTCGCACGTGAATCTGCAGTTATTGAGTGTTTATCCCCCCCCTCTCCA
ATGGCCTACCAACTACGGCATGCGTTTACATGAGTGCACCCCCCCGTGTC
TGGTTTCTTCACCTGACTCGCACGCACAATGTACATATCCCTCCCTTTTT
GCTCATCCACCCCCCCCCCCCGGTCGTGGTTTGCATCTACGGTGTGGATA
CAGAACAACCATGGGCATGTTCCTCGTTTCCATGCATGCACCGATGGGTC
GTAGGATCATCTTGACTCTTGCTTCGCCTCATTGGCCTCTTTCATCATGC
TATGTATGTTTGTTTTGCATGTTTGTTTTCAGGAACATTGTCTCGAACGA
GTATCTCAAGTTTTTGGGCAAGAACCCCAAGACCGGAGACGAAAAGTTCA
AGAAGAACGAGGAGTTTGTGAAGAGCAAGGGCCGCGAGGATTTCCGGTCG
TACGGACGGGACGCAAGCGCAAAAAAATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:49531..52410-

>mRNA_E-siliculosus-1a_M_contig91.17186.1 ID=mRNA_E-siliculosus-1a_M_contig91.17186.1|Name=mRNA_E-siliculosus-1a_M_contig91.17186.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:49531..52410- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGCAAGTCGCGGAATCTCCGTTCTCGGAGAGCCTTCAGGAGGAACT
CCGAGTCGCCATCACGATCCTCGCGGCGAGGTTGCAACGGGAGAAGCCCA
TGAGCCGCCAGGAGTTCGAGAGGTTCGAGTCCGCCGTGGGCGTCATCGTC
GAGATGCCGCAAGTCGCGGAATCTCCGTTCTCGGAGAGCCTTCAGGAGGA
ACTCCGAGTCGCCATCACGATCCTCGCGGCGAGGTTGCAACGGGAGAAGC
CCATGAGCCGCCAGGAGTTCGAGAGGTTCGAGTCCGCCGTGGGCGTCATC
GTCGAGGATGCCCTGCCGTTGCAGAAGCTGCCTTCGCCGGCATCCCCGGC
AAGCCCTGTGGCGGCGGCGGCCGCGGCGGCGGCCCCTCCGCGACTAGTGG
TGACGCAGTCCCCCGTACCCAACGCCGACAGCGACGGAGACGATGATGAT
GACTTCGAAACGGAGGGCCCAGAGTGGGATGCCAAGAAGGTACAGTACGG
TCTGCCGATGGGAGCGCGGAACACGTACGACATCGACGACATGGAGAAGA
TGAACCCGGAAGAGTACCAGGCAGCGCTCAGGCGAGTGATGCCCTGCCGT
TGCAGAAGCTGCCTTCGCCGGCATCCCCGGCAAGCCCTGTGGCGGCGGCG
GCCGCGGCGGCGGCCCCTCCGCGACTAGTGGTGACGCAGTCCCCCGTACC
CAACGCCGACAGCGACGGAGACGATGATGATGACTTCGAAACGGAGGGCC
CAGAGTGGGATGCCAAGAAGGTACAGTACGGTCTGCCGATGGGAGCGCGG
AACACGTACGACATCGACGACATGGAGAAGATGAACCCGGAAGAGTACCA
GGCAGCGCTCAGGCGAGTGGAAAAGGTGGTGCAGAGAGCGCAGTCCGTAC
GAAAAACGGGATCATACGGGGAAAAGGTGGTGCAGAGAGCGCAGTCCGTA
CGAAAAACGGGATCATACGGGAACATTGTCTCGAACGAGTATCTCAAGTT
TTTGGGCAAGAACCCCAAGACCGGAGACGAAAAGTTCAAGAAGAACGAGG
AGTTTGTGAAGAGCAAGGGCCGCGAGGATTTCCGGTCGTACGGACGGGAC
GCAAGCGCAAAAAAATAAGAACATTGTCTCGAACGAGTATCTCAAGTTTT
TGGGCAAGAACCCCAAGACCGGAGACGAAAAGTTCAAGAAGAACGAGGAG
TTTGTGAAGAGCAAGGGCCGCGAGGATTTCCGGTCGTACGGACGGGACGC
AAGCGCAAAAAAATAA
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